Wall clock time and date at job start Mon Mar 30 2020 02:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00177 * 2 1 4 4 H 1.48502 * 109.46711 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47156 * 299.99712 * 3 2 1 6 6 H 1.48500 * 109.46815 * 59.99980 * 3 2 1 7 7 C 1.37881 * 119.99586 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99408 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00305 * 0.02562 * 7 2 1 10 10 H 1.09001 * 110.45876 * 57.58440 * 9 7 2 11 11 N 1.48567 * 110.41156 * 295.17418 * 9 7 2 12 12 C 1.48720 * 104.28820 * 201.79441 * 11 9 7 13 13 H 1.09004 * 110.38960 * 280.64066 * 12 11 9 14 14 C 1.53000 * 110.50734 * 158.14810 * 12 11 9 15 15 O 1.42896 * 109.47011 * 69.86212 * 14 12 11 16 16 C 1.54381 * 104.51692 * 39.36098 * 12 11 9 17 17 H 1.09002 * 110.32526 * 217.32092 * 16 12 11 18 18 O 1.42897 * 110.32202 * 95.21457 * 16 12 11 19 19 C 1.54257 * 105.14978 * 336.27274 * 16 12 11 20 20 H 1.08995 * 110.32672 * 118.84838 * 19 16 12 21 21 O 1.42906 * 110.32239 * 240.94794 * 19 16 12 22 22 H 0.97000 * 119.99895 * 0.02562 * 1 2 3 23 23 H 1.00902 * 110.99892 * 82.18148 * 11 9 7 24 24 H 1.09007 * 109.46711 * 189.86511 * 14 12 11 25 25 H 1.08996 * 109.46894 * 309.85869 * 14 12 11 26 26 H 0.96705 * 113.99945 * 179.97438 * 15 14 12 27 27 H 0.96702 * 114.00196 * 181.42564 * 18 16 12 28 28 H 0.96695 * 113.99929 * 298.55053 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 1 0.5867 -2.5548 -0.8641 11 7 0.4785 -2.6526 1.2580 12 6 0.2519 -4.1179 1.3735 13 1 -0.5694 -4.4273 0.7271 14 6 -0.0364 -4.5029 2.8260 15 8 -1.3201 -4.0029 3.2054 16 6 1.5774 -4.7528 0.9010 17 1 1.3804 -5.6621 0.3331 18 8 2.4170 -5.0403 2.0211 19 6 2.2347 -3.6889 -0.0020 20 1 3.1969 -3.3848 0.4099 21 8 2.4016 -4.1972 -1.3272 22 1 -0.4850 0.8401 -0.0004 23 1 -0.3972 -2.1539 1.2082 24 1 -0.0260 -5.5886 2.9229 25 1 0.7272 -4.0729 3.4741 26 1 -1.5696 -4.2106 4.1163 27 1 3.2735 -5.4210 1.7832 28 1 2.9754 -4.9736 -1.3813 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306379175.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:31 Heat of formation + Delta-G solvation = -177.078149 kcal Electronic energy + Delta-G solvation = -13912.649027 eV Core-core repulsion = 11348.187227 eV Total energy + Delta-G solvation = -2564.461800 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 203.099 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.46193 -37.66803 -36.74146 -36.14216 -34.29852 -30.83495 -29.01783 -27.48620 -24.71553 -21.75363 -21.18666 -18.96634 -18.67809 -18.25557 -17.87316 -16.83657 -16.31205 -15.48832 -15.17775 -14.71584 -14.56098 -14.20804 -13.91342 -13.71225 -13.19923 -12.78353 -12.71870 -12.36308 -12.19962 -11.61343 -11.32195 -11.20730 -10.86620 -10.61838 -10.47054 -9.08338 -8.18373 -6.27879 1.40569 1.42073 1.54126 2.41670 2.98690 3.22077 3.30451 3.57296 3.73984 3.82486 4.16534 4.19321 4.41037 4.43055 4.73068 4.88821 4.91731 5.13679 5.27636 5.71560 6.03835 6.38318 6.73273 6.81545 6.86108 7.00977 7.04718 7.41219 8.93483 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.032656 B = 0.012535 C = 0.010171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.226450 B = 2233.220632 C = 2752.332366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.017 3.983 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.201 3.799 10 H -0.026 1.026 11 N -0.643 5.643 12 C 0.051 3.949 13 H 0.040 0.960 14 C 0.114 3.886 15 O -0.595 6.595 16 C 0.095 3.905 17 H 0.091 0.909 18 O -0.559 6.559 19 C 0.080 3.920 20 H 0.066 0.934 21 O -0.574 6.574 22 H 0.263 0.737 23 H 0.333 0.667 24 H 0.066 0.934 25 H 0.047 0.953 26 H 0.393 0.607 27 H 0.394 0.606 28 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.571 -10.939 3.863 12.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.183 4.183 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.560 4.560 8 H 0.074 0.926 9 C 0.094 3.906 10 H -0.009 1.009 11 N -0.275 5.275 12 C -0.059 4.059 13 H 0.058 0.942 14 C 0.036 3.964 15 O -0.403 6.403 16 C 0.035 3.965 17 H 0.108 0.892 18 O -0.367 6.367 19 C 0.021 3.979 20 H 0.084 0.916 21 O -0.382 6.382 22 H 0.072 0.928 23 H 0.149 0.851 24 H 0.084 0.916 25 H 0.066 0.934 26 H 0.243 0.757 27 H 0.244 0.756 28 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 3.108 -9.829 3.916 11.028 hybrid contribution 0.217 0.022 -0.489 0.535 sum 3.325 -9.807 3.428 10.907 Atomic orbital electron populations 1.69973 1.07398 1.27645 1.50931 1.25835 0.95804 1.02854 0.93803 0.85379 0.78936 0.78928 0.77540 1.18990 1.20470 1.20558 1.21287 0.92690 0.91126 1.50904 0.92611 1.19780 0.90958 0.92688 0.87223 1.00854 1.64041 1.22632 1.04039 1.36747 1.22633 0.94622 0.92008 0.96660 0.94245 1.21761 0.83865 0.96871 0.93892 1.86464 1.36259 1.81699 1.35892 1.23069 0.89956 0.96230 0.87266 0.89183 1.86505 1.32086 1.85620 1.32461 1.23358 0.98799 0.93764 0.82025 0.91646 1.86603 1.72634 1.50614 1.28309 0.92763 0.85128 0.91564 0.93422 0.75733 0.75611 0.76156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.49 12.31 21.45 0.26 -55.23 15 2 C 0.02 0.98 5.43 84.66 0.46 1.44 15 3 Si 0.97 45.51 29.54 68.60 2.03 47.53 15 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 15 5 H -0.28 -12.75 7.11 99.48 0.71 -12.05 15 6 H -0.28 -12.92 7.11 99.48 0.71 -12.21 15 7 C -0.52 -30.42 8.74 25.60 0.22 -30.20 15 8 H 0.06 3.19 7.56 -2.91 -0.02 3.17 15 9 C 0.20 10.86 2.71 44.31 0.12 10.98 15 10 H -0.03 -1.61 8.08 -2.39 -0.02 -1.63 15 11 N -0.64 -33.00 6.81 -460.73 -3.14 -36.13 15 12 C 0.05 2.11 3.43 45.03 0.15 2.26 15 13 H 0.04 1.67 8.14 -2.38 -0.02 1.65 15 14 C 0.11 3.95 5.93 71.98 0.43 4.37 15 15 O -0.60 -20.56 13.66 -148.98 -2.03 -22.59 15 16 C 0.09 3.22 4.07 31.49 0.13 3.35 15 17 H 0.09 2.50 7.98 -2.39 -0.02 2.48 15 18 O -0.56 -16.26 11.81 -148.98 -1.76 -18.02 15 19 C 0.08 3.34 3.76 31.49 0.12 3.45 15 20 H 0.07 2.73 7.53 -2.39 -0.02 2.71 15 21 O -0.57 -21.46 13.27 -148.98 -1.98 -23.44 15 22 H 0.26 15.01 8.31 -92.71 -0.77 14.24 15 23 H 0.33 18.85 7.99 -89.69 -0.72 18.14 15 24 H 0.07 1.88 8.14 -2.38 -0.02 1.86 15 25 H 0.05 1.77 7.71 -2.39 -0.02 1.75 15 26 H 0.39 8.91 9.12 -74.05 -0.68 8.24 15 27 H 0.39 7.18 9.11 -74.06 -0.67 6.50 15 28 H 0.39 9.00 9.11 -74.06 -0.67 8.33 15 Total: -1.00 -73.85 241.57 -6.51 -80.36 By element: Atomic # 1 Polarization: 33.38 SS G_CDS: -1.53 Total: 31.86 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: 1.63 Total: -4.34 kcal Atomic # 7 Polarization: -88.49 SS G_CDS: -2.87 Total: -91.36 kcal Atomic # 8 Polarization: -58.28 SS G_CDS: -5.77 Total: -64.05 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.53 kcal Total: -73.85 -6.51 -80.36 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306379175.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.715 kcal (2) G-P(sol) polarization free energy of solvation -73.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds