Wall clock time and date at job start Mon Mar 30 2020 02:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09011 * 109.58336 * 2 1 4 4 C 1.53236 * 109.58779 * 239.58412 * 2 1 3 5 5 N 1.46383 * 109.48730 * 182.54433 * 4 2 1 6 6 C 1.36930 * 119.64668 * 245.10959 * 5 4 2 7 7 H 1.07999 * 120.00677 * 331.61158 * 6 5 4 8 8 C 1.38823 * 119.99600 * 151.60754 * 6 5 4 9 9 N 1.31618 * 119.99708 * 341.14417 * 8 6 5 10 10 Si 1.86798 * 119.99745 * 161.14196 * 8 6 5 11 11 H 1.48499 * 109.47190 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.46912 * 120.00282 * 10 8 6 13 13 H 1.48503 * 109.46983 * 240.00113 * 10 8 6 14 14 C 1.46374 * 120.70001 * 65.09919 * 5 4 2 15 15 C 1.53243 * 109.48600 * 294.89963 * 14 5 4 16 16 S 1.81738 * 108.79477 * 57.66367 * 15 14 5 17 17 O 1.42108 * 109.46989 * 189.42478 * 16 15 14 18 18 H 1.08996 * 109.47271 * 299.72757 * 1 2 3 19 19 H 1.09004 * 109.47132 * 59.72735 * 1 2 3 20 20 H 1.08999 * 109.46695 * 179.72548 * 1 2 3 21 21 H 1.08997 * 109.46856 * 302.55547 * 4 2 1 22 22 H 1.09008 * 109.46727 * 62.54921 * 4 2 1 23 23 H 0.96999 * 119.99156 * 180.02562 * 9 8 6 24 24 H 1.09007 * 109.46621 * 174.90327 * 14 5 4 25 25 H 1.08992 * 109.47443 * 54.90695 * 14 5 4 26 26 H 1.08996 * 109.58227 * 177.45604 * 15 14 5 27 27 H 1.08996 * 109.58264 * 297.87151 * 15 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0271 0.0000 4 6 2.0437 -0.7309 -1.2450 5 7 3.5062 -0.7827 -1.2122 6 6 4.2292 -0.1156 -2.1647 7 1 3.8087 0.0474 -3.1461 8 6 5.5027 0.3512 -1.8690 9 7 5.8763 0.4944 -0.6152 10 14 6.6858 0.7760 -3.2507 11 1 6.0281 0.5293 -4.5590 12 1 7.0689 2.2073 -3.1518 13 1 7.9009 -0.0704 -3.1396 14 6 4.2040 -1.5397 -0.1717 15 6 3.9338 -0.8999 1.1943 16 16 2.1392 -0.8632 1.4788 17 8 1.8584 -0.0822 2.6324 18 1 -0.3633 0.5096 0.8924 19 1 -0.3633 0.5181 -0.8876 20 1 -0.3633 -1.0277 -0.0049 21 1 1.6445 -1.7450 -1.2615 22 1 1.7191 -0.1981 -2.1389 23 1 6.7660 0.8210 -0.4086 24 1 5.2755 -1.5296 -0.3719 25 1 3.8448 -2.5687 -0.1683 26 1 4.4155 -1.4884 1.9750 27 1 4.3263 0.1169 1.2055 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306449342.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:13 Heat of formation + Delta-G solvation = -43.384012 kcal Electronic energy + Delta-G solvation = -11930.129248 eV Core-core repulsion = 9814.217732 eV Total energy + Delta-G solvation = -2115.911516 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 203.072 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.35037 -36.64307 -34.78517 -32.99538 -30.97088 -27.41235 -25.46329 -23.08585 -22.02090 -18.98683 -18.05280 -16.94346 -16.47401 -15.91520 -15.67428 -15.37054 -14.81162 -14.59843 -13.61164 -13.33818 -13.16845 -13.14428 -12.86977 -12.62799 -12.43238 -12.18305 -11.95704 -11.81449 -11.52325 -10.69408 -10.39082 -9.11654 -8.73370 -7.90274 -5.37804 0.89995 1.44043 1.47786 1.57010 1.80786 2.49886 2.96173 3.25474 3.61730 4.07304 4.30361 4.47885 4.57473 4.62129 4.84946 4.91503 5.02808 5.13778 5.25573 5.33559 5.53870 5.62588 5.80060 6.39082 7.14366 7.86201 8.26586 9.12994 Molecular weight = 203.07amu Principal moments of inertia in cm(-1) A = 0.052762 B = 0.012238 C = 0.010893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.557179 B = 2287.458025 C = 2569.732321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.416 4.416 3 H 0.037 0.963 4 C 0.169 3.831 5 N -0.617 5.617 6 C -0.266 4.266 7 H 0.072 0.928 8 C -0.050 4.050 9 N -0.926 5.926 10 Si 0.962 3.038 11 H -0.263 1.263 12 H -0.303 1.303 13 H -0.289 1.289 14 C 0.187 3.813 15 C -0.432 4.432 16 S 1.281 4.719 17 O -0.940 6.940 18 H 0.039 0.961 19 H 0.072 0.928 20 H 0.105 0.895 21 H 0.095 0.905 22 H 0.060 0.940 23 H 0.246 0.754 24 H 0.060 0.940 25 H 0.073 0.927 26 H 0.108 0.892 27 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.187 -8.238 -1.127 11.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.539 4.539 3 H 0.056 0.944 4 C 0.042 3.958 5 N -0.339 5.339 6 C -0.396 4.396 7 H 0.089 0.911 8 C -0.246 4.246 9 N -0.571 5.571 10 Si 0.791 3.209 11 H -0.187 1.187 12 H -0.231 1.231 13 H -0.215 1.215 14 C 0.061 3.939 15 C -0.573 4.573 16 S 1.483 4.517 17 O -0.936 6.936 18 H 0.058 0.942 19 H 0.091 0.909 20 H 0.124 0.876 21 H 0.112 0.888 22 H 0.079 0.921 23 H 0.055 0.945 24 H 0.078 0.922 25 H 0.091 0.909 26 H 0.126 0.874 27 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.574 -8.546 -0.282 12.109 hybrid contribution 2.149 3.220 -0.442 3.896 sum -6.424 -5.326 -0.724 8.376 Atomic orbital electron populations 1.21446 0.89564 1.04847 1.01980 1.27900 1.04155 1.07012 1.14783 0.94389 1.20979 0.82450 0.99184 0.93199 1.44522 1.01451 1.56383 1.31502 1.19607 0.97933 1.29674 0.92403 0.91056 1.25790 1.01588 0.99515 0.97688 1.70204 1.19139 1.49860 1.17910 0.85295 0.79245 0.76312 0.80065 1.18748 1.23093 1.21542 1.20360 0.98594 0.91954 0.83038 1.27908 1.17327 1.06156 1.05897 1.68636 0.88513 1.13786 0.80785 1.92869 1.81388 1.76050 1.43267 0.94172 0.90925 0.87583 0.88762 0.92138 0.94487 0.92181 0.90914 0.87410 0.92486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.14 9.22 71.98 0.66 -2.47 15 2 C -0.42 -14.82 3.31 30.67 0.10 -14.72 15 3 H 0.04 1.72 8.14 -2.38 -0.02 1.70 15 4 C 0.17 5.88 5.59 86.48 0.48 6.36 15 5 N -0.62 -27.78 2.81 -701.68 -1.97 -29.76 15 6 C -0.27 -13.75 9.46 84.04 0.80 -12.96 15 7 H 0.07 3.60 7.88 -2.91 -0.02 3.57 15 8 C -0.05 -2.70 4.82 84.86 0.41 -2.29 15 9 N -0.93 -53.33 10.02 21.65 0.22 -53.11 15 10 Si 0.96 43.96 29.59 68.60 2.03 45.99 15 11 H -0.26 -11.33 7.11 99.48 0.71 -10.62 15 12 H -0.30 -14.31 7.11 99.48 0.71 -13.60 15 13 H -0.29 -13.12 7.11 99.48 0.71 -12.41 15 14 C 0.19 7.90 5.36 86.48 0.46 8.36 15 15 C -0.43 -18.17 6.45 72.06 0.46 -17.70 15 16 S 1.28 44.81 13.08 -56.49 -0.74 44.08 15 17 O -0.94 -44.53 18.14 -148.98 -2.70 -47.23 15 18 H 0.04 1.13 8.14 -2.39 -0.02 1.12 15 19 H 0.07 1.75 8.14 -2.39 -0.02 1.73 15 20 H 0.11 1.89 8.14 -2.39 -0.02 1.87 15 21 H 0.09 2.39 8.14 -2.39 -0.02 2.38 15 22 H 0.06 2.14 7.87 -2.38 -0.02 2.12 15 23 H 0.25 13.99 8.31 -92.71 -0.77 13.22 15 24 H 0.06 2.99 5.93 -2.38 -0.01 2.97 15 25 H 0.07 2.34 8.14 -2.39 -0.02 2.32 15 26 H 0.11 3.99 8.14 -2.39 -0.02 3.98 15 27 H 0.06 3.05 7.02 -2.39 -0.02 3.03 15 Total: -1.00 -73.45 233.18 1.36 -72.10 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: 1.14 Total: 3.36 kcal Atomic # 6 Polarization: -38.80 SS G_CDS: 3.38 Total: -35.42 kcal Atomic # 7 Polarization: -81.12 SS G_CDS: -1.75 Total: -82.87 kcal Atomic # 8 Polarization: -44.53 SS G_CDS: -2.70 Total: -47.23 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 16 Polarization: 44.81 SS G_CDS: -0.74 Total: 44.08 kcal Total: -73.45 1.36 -72.10 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306449342.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.713 kcal (2) G-P(sol) polarization free energy of solvation -73.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds