Wall clock time and date at job start Mon Mar 30 2020 02:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.58216 * 2 1 4 4 C 1.53241 * 109.58291 * 120.27322 * 2 1 3 5 5 N 1.46372 * 109.48684 * 177.45007 * 4 2 1 6 6 C 1.36942 * 119.64831 * 114.89146 * 5 4 2 7 7 H 1.07998 * 119.99823 * 28.06035 * 6 5 4 8 8 C 1.38809 * 120.00269 * 208.06949 * 6 5 4 9 9 N 1.31619 * 119.99976 * 19.23119 * 8 6 5 10 10 Si 1.86799 * 120.00148 * 199.24336 * 8 6 5 11 11 H 1.48503 * 109.46849 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.47736 * 119.99131 * 10 8 6 13 13 H 1.48503 * 109.46961 * 239.99739 * 10 8 6 14 14 C 1.46376 * 120.71110 * 294.91285 * 5 4 2 15 15 C 1.53234 * 109.48641 * 65.08315 * 14 5 4 16 16 S 1.81735 * 108.80124 * 302.34934 * 15 14 5 17 17 O 1.42105 * 109.47331 * 170.57721 * 16 15 14 18 18 H 1.08996 * 109.47573 * 299.72500 * 1 2 3 19 19 H 1.08995 * 109.47578 * 59.73293 * 1 2 3 20 20 H 1.09012 * 109.46863 * 179.72765 * 1 2 3 21 21 H 1.09004 * 109.47101 * 57.44616 * 4 2 1 22 22 H 1.08997 * 109.46825 * 297.45410 * 4 2 1 23 23 H 0.97001 * 120.00291 * 180.02562 * 9 8 6 24 24 H 1.09011 * 109.46556 * 305.08533 * 14 5 4 25 25 H 1.08998 * 109.47414 * 185.09269 * 14 5 4 26 26 H 1.09003 * 109.58455 * 62.14438 * 15 14 5 27 27 H 1.09006 * 109.58312 * 182.55375 * 15 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0436 -0.7278 1.2469 5 7 3.5061 -0.7799 1.2142 6 6 4.2291 -0.1105 2.1652 7 1 3.8064 0.0597 3.1444 8 6 5.5052 0.3496 1.8706 9 7 5.8805 0.4915 0.6171 10 14 6.6899 0.7669 3.2533 11 1 6.0300 0.5229 4.5611 12 1 7.9004 -0.0860 3.1425 13 1 7.0808 2.1963 3.1556 14 6 4.2041 -1.5393 0.1757 15 6 3.9337 -0.9030 -1.1918 16 16 2.1392 -0.8669 -1.4766 17 8 1.8584 -0.0888 -2.6321 18 1 -0.3634 0.5095 0.8924 19 1 -0.3634 0.5179 -0.8875 20 1 -0.3633 -1.0278 -0.0049 21 1 1.6444 -1.7420 1.2659 22 1 1.7190 -0.1929 2.1393 23 1 6.7724 0.8127 0.4112 24 1 3.8448 -2.5685 0.1748 25 1 5.2754 -1.5288 0.3759 26 1 4.3263 0.1138 -1.2057 27 1 4.4155 -1.4934 -1.9712 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306449344.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:17 Heat of formation + Delta-G solvation = -43.309553 kcal Electronic energy + Delta-G solvation = -11929.524872 eV Core-core repulsion = 9813.616585 eV Total energy + Delta-G solvation = -2115.908287 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 203.072 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.35224 -36.64387 -34.78659 -32.99516 -30.97161 -27.41289 -25.46393 -23.08611 -22.01988 -18.98772 -18.05326 -16.94315 -16.47574 -15.91566 -15.67429 -15.37110 -14.81160 -14.59983 -13.61277 -13.33976 -13.16930 -13.14687 -12.86767 -12.62743 -12.43318 -12.18332 -11.95547 -11.81149 -11.52389 -10.69448 -10.38993 -9.11819 -8.73845 -7.90283 -5.37425 0.90023 1.44090 1.47878 1.57074 1.80746 2.49959 2.96091 3.25372 3.61641 4.07108 4.30361 4.47930 4.57329 4.62037 4.85086 4.91300 5.02579 5.13748 5.25572 5.33576 5.53891 5.62548 5.79963 6.38898 7.14261 7.86264 8.26434 9.12999 Molecular weight = 203.07amu Principal moments of inertia in cm(-1) A = 0.052835 B = 0.012231 C = 0.010885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.820440 B = 2288.740426 C = 2571.830413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.417 4.417 3 H 0.037 0.963 4 C 0.169 3.831 5 N -0.617 5.617 6 C -0.266 4.266 7 H 0.072 0.928 8 C -0.050 4.050 9 N -0.926 5.926 10 Si 0.962 3.038 11 H -0.263 1.263 12 H -0.289 1.289 13 H -0.303 1.303 14 C 0.187 3.813 15 C -0.432 4.432 16 S 1.281 4.719 17 O -0.940 6.940 18 H 0.072 0.928 19 H 0.039 0.961 20 H 0.105 0.895 21 H 0.095 0.905 22 H 0.060 0.940 23 H 0.246 0.754 24 H 0.073 0.927 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.198 -8.238 1.135 11.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.539 4.539 3 H 0.056 0.944 4 C 0.042 3.958 5 N -0.339 5.339 6 C -0.396 4.396 7 H 0.090 0.910 8 C -0.246 4.246 9 N -0.571 5.571 10 Si 0.791 3.209 11 H -0.188 1.188 12 H -0.215 1.215 13 H -0.231 1.231 14 C 0.060 3.940 15 C -0.573 4.573 16 S 1.483 4.517 17 O -0.936 6.936 18 H 0.091 0.909 19 H 0.058 0.942 20 H 0.124 0.876 21 H 0.112 0.888 22 H 0.079 0.921 23 H 0.055 0.945 24 H 0.091 0.909 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -8.585 -8.548 0.291 12.118 hybrid contribution 2.150 3.215 0.437 3.893 sum -6.435 -5.333 0.728 8.389 Atomic orbital electron populations 1.21447 0.89563 1.04816 1.02013 1.27905 1.04161 1.07046 1.14764 0.94372 1.20978 0.82444 0.99220 0.93173 1.44530 1.01455 1.56180 1.31695 1.19608 0.97739 1.29694 0.92570 0.91049 1.25775 1.01557 0.99566 0.97686 1.70206 1.18959 1.49999 1.17947 0.85299 0.79259 0.76301 0.80077 1.18757 1.21540 1.23098 1.20366 0.98615 0.91950 0.83039 1.27909 1.17343 1.06134 1.05905 1.68635 0.88498 1.13766 0.80780 1.92868 1.81380 1.76148 1.43174 0.90892 0.94181 0.87605 0.88768 0.92137 0.94482 0.90912 0.92155 0.92510 0.87402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.14 9.22 71.98 0.66 -2.47 15 2 C -0.42 -14.82 3.31 30.68 0.10 -14.72 15 3 H 0.04 1.72 8.14 -2.39 -0.02 1.70 15 4 C 0.17 5.88 5.59 86.48 0.48 6.36 15 5 N -0.62 -27.78 2.81 -701.70 -1.97 -29.75 15 6 C -0.27 -13.75 9.46 84.03 0.80 -12.96 15 7 H 0.07 3.60 7.88 -2.91 -0.02 3.58 15 8 C -0.05 -2.70 4.81 84.86 0.41 -2.29 15 9 N -0.93 -53.32 10.03 21.65 0.22 -53.11 15 10 Si 0.96 43.95 29.60 68.60 2.03 45.98 15 11 H -0.26 -11.33 7.11 99.48 0.71 -10.63 15 12 H -0.29 -13.12 7.11 99.48 0.71 -12.41 15 13 H -0.30 -14.31 7.11 99.48 0.71 -13.60 15 14 C 0.19 7.89 5.37 86.48 0.46 8.35 15 15 C -0.43 -18.16 6.45 72.06 0.46 -17.70 15 16 S 1.28 44.80 13.08 -56.49 -0.74 44.06 15 17 O -0.94 -44.50 18.14 -148.98 -2.70 -47.21 15 18 H 0.07 1.75 8.14 -2.39 -0.02 1.73 15 19 H 0.04 1.13 8.14 -2.39 -0.02 1.11 15 20 H 0.11 1.89 8.14 -2.38 -0.02 1.87 15 21 H 0.09 2.39 8.14 -2.38 -0.02 2.37 15 22 H 0.06 2.14 7.86 -2.39 -0.02 2.12 15 23 H 0.25 13.99 8.31 -92.71 -0.77 13.22 15 24 H 0.07 2.34 8.14 -2.38 -0.02 2.32 15 25 H 0.06 3.00 5.92 -2.39 -0.01 2.99 15 26 H 0.06 3.03 7.04 -2.39 -0.02 3.01 15 27 H 0.11 4.00 8.14 -2.38 -0.02 3.98 15 Total: -1.00 -73.45 233.19 1.36 -72.09 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: 1.14 Total: 3.36 kcal Atomic # 6 Polarization: -38.81 SS G_CDS: 3.38 Total: -35.43 kcal Atomic # 7 Polarization: -81.11 SS G_CDS: -1.75 Total: -82.86 kcal Atomic # 8 Polarization: -44.50 SS G_CDS: -2.70 Total: -47.21 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: 44.80 SS G_CDS: -0.74 Total: 44.06 kcal Total: -73.45 1.36 -72.09 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306449344.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.784 kcal (2) G-P(sol) polarization free energy of solvation -73.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds