Wall clock time and date at job start Mon Mar 30 2020 02:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00177 * 2 1 4 4 H 1.48502 * 109.46711 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47156 * 299.99712 * 3 2 1 6 6 H 1.48500 * 109.46815 * 59.99980 * 3 2 1 7 7 C 1.37881 * 119.99586 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99408 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00305 * 0.02562 * 7 2 1 10 10 H 1.09001 * 110.45876 * 57.58440 * 9 7 2 11 11 N 1.48567 * 110.41156 * 295.17418 * 9 7 2 12 12 C 1.48720 * 104.28820 * 201.79441 * 11 9 7 13 13 H 1.09004 * 110.38960 * 280.64066 * 12 11 9 14 14 C 1.53000 * 110.50734 * 158.14810 * 12 11 9 15 15 O 1.42896 * 109.47011 * 69.86212 * 14 12 11 16 16 C 1.54381 * 104.51692 * 39.36098 * 12 11 9 17 17 H 1.09002 * 110.32526 * 217.32092 * 16 12 11 18 18 O 1.42897 * 110.32202 * 95.21457 * 16 12 11 19 19 C 1.54257 * 105.14978 * 336.27274 * 16 12 11 20 20 H 1.08995 * 110.32672 * 118.84838 * 19 16 12 21 21 O 1.42906 * 110.32239 * 240.94794 * 19 16 12 22 22 H 0.97000 * 119.99895 * 0.02562 * 1 2 3 23 23 H 1.00902 * 110.99892 * 82.18148 * 11 9 7 24 24 H 1.09007 * 109.46711 * 189.86511 * 14 12 11 25 25 H 1.08996 * 109.46894 * 309.85869 * 14 12 11 26 26 H 0.96705 * 113.99945 * 179.97438 * 15 14 12 27 27 H 0.96702 * 114.00196 * 181.42564 * 18 16 12 28 28 H 0.96695 * 113.99929 * 298.55053 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 1 0.5867 -2.5548 -0.8641 11 7 0.4785 -2.6526 1.2580 12 6 0.2519 -4.1179 1.3735 13 1 -0.5694 -4.4273 0.7271 14 6 -0.0364 -4.5029 2.8260 15 8 -1.3201 -4.0029 3.2054 16 6 1.5774 -4.7528 0.9010 17 1 1.3804 -5.6621 0.3331 18 8 2.4170 -5.0403 2.0211 19 6 2.2347 -3.6889 -0.0020 20 1 3.1969 -3.3848 0.4099 21 8 2.4016 -4.1972 -1.3272 22 1 -0.4850 0.8401 -0.0004 23 1 -0.3972 -2.1539 1.2082 24 1 -0.0260 -5.5886 2.9229 25 1 0.7272 -4.0729 3.4741 26 1 -1.5696 -4.2106 4.1163 27 1 3.2735 -5.4210 1.7832 28 1 2.9754 -4.9736 -1.3813 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306379175.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:31 Heat of formation + Delta-G solvation = -142.299684 kcal Electronic energy + Delta-G solvation = -13911.140919 eV Core-core repulsion = 11348.187227 eV Total energy + Delta-G solvation = -2562.953692 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 203.099 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.86941 -36.23211 -35.33804 -34.41963 -32.28162 -29.04781 -27.36481 -25.59518 -22.98580 -19.90185 -19.63757 -17.39463 -17.01887 -16.68071 -16.26099 -15.00719 -14.45633 -13.88423 -13.52363 -13.28970 -13.06871 -12.39676 -12.15563 -11.94546 -11.48190 -11.00212 -10.85401 -10.65302 -10.31040 -10.14294 -9.52803 -9.43035 -9.32897 -8.89784 -8.49777 -7.12141 -6.03198 -4.04375 3.34021 3.41187 3.45343 4.42179 4.50730 4.65834 4.95674 5.23121 5.31706 5.42883 5.67323 5.75841 5.87810 6.00380 6.33655 6.49176 6.58994 6.67578 7.32509 7.88645 7.90400 7.95682 8.11411 8.29012 8.48244 8.83156 8.96409 9.60648 11.09255 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.032656 B = 0.012535 C = 0.010171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.226450 B = 2233.220632 C = 2752.332366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.069 3.931 3 Si 0.900 3.100 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.283 1.283 7 C -0.497 4.497 8 H 0.059 0.941 9 C 0.211 3.789 10 H 0.020 0.980 11 N -0.634 5.634 12 C 0.066 3.934 13 H 0.048 0.952 14 C 0.104 3.896 15 O -0.574 6.574 16 C 0.075 3.925 17 H 0.056 0.944 18 O -0.555 6.555 19 C 0.071 3.929 20 H 0.069 0.931 21 O -0.559 6.559 22 H 0.262 0.738 23 H 0.353 0.647 24 H 0.033 0.967 25 H 0.060 0.940 26 H 0.369 0.631 27 H 0.368 0.632 28 H 0.359 0.641 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.459 -9.815 3.230 10.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.134 4.134 3 Si 0.728 3.272 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.209 1.209 7 C -0.536 4.536 8 H 0.077 0.923 9 C 0.104 3.896 10 H 0.038 0.962 11 N -0.268 5.268 12 C -0.045 4.045 13 H 0.066 0.934 14 C 0.026 3.974 15 O -0.378 6.378 16 C 0.015 3.985 17 H 0.074 0.926 18 O -0.359 6.359 19 C 0.011 3.989 20 H 0.087 0.913 21 O -0.362 6.362 22 H 0.072 0.928 23 H 0.171 0.829 24 H 0.052 0.948 25 H 0.078 0.922 26 H 0.215 0.785 27 H 0.214 0.786 28 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 1.953 -8.652 3.266 9.452 hybrid contribution 0.574 -0.260 -0.285 0.692 sum 2.527 -8.912 2.981 9.731 Atomic orbital electron populations 1.69844 1.06016 1.26859 1.50305 1.24975 0.94909 0.99294 0.94198 0.86414 0.79983 0.83344 0.77433 1.19820 1.21120 1.20943 1.20929 0.92597 0.89474 1.50633 0.92256 1.19867 0.90508 0.90840 0.88352 0.96210 1.64131 1.23747 1.01138 1.37796 1.22360 0.92976 0.94524 0.94650 0.93428 1.21908 0.84100 0.95245 0.96189 1.86514 1.36473 1.81234 1.33594 1.23377 0.91430 0.96214 0.87431 0.92636 1.86556 1.30586 1.85422 1.33344 1.23715 1.00248 0.94291 0.80629 0.91328 1.86678 1.71483 1.48756 1.29293 0.92807 0.82861 0.94845 0.92167 0.78539 0.78559 0.79680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.17 12.31 55.43 0.68 -25.49 15 2 C 0.07 1.97 5.43 -17.82 -0.10 1.88 15 3 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 15 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 15 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 15 6 H -0.28 -6.89 7.11 56.52 0.40 -6.48 15 7 C -0.50 -14.24 8.74 -34.44 -0.30 -14.54 15 8 H 0.06 1.68 7.56 -52.49 -0.40 1.28 15 9 C 0.21 5.57 2.71 -67.22 -0.18 5.39 15 10 H 0.02 0.59 8.08 -51.93 -0.42 0.17 15 11 N -0.63 -15.97 6.81 -96.98 -0.66 -16.63 15 12 C 0.07 1.38 3.43 -65.98 -0.23 1.15 15 13 H 0.05 1.01 8.14 -51.93 -0.42 0.59 15 14 C 0.10 1.90 5.93 37.16 0.22 2.12 15 15 O -0.57 -10.30 13.66 -35.23 -0.48 -10.78 15 16 C 0.08 1.38 4.07 -25.35 -0.10 1.27 15 17 H 0.06 0.89 7.98 -51.93 -0.41 0.47 15 18 O -0.55 -9.05 11.81 -35.23 -0.42 -9.47 15 19 C 0.07 1.50 3.76 -25.35 -0.10 1.41 15 20 H 0.07 1.48 7.53 -51.93 -0.39 1.08 15 21 O -0.56 -10.89 13.27 -35.23 -0.47 -11.36 15 22 H 0.26 7.31 8.31 -40.82 -0.34 6.97 15 23 H 0.35 9.61 7.99 -39.29 -0.31 9.30 15 24 H 0.03 0.53 8.14 -51.93 -0.42 0.11 15 25 H 0.06 1.17 7.71 -51.93 -0.40 0.77 15 26 H 0.37 4.55 9.12 45.56 0.42 4.96 15 27 H 0.37 4.15 9.11 45.56 0.42 4.56 15 28 H 0.36 4.71 9.11 45.56 0.41 5.12 15 LS Contribution 241.57 15.07 3.64 3.64 Total: -1.00 -33.59 241.57 -4.58 -38.17 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -1.07 Total: 16.29 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -0.78 Total: -1.32 kcal Atomic # 7 Polarization: -42.14 SS G_CDS: 0.02 Total: -42.12 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: -1.37 Total: -31.61 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -33.59 -4.58 -38.17 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306379175.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.128 kcal (2) G-P(sol) polarization free energy of solvation -33.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds