Wall clock time and date at job start Mon Mar 30 2020 01:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40125 * 126.49613 * 2 1 4 4 N 1.28669 * 108.93512 * 180.28803 * 3 2 1 5 5 C 1.34848 * 109.63756 * 359.76378 * 4 3 2 6 6 C 1.41486 * 126.02014 * 179.97438 * 5 4 3 7 7 H 1.08002 * 119.99839 * 180.02562 * 6 5 4 8 8 C 1.39743 * 120.00400 * 0.02588 * 6 5 4 9 9 N 1.30985 * 119.99717 * 0.02562 * 8 6 5 10 10 Si 1.86790 * 120.00321 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47028 * 59.99811 * 10 8 6 12 12 H 1.48500 * 109.47339 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47357 * 300.00503 * 10 8 6 14 14 C 1.35022 * 126.49110 * 179.88394 * 2 1 3 15 15 C 1.50703 * 126.77218 * 359.97438 * 14 2 1 16 16 F 1.39904 * 109.46969 * 239.68587 * 15 14 2 17 17 F 1.39901 * 109.47086 * 119.68990 * 15 14 2 18 18 H 1.08995 * 109.47053 * 270.11829 * 1 2 3 19 19 H 1.09000 * 109.46742 * 30.11850 * 1 2 3 20 20 H 1.09007 * 109.47101 * 150.11701 * 1 2 3 21 21 H 0.96997 * 120.00294 * 179.97438 * 9 8 6 22 22 H 1.09002 * 109.47152 * 359.68658 * 15 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2984 1.1265 0.0000 4 7 3.5251 0.7383 -0.0061 5 6 3.5740 -0.6093 -0.0051 6 6 4.7477 -1.3994 -0.0111 7 1 4.6734 -2.4768 -0.0100 8 6 6.0031 -0.7856 -0.0183 9 7 6.0932 0.5211 -0.0191 10 14 7.5527 -1.8286 -0.0255 11 1 7.5660 -2.6870 -1.2372 12 1 8.7451 -0.9436 -0.0320 13 1 7.5789 -2.6847 1.1877 14 6 2.2679 -1.0855 0.0022 15 6 1.8340 -2.5287 0.0057 16 9 2.3377 -3.1644 1.1456 17 9 2.3249 -3.1660 -1.1389 18 1 -0.3633 0.0021 1.0276 19 1 -0.3633 0.8889 -0.5157 20 1 -0.3634 -0.8911 -0.5120 21 1 6.9646 0.9472 -0.0237 22 1 0.7452 -2.5807 0.0118 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306358981.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:28 Heat of formation + Delta-G solvation = -13.049041 kcal Electronic energy + Delta-G solvation = -13169.315313 eV Core-core repulsion = 10397.338491 eV Total energy + Delta-G solvation = -2771.976823 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.056 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -48.12403 -46.14431 -40.02241 -33.94341 -32.81657 -30.18746 -27.27845 -25.79169 -24.32098 -20.63218 -19.75299 -17.39194 -16.62597 -16.45236 -16.04661 -14.87906 -14.57398 -14.26201 -13.13172 -13.04527 -12.54673 -12.48044 -12.35541 -12.19779 -11.38640 -11.19516 -11.15374 -10.54743 -10.37431 -9.87674 -9.40115 -9.09011 -8.71515 -7.70277 -6.54193 -4.37006 2.50845 3.14206 3.16258 3.19886 3.44797 4.05617 4.13459 4.46730 5.06717 5.21097 5.35072 5.42942 5.54499 5.72751 5.91083 6.62524 6.92425 7.12425 7.32991 7.89912 8.31535 8.59829 8.90256 9.95133 10.40932 Molecular weight = 203.06amu Principal moments of inertia in cm(-1) A = 0.036391 B = 0.014614 C = 0.011175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.244598 B = 1915.471004 C = 2504.914746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.374 5.374 3 N -0.093 5.093 4 N -0.229 5.229 5 C 0.192 3.808 6 C -0.433 4.433 7 H 0.087 0.913 8 C 0.072 3.928 9 N -0.763 5.763 10 Si 0.915 3.085 11 H -0.265 1.265 12 H -0.279 1.279 13 H -0.265 1.265 14 C -0.234 4.234 15 C 0.378 3.622 16 F -0.201 7.201 17 F -0.201 7.201 18 H 0.065 0.935 19 H 0.082 0.918 20 H 0.072 0.928 21 H 0.278 0.722 22 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.089 -4.552 -0.039 8.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.174 5.174 3 N -0.072 5.072 4 N -0.104 5.104 5 C 0.064 3.936 6 C -0.468 4.468 7 H 0.105 0.895 8 C -0.149 4.149 9 N -0.388 5.388 10 Si 0.739 3.261 11 H -0.189 1.189 12 H -0.204 1.204 13 H -0.189 1.189 14 C -0.362 4.362 15 C 0.322 3.678 16 F -0.182 7.182 17 F -0.183 7.183 18 H 0.083 0.917 19 H 0.101 0.899 20 H 0.090 0.910 21 H 0.088 0.912 22 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.872 -2.860 -0.042 7.444 hybrid contribution 0.490 -1.584 0.006 1.658 sum -6.382 -4.443 -0.036 7.777 Atomic orbital electron populations 1.21599 0.76806 1.03252 1.02222 1.49102 1.05790 1.05232 1.57324 1.81425 0.96335 1.08033 1.21358 1.75172 1.07186 1.11910 1.16147 1.18949 0.90754 0.88110 0.95782 1.18737 0.88152 0.93863 1.46045 0.89493 1.25903 1.00833 0.95187 0.93012 1.70001 1.26316 1.09379 1.33079 0.86260 0.79769 0.80133 0.79914 1.18919 1.20354 1.18923 1.21352 0.92891 0.88702 1.33213 1.18677 0.94209 0.83521 0.71436 1.92981 1.90180 1.83408 1.51662 1.92980 1.90589 1.83353 1.51348 0.91697 0.89891 0.90959 0.91164 0.89031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.53 11.20 59.85 0.67 2.20 14 2 N -0.37 -8.30 4.03 -62.90 -0.25 -8.55 14 3 N -0.09 -2.44 13.74 60.35 0.83 -1.61 14 4 N -0.23 -6.71 10.56 32.05 0.34 -6.37 14 5 C 0.19 5.44 6.72 -85.02 -0.57 4.87 14 6 C -0.43 -12.19 9.17 -37.78 -0.35 -12.54 14 7 H 0.09 2.35 7.73 -52.49 -0.41 1.95 14 8 C 0.07 1.93 5.49 -17.35 -0.10 1.84 14 9 N -0.76 -21.44 11.92 55.54 0.66 -20.78 14 10 Si 0.91 19.78 29.56 -169.99 -5.02 14.75 14 11 H -0.26 -5.62 7.11 56.52 0.40 -5.22 14 12 H -0.28 -5.82 7.11 56.52 0.40 -5.42 14 13 H -0.26 -5.62 7.11 56.52 0.40 -5.22 14 14 C -0.23 -5.65 6.55 -80.90 -0.53 -6.18 14 15 C 0.38 7.53 5.33 36.01 0.19 7.72 14 16 F -0.20 -4.24 17.32 2.25 0.04 -4.20 14 17 F -0.20 -4.24 17.32 2.25 0.04 -4.20 14 18 H 0.06 0.82 8.14 -51.93 -0.42 0.40 14 19 H 0.08 1.07 8.14 -51.93 -0.42 0.65 14 20 H 0.07 0.85 7.16 -51.92 -0.37 0.48 14 21 H 0.28 7.09 8.30 -40.82 -0.34 6.75 14 22 H 0.09 1.37 6.88 -51.93 -0.36 1.01 14 LS Contribution 216.58 15.07 3.26 3.26 Total: -1.00 -32.50 216.58 -1.90 -34.40 By element: Atomic # 1 Polarization: -3.51 SS G_CDS: -1.11 Total: -4.62 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: -0.68 Total: -2.08 kcal Atomic # 7 Polarization: -38.89 SS G_CDS: 1.58 Total: -37.31 kcal Atomic # 9 Polarization: -8.48 SS G_CDS: 0.08 Total: -8.40 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.75 kcal Total LS contribution 3.26 Total: 3.26 kcal Total: -32.50 -1.90 -34.40 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306358981.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.353 kcal (2) G-P(sol) polarization free energy of solvation -32.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds