Wall clock time and date at job start Mon Mar 30 2020 02:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.58216 * 2 1 4 4 C 1.53241 * 109.58291 * 120.27322 * 2 1 3 5 5 N 1.46372 * 109.48684 * 177.45007 * 4 2 1 6 6 C 1.36942 * 119.64831 * 114.89146 * 5 4 2 7 7 H 1.07998 * 119.99823 * 28.06035 * 6 5 4 8 8 C 1.38809 * 120.00269 * 208.06949 * 6 5 4 9 9 N 1.31619 * 119.99976 * 19.23119 * 8 6 5 10 10 Si 1.86799 * 120.00148 * 199.24336 * 8 6 5 11 11 H 1.48503 * 109.46849 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.47736 * 119.99131 * 10 8 6 13 13 H 1.48503 * 109.46961 * 239.99739 * 10 8 6 14 14 C 1.46376 * 120.71110 * 294.91285 * 5 4 2 15 15 C 1.53234 * 109.48641 * 65.08315 * 14 5 4 16 16 S 1.81735 * 108.80124 * 302.34934 * 15 14 5 17 17 O 1.42105 * 109.47331 * 170.57721 * 16 15 14 18 18 H 1.08996 * 109.47573 * 299.72500 * 1 2 3 19 19 H 1.08995 * 109.47578 * 59.73293 * 1 2 3 20 20 H 1.09012 * 109.46863 * 179.72765 * 1 2 3 21 21 H 1.09004 * 109.47101 * 57.44616 * 4 2 1 22 22 H 1.08997 * 109.46825 * 297.45410 * 4 2 1 23 23 H 0.97001 * 120.00291 * 180.02562 * 9 8 6 24 24 H 1.09011 * 109.46556 * 305.08533 * 14 5 4 25 25 H 1.08998 * 109.47414 * 185.09269 * 14 5 4 26 26 H 1.09003 * 109.58455 * 62.14438 * 15 14 5 27 27 H 1.09006 * 109.58312 * 182.55375 * 15 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0436 -0.7278 1.2469 5 7 3.5061 -0.7799 1.2142 6 6 4.2291 -0.1105 2.1652 7 1 3.8064 0.0597 3.1444 8 6 5.5052 0.3496 1.8706 9 7 5.8805 0.4915 0.6171 10 14 6.6899 0.7669 3.2533 11 1 6.0300 0.5229 4.5611 12 1 7.9004 -0.0860 3.1425 13 1 7.0808 2.1963 3.1556 14 6 4.2041 -1.5393 0.1757 15 6 3.9337 -0.9030 -1.1918 16 16 2.1392 -0.8669 -1.4766 17 8 1.8584 -0.0888 -2.6321 18 1 -0.3634 0.5095 0.8924 19 1 -0.3634 0.5179 -0.8875 20 1 -0.3633 -1.0278 -0.0049 21 1 1.6444 -1.7420 1.2659 22 1 1.7190 -0.1929 2.1393 23 1 6.7724 0.8127 0.4112 24 1 3.8448 -2.5685 0.1748 25 1 5.2754 -1.5288 0.3759 26 1 4.3263 0.1138 -1.2057 27 1 4.4155 -1.4934 -1.9712 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306449344.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:17 Heat of formation + Delta-G solvation = -19.130019 kcal Electronic energy + Delta-G solvation = -11928.476369 eV Core-core repulsion = 9813.616585 eV Total energy + Delta-G solvation = -2114.859784 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 203.072 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -36.63802 -34.82261 -33.17119 -31.16746 -29.24057 -25.80219 -23.67083 -21.53418 -20.33677 -17.18523 -16.36930 -15.08537 -14.89656 -14.22231 -13.93230 -13.67744 -13.08572 -12.95264 -12.10766 -11.84919 -11.58167 -11.34829 -11.05382 -10.91800 -10.78493 -10.46270 -10.36310 -9.95834 -9.79392 -8.89620 -8.54016 -7.43328 -6.87287 -5.91546 -3.37453 2.44297 3.30886 3.39186 3.39899 3.41708 4.40482 4.58178 5.21125 5.28848 5.56341 5.72994 5.82469 6.15484 6.18914 6.24144 6.39509 6.41786 6.58468 6.63889 6.83249 7.31356 7.47782 7.72656 8.33552 9.08198 9.70693 10.19210 11.14951 Molecular weight = 203.07amu Principal moments of inertia in cm(-1) A = 0.052835 B = 0.012231 C = 0.010885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.820440 B = 2288.740426 C = 2571.830413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.416 4.416 3 H 0.086 0.914 4 C 0.173 3.827 5 N -0.599 5.599 6 C -0.263 4.263 7 H 0.070 0.930 8 C 0.004 3.996 9 N -0.896 5.896 10 Si 0.903 3.097 11 H -0.276 1.276 12 H -0.287 1.287 13 H -0.291 1.291 14 C 0.189 3.811 15 C -0.424 4.424 16 S 1.191 4.809 17 O -0.887 6.887 18 H 0.059 0.941 19 H 0.048 0.952 20 H 0.061 0.939 21 H 0.043 0.957 22 H 0.062 0.938 23 H 0.255 0.745 24 H 0.022 0.978 25 H 0.096 0.904 26 H 0.109 0.891 27 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.535 -6.540 0.297 9.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.537 4.537 3 H 0.105 0.895 4 C 0.045 3.955 5 N -0.320 5.320 6 C -0.393 4.393 7 H 0.088 0.912 8 C -0.195 4.195 9 N -0.540 5.540 10 Si 0.733 3.267 11 H -0.201 1.201 12 H -0.214 1.214 13 H -0.218 1.218 14 C 0.061 3.939 15 C -0.566 4.566 16 S 1.393 4.607 17 O -0.883 6.883 18 H 0.078 0.922 19 H 0.068 0.932 20 H 0.080 0.920 21 H 0.061 0.939 22 H 0.081 0.919 23 H 0.065 0.935 24 H 0.040 0.960 25 H 0.114 0.886 26 H 0.128 0.872 27 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.905 -6.835 -0.554 9.731 hybrid contribution 1.711 2.688 0.668 3.256 sum -5.194 -4.147 0.114 6.647 Atomic orbital electron populations 1.21378 0.93043 1.01842 1.01741 1.27875 1.01144 1.10028 1.14688 0.89520 1.20705 0.84809 0.96510 0.93488 1.44237 0.99634 1.56197 1.31897 1.19285 0.97439 1.30778 0.91760 0.91196 1.25086 0.99868 0.98546 0.96004 1.70026 1.19306 1.48275 1.16372 0.86217 0.81131 0.77551 0.81812 1.20113 1.21395 1.21847 1.20327 1.00309 0.89700 0.83518 1.27871 1.14764 1.09013 1.04965 1.69417 0.92127 1.16122 0.83007 1.92988 1.81003 1.74700 1.39563 0.92206 0.93248 0.91952 0.93948 0.91932 0.93537 0.95973 0.88581 0.87189 0.89296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.80 9.22 37.16 0.34 -1.46 15 2 C -0.42 -7.80 3.31 -26.61 -0.09 -7.89 15 3 H 0.09 1.96 8.14 -51.93 -0.42 1.53 15 4 C 0.17 3.28 5.59 -3.99 -0.02 3.26 15 5 N -0.60 -13.89 2.81 -173.14 -0.49 -14.38 15 6 C -0.26 -6.87 9.46 -15.06 -0.14 -7.01 15 7 H 0.07 1.80 7.88 -52.49 -0.41 1.38 15 8 C 0.00 0.11 4.81 -17.43 -0.08 0.03 15 9 N -0.90 -25.01 10.03 55.49 0.56 -24.45 15 10 Si 0.90 21.09 29.60 -169.99 -5.03 16.06 15 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 15 12 H -0.29 -6.72 7.11 56.52 0.40 -6.31 15 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 15 14 C 0.19 4.09 5.37 -3.99 -0.02 4.07 15 15 C -0.42 -8.98 6.45 37.28 0.24 -8.74 15 16 S 1.19 22.00 13.08 -107.50 -1.41 20.59 15 17 O -0.89 -21.39 18.14 -35.23 -0.64 -22.03 15 18 H 0.06 0.82 8.14 -51.93 -0.42 0.40 15 19 H 0.05 0.77 8.14 -51.93 -0.42 0.34 15 20 H 0.06 0.73 8.14 -51.92 -0.42 0.31 15 21 H 0.04 0.66 8.14 -51.93 -0.42 0.24 15 22 H 0.06 1.19 7.86 -51.93 -0.41 0.79 15 23 H 0.25 6.94 8.31 -40.82 -0.34 6.61 15 24 H 0.02 0.40 8.14 -51.92 -0.42 -0.02 15 25 H 0.10 2.38 5.92 -51.93 -0.31 2.07 15 26 H 0.11 2.85 7.04 -51.93 -0.37 2.49 15 27 H 0.09 1.68 8.14 -51.92 -0.42 1.26 15 LS Contribution 233.19 15.07 3.51 3.51 Total: -1.00 -32.97 233.19 -6.86 -39.82 By element: Atomic # 1 Polarization: 2.20 SS G_CDS: -3.59 Total: -1.39 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: 0.22 Total: -17.74 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: 0.07 Total: -38.83 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -0.64 Total: -22.03 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.06 kcal Atomic # 16 Polarization: 22.00 SS G_CDS: -1.41 Total: 20.59 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -32.97 -6.86 -39.82 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306449344.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.694 kcal (2) G-P(sol) polarization free energy of solvation -32.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds