Wall clock time and date at job start Mon Mar 30 2020 01:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.36130 * 120.22219 * 2 1 4 4 C 1.39205 * 121.89105 * 179.97438 * 3 2 1 5 5 C 1.37987 * 121.33678 * 0.04129 * 4 3 2 6 6 C 1.38541 * 119.32800 * 359.97417 * 5 4 3 7 7 C 1.46024 * 137.95411 * 179.97438 * 6 5 4 8 8 C 1.38453 * 127.76108 * 0.02562 * 7 6 5 9 9 H 1.07993 * 119.99987 * 354.54228 * 8 7 6 10 10 C 1.40803 * 119.99717 * 174.54040 * 8 7 6 11 11 N 1.30393 * 120.00176 * 6.04077 * 10 8 7 12 12 Si 1.86801 * 120.00011 * 186.03887 * 10 8 7 13 13 H 1.48492 * 109.47048 * 94.98451 * 12 10 8 14 14 H 1.48503 * 109.47146 * 214.98684 * 12 10 8 15 15 H 1.48501 * 109.46810 * 334.98180 * 12 10 8 16 16 O 1.35413 * 104.47087 * 179.24616 * 7 6 5 17 17 N 1.20855 * 113.51806 * 0.72524 * 16 7 6 18 18 C 1.31484 * 114.19616 * 359.35628 * 17 16 7 19 19 H 1.09009 * 109.46844 * 90.00241 * 1 2 3 20 20 H 1.09005 * 109.47405 * 330.00537 * 1 2 3 21 21 H 1.08999 * 109.47920 * 210.00158 * 1 2 3 22 22 H 1.08000 * 119.05756 * 359.97438 * 3 2 1 23 23 H 1.08007 * 119.33791 * 180.02562 * 4 3 2 24 24 H 1.07999 * 120.33534 * 180.02562 * 5 4 3 25 25 H 0.97003 * 120.00099 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1921 1.1763 0.0000 4 6 3.5836 1.2168 0.0005 5 6 4.3352 0.0596 0.0002 6 6 3.6920 -1.1674 -0.0001 7 6 4.0546 -2.5819 -0.0009 8 6 5.3254 -3.1313 -0.0011 9 1 6.1905 -2.4910 -0.0897 10 6 5.4899 -4.5250 0.1141 11 7 4.4470 -5.3077 0.1025 12 14 7.2019 -5.2526 0.2836 13 1 7.5143 -5.4534 1.7213 14 1 7.2570 -6.5582 -0.4220 15 1 8.1955 -4.3248 -0.3141 16 8 2.8687 -3.2353 0.0166 17 7 1.9115 -2.4974 0.0131 18 6 2.2168 -1.2186 0.0066 19 1 -0.3633 0.0000 -1.0278 20 1 -0.3634 0.8901 0.5138 21 1 -0.3635 -0.8899 0.5138 22 1 1.6404 2.1047 -0.0004 23 1 4.0851 2.1734 0.0009 24 1 5.4141 0.1099 0.0011 25 1 4.5603 -6.2678 0.1815 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261310207.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:13 Heat of formation + Delta-G solvation = 24.264198 kcal Electronic energy + Delta-G solvation = -12393.207613 eV Core-core repulsion = 10144.785593 eV Total energy + Delta-G solvation = -2248.422021 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.069 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.93592 -38.72442 -36.39578 -33.73252 -32.40082 -31.70941 -28.19956 -27.29440 -24.32377 -23.55875 -21.28705 -19.53220 -17.86134 -17.57232 -17.36094 -16.61627 -15.86878 -14.82189 -14.47979 -14.31629 -14.12035 -13.65173 -13.27965 -13.17842 -12.92321 -12.53392 -12.23254 -12.10049 -11.82827 -11.66845 -10.74725 -10.69232 -9.80356 -9.18188 -8.83204 -6.72673 0.13266 1.03420 1.34562 1.41706 1.58434 1.83805 2.05536 2.74967 3.21060 3.29306 3.65300 4.09617 4.28431 4.50508 4.55699 4.66225 4.84598 4.88287 4.93816 5.02097 5.16875 5.63549 5.69430 5.89336 5.92267 6.01074 6.09976 6.17967 6.53265 7.80415 8.50274 Molecular weight = 203.07amu Principal moments of inertia in cm(-1) A = 0.056498 B = 0.010132 C = 0.008638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.477510 B = 2762.821967 C = 3240.803359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.172 4.172 3 C -0.056 4.056 4 C -0.249 4.249 5 C -0.008 4.008 6 C -0.349 4.349 7 C 0.131 3.869 8 C -0.371 4.371 9 H 0.140 0.860 10 C 0.013 3.987 11 N -0.760 5.760 12 Si 1.024 2.976 13 H -0.253 1.253 14 H -0.258 1.258 15 H -0.238 1.238 16 O 0.030 5.970 17 N -0.522 5.522 18 C 0.069 3.931 19 H 0.059 0.941 20 H 0.087 0.913 21 H 0.035 0.965 22 H 0.146 0.854 23 H 0.141 0.859 24 H 0.127 0.873 25 H 0.315 0.685 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.182 3.886 0.303 6.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.176 4.176 3 C -0.076 4.076 4 C -0.270 4.270 5 C -0.026 4.026 6 C -0.357 4.357 7 C 0.070 3.930 8 C -0.398 4.398 9 H 0.158 0.842 10 C -0.212 4.212 11 N -0.383 5.383 12 Si 0.839 3.161 13 H -0.177 1.177 14 H -0.181 1.181 15 H -0.160 1.160 16 O -0.007 6.007 17 N -0.258 5.258 18 C -0.079 4.079 19 H 0.078 0.922 20 H 0.105 0.895 21 H 0.054 0.946 22 H 0.164 0.836 23 H 0.159 0.841 24 H 0.145 0.855 25 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.948 2.893 0.308 4.904 hybrid contribution 0.711 -0.171 0.025 0.732 sum 4.659 2.722 0.333 5.406 Atomic orbital electron populations 1.20417 0.90369 1.01746 1.01350 1.18869 0.96175 0.89352 1.13203 1.20641 0.94567 0.96326 0.96089 1.20796 0.93736 0.97315 1.15124 1.20219 0.99050 0.89727 0.93626 1.21302 0.94022 0.93775 1.26614 1.22815 0.89170 0.88831 0.92185 1.19741 0.90491 0.94299 1.35281 0.84230 1.27832 1.05904 0.96497 0.90992 1.69649 1.35792 1.08578 1.24270 0.84556 0.72683 0.78484 0.80362 1.17727 1.18142 1.16004 1.85002 1.09658 1.32176 1.73858 1.73215 1.10713 1.02686 1.39139 1.21861 0.93749 0.92615 0.99633 0.92208 0.89460 0.94588 0.83604 0.84076 0.85524 0.87314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.14 10.03 71.23 0.71 -2.43 15 2 C -0.17 -7.96 5.90 -19.67 -0.12 -8.07 15 3 C -0.06 -2.18 9.54 22.01 0.21 -1.97 15 4 C -0.25 -9.65 10.00 22.44 0.22 -9.42 15 5 C -0.01 -0.34 10.09 22.28 0.22 -0.12 15 6 C -0.35 -18.89 6.73 -18.71 -0.13 -19.02 15 7 C 0.13 7.39 7.10 24.34 0.17 7.56 15 8 C -0.37 -18.05 9.36 22.95 0.21 -17.84 15 9 H 0.14 5.90 7.87 -2.91 -0.02 5.88 15 10 C 0.01 0.57 5.50 85.53 0.47 1.04 15 11 N -0.76 -36.84 12.11 21.98 0.27 -36.57 15 12 Si 1.02 30.69 29.57 68.60 2.03 32.72 15 13 H -0.25 -7.32 7.11 99.48 0.71 -6.62 15 14 H -0.26 -7.29 7.11 99.48 0.71 -6.59 15 15 H -0.24 -6.55 7.11 99.48 0.71 -5.84 15 16 O 0.03 1.87 9.58 57.86 0.55 2.43 15 17 N -0.52 -31.94 11.96 -48.72 -0.58 -32.52 15 18 C 0.07 3.86 7.28 42.35 0.31 4.17 15 19 H 0.06 2.13 8.14 -2.38 -0.02 2.11 15 20 H 0.09 2.62 8.08 -2.38 -0.02 2.60 15 21 H 0.03 1.49 8.10 -2.39 -0.02 1.47 15 22 H 0.15 4.33 8.06 -2.91 -0.02 4.31 15 23 H 0.14 4.27 8.06 -2.91 -0.02 4.25 15 24 H 0.13 4.83 8.06 -2.91 -0.02 4.80 15 25 H 0.31 13.07 8.29 -92.71 -0.77 12.30 15 Total: -1.00 -67.13 230.72 5.77 -61.36 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: 1.20 Total: 18.68 kcal Atomic # 6 Polarization: -48.39 SS G_CDS: 2.30 Total: -46.09 kcal Atomic # 7 Polarization: -68.78 SS G_CDS: -0.32 Total: -69.09 kcal Atomic # 8 Polarization: 1.87 SS G_CDS: 0.55 Total: 2.43 kcal Atomic # 14 Polarization: 30.69 SS G_CDS: 2.03 Total: 32.72 kcal Total: -67.13 5.77 -61.36 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261310207.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.625 kcal (2) G-P(sol) polarization free energy of solvation -67.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds