Wall clock time and date at job start Mon Mar 30 2020 01:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40125 * 126.49613 * 2 1 4 4 N 1.28669 * 108.93512 * 180.28803 * 3 2 1 5 5 C 1.34848 * 109.63756 * 359.76378 * 4 3 2 6 6 C 1.41486 * 126.02014 * 179.97438 * 5 4 3 7 7 H 1.08002 * 119.99839 * 180.02562 * 6 5 4 8 8 C 1.39743 * 120.00400 * 0.02588 * 6 5 4 9 9 N 1.30985 * 119.99717 * 0.02562 * 8 6 5 10 10 Si 1.86790 * 120.00321 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47028 * 59.99811 * 10 8 6 12 12 H 1.48500 * 109.47339 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47357 * 300.00503 * 10 8 6 14 14 C 1.35022 * 126.49110 * 179.88394 * 2 1 3 15 15 C 1.50703 * 126.77218 * 359.97438 * 14 2 1 16 16 F 1.39904 * 109.46969 * 239.68587 * 15 14 2 17 17 F 1.39901 * 109.47086 * 119.68990 * 15 14 2 18 18 H 1.08995 * 109.47053 * 270.11829 * 1 2 3 19 19 H 1.09000 * 109.46742 * 30.11850 * 1 2 3 20 20 H 1.09007 * 109.47101 * 150.11701 * 1 2 3 21 21 H 0.96997 * 120.00294 * 179.97438 * 9 8 6 22 22 H 1.09002 * 109.47152 * 359.68658 * 15 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2984 1.1265 0.0000 4 7 3.5251 0.7383 -0.0061 5 6 3.5740 -0.6093 -0.0051 6 6 4.7477 -1.3994 -0.0111 7 1 4.6734 -2.4768 -0.0100 8 6 6.0031 -0.7856 -0.0183 9 7 6.0932 0.5211 -0.0191 10 14 7.5527 -1.8286 -0.0255 11 1 7.5660 -2.6870 -1.2372 12 1 8.7451 -0.9436 -0.0320 13 1 7.5789 -2.6847 1.1877 14 6 2.2679 -1.0855 0.0022 15 6 1.8340 -2.5287 0.0057 16 9 2.3377 -3.1644 1.1456 17 9 2.3249 -3.1660 -1.1389 18 1 -0.3633 0.0021 1.0276 19 1 -0.3633 0.8889 -0.5157 20 1 -0.3634 -0.8911 -0.5120 21 1 6.9646 0.9472 -0.0237 22 1 0.7452 -2.5807 0.0118 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306358981.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:28 Heat of formation + Delta-G solvation = -36.900122 kcal Electronic energy + Delta-G solvation = -13170.349574 eV Core-core repulsion = 10397.338491 eV Total energy + Delta-G solvation = -2773.011083 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.056 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -49.75924 -47.78949 -41.93987 -35.80171 -34.63953 -32.07666 -28.97716 -27.41982 -26.20897 -22.55344 -21.53097 -19.27621 -18.21585 -18.09875 -17.82135 -16.72343 -16.23501 -16.06511 -14.81189 -14.67336 -14.19184 -13.96510 -13.85451 -13.79184 -13.23297 -12.97926 -12.86941 -12.37920 -12.04564 -11.72048 -11.26740 -11.00114 -10.55348 -9.67733 -8.46964 -6.41012 0.64399 1.40857 1.42570 1.54439 1.81213 2.15667 2.27375 3.01652 3.34209 3.42812 3.80078 4.03890 4.23937 4.47771 4.63732 4.71156 5.01381 5.25405 5.37189 6.16948 6.26545 6.62706 6.90416 8.01372 8.51036 Molecular weight = 203.06amu Principal moments of inertia in cm(-1) A = 0.036391 B = 0.014614 C = 0.011175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.244598 B = 1915.471004 C = 2504.914746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.350 5.350 3 N -0.127 5.127 4 N -0.284 5.284 5 C 0.144 3.856 6 C -0.472 4.472 7 H 0.086 0.914 8 C 0.024 3.976 9 N -0.810 5.810 10 Si 0.990 3.010 11 H -0.258 1.258 12 H -0.269 1.269 13 H -0.258 1.258 14 C -0.212 4.212 15 C 0.376 3.624 16 F -0.207 7.207 17 F -0.208 7.208 18 H 0.094 0.906 19 H 0.101 0.899 20 H 0.114 0.886 21 H 0.281 0.719 22 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.796 -6.177 -0.038 10.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.149 5.149 3 N -0.104 5.104 4 N -0.156 5.156 5 C 0.014 3.986 6 C -0.507 4.507 7 H 0.104 0.896 8 C -0.192 4.192 9 N -0.436 5.436 10 Si 0.810 3.190 11 H -0.182 1.182 12 H -0.193 1.193 13 H -0.182 1.182 14 C -0.344 4.344 15 C 0.320 3.680 16 F -0.189 7.189 17 F -0.189 7.189 18 H 0.113 0.887 19 H 0.119 0.881 20 H 0.132 0.868 21 H 0.091 0.909 22 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -8.647 -4.435 -0.041 9.718 hybrid contribution 0.691 -1.112 0.010 1.310 sum -7.955 -5.548 -0.030 9.699 Atomic orbital electron populations 1.22335 0.71984 1.06352 1.05115 1.49700 1.08488 1.03844 1.52880 1.81294 0.96204 1.09253 1.23673 1.75116 1.08784 1.12869 1.18839 1.19555 0.92902 0.88499 0.97632 1.18978 0.89367 0.93882 1.48523 0.89580 1.26848 1.03995 0.96343 0.92026 1.70122 1.27194 1.11252 1.35054 0.85150 0.75442 0.78310 0.80136 1.18202 1.19326 1.18225 1.22178 0.92205 0.91350 1.28710 1.19306 0.97320 0.80579 0.70756 1.92967 1.90671 1.83147 1.52095 1.92968 1.91070 1.83086 1.51767 0.88719 0.88057 0.86805 0.90886 0.82082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.99 11.20 127.77 1.43 3.42 14 2 N -0.35 -14.69 4.03 -352.93 -1.42 -16.11 14 3 N -0.13 -6.66 13.74 37.02 0.51 -6.15 14 4 N -0.28 -17.15 10.56 -52.52 -0.55 -17.71 14 5 C 0.14 8.34 6.72 39.67 0.27 8.61 14 6 C -0.47 -27.20 9.17 23.43 0.21 -26.99 14 7 H 0.09 4.74 7.73 -2.91 -0.02 4.72 14 8 C 0.02 1.34 5.49 85.18 0.47 1.81 14 9 N -0.81 -47.39 11.92 21.80 0.26 -47.13 14 10 Si 0.99 41.29 29.56 68.60 2.03 43.31 14 11 H -0.26 -10.33 7.11 99.48 0.71 -9.62 14 12 H -0.27 -10.62 7.11 99.48 0.71 -9.91 14 13 H -0.26 -10.35 7.11 99.48 0.71 -9.64 14 14 C -0.21 -9.88 6.55 42.26 0.28 -9.60 14 15 C 0.38 13.60 5.33 71.24 0.38 13.98 14 16 F -0.21 -8.20 17.32 44.97 0.78 -7.42 14 17 F -0.21 -8.17 17.32 44.97 0.78 -7.40 14 18 H 0.09 1.88 8.14 -2.39 -0.02 1.86 14 19 H 0.10 2.18 8.14 -2.39 -0.02 2.16 14 20 H 0.11 1.90 7.16 -2.38 -0.02 1.88 14 21 H 0.28 14.96 8.30 -92.71 -0.77 14.19 14 22 H 0.16 3.71 6.88 -2.39 -0.02 3.70 14 Total: -1.00 -74.72 216.58 6.67 -68.05 By element: Atomic # 1 Polarization: -1.93 SS G_CDS: 1.26 Total: -0.68 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: 3.04 Total: -8.76 kcal Atomic # 7 Polarization: -85.90 SS G_CDS: -1.21 Total: -87.11 kcal Atomic # 9 Polarization: -16.37 SS G_CDS: 1.56 Total: -14.81 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.31 kcal Total: -74.72 6.67 -68.05 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306358981.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.148 kcal (2) G-P(sol) polarization free energy of solvation -74.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds