Wall clock time and date at job start Mon Mar 30 2020 02:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30895 * 1 3 3 Si 1.86799 * 120.00087 * 2 1 4 4 H 1.48497 * 109.47128 * 270.00096 * 3 2 1 5 5 H 1.48497 * 109.47097 * 30.00220 * 3 2 1 6 6 H 1.48502 * 109.47210 * 150.00298 * 3 2 1 7 7 C 1.39849 * 119.99890 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00237 * 198.01807 * 7 2 1 9 9 C 1.41306 * 120.00117 * 18.01994 * 7 2 1 10 10 C 1.40383 * 119.97000 * 24.86004 * 9 7 2 11 11 C 1.39230 * 119.68563 * 179.97438 * 10 9 7 12 12 N 1.35964 * 133.33015 * 179.97438 * 11 10 9 13 13 C 1.30068 * 109.55422 * 180.02562 * 12 11 10 14 14 N 1.36052 * 110.15165 * 359.97438 * 13 12 11 15 15 H 0.97000 * 126.29812 * 179.97438 * 14 13 12 16 16 C 1.37809 * 107.40492 * 359.76753 * 14 13 12 17 17 C 1.40049 * 133.71136 * 179.52214 * 16 14 13 18 18 N 1.39729 * 119.98545 * 0.70362 * 17 16 14 19 19 C 1.37706 * 120.03283 * 180.41966 * 17 16 14 20 20 H 0.97000 * 119.99971 * 359.97438 * 1 2 3 21 21 H 1.08001 * 120.15683 * 359.95898 * 10 9 7 22 22 H 1.08001 * 124.92688 * 180.02562 * 13 12 11 23 23 H 0.96991 * 120.00421 * 179.72168 * 18 17 16 24 24 H 0.97005 * 119.99807 * 359.44278 * 18 17 16 25 25 H 1.07999 * 119.91942 * 180.27660 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.4905 2.0464 -1.4000 5 1 1.4405 2.6526 0.7001 6 1 3.5406 1.4401 0.7000 7 6 2.0082 -1.2111 -0.0005 8 1 3.0485 -1.2343 0.2888 9 6 1.3536 -2.4047 -0.3796 10 6 0.2336 -2.3524 -1.2243 11 6 -0.4065 -3.5322 -1.5946 12 7 -1.4848 -3.8026 -2.3774 13 6 -1.6880 -5.0869 -2.4099 14 7 -0.7569 -5.7281 -1.6531 15 1 -0.6905 -6.6857 -1.5138 16 6 0.0776 -4.7671 -1.1245 17 6 1.1924 -4.8129 -0.2781 18 7 1.6645 -6.0422 0.1891 19 6 1.8273 -3.6473 0.0891 20 1 -0.4850 0.8401 0.0004 21 1 -0.1300 -1.4016 -1.5851 22 1 -2.4805 -5.5738 -2.9589 23 1 2.4390 -6.0745 0.7720 24 1 1.2151 -6.8631 -0.0662 25 1 2.6895 -3.6851 0.7383 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306636424.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:30 Heat of formation + Delta-G solvation = 38.517549 kcal Electronic energy + Delta-G solvation = -12388.153404 eV Core-core repulsion = 10172.642206 eV Total energy + Delta-G solvation = -2215.511198 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.37931 -38.22538 -36.14939 -34.18987 -32.62830 -30.45909 -28.72406 -26.83659 -23.39868 -22.59125 -21.65221 -19.16996 -18.94248 -17.51532 -16.97703 -16.58290 -15.84101 -15.69431 -15.04734 -14.54291 -14.14306 -13.55539 -13.07100 -12.76624 -12.73459 -12.38162 -11.98866 -11.66579 -11.43727 -10.92517 -10.60952 -10.17590 -9.00593 -8.50473 -7.79522 -6.18697 0.73585 1.11790 1.42237 1.56276 1.60229 2.27716 2.36251 2.46445 2.87296 3.21224 3.85199 3.90118 4.35311 4.75687 4.97078 5.11022 5.18846 5.35286 5.57201 5.65163 5.99382 6.25404 6.27302 6.64160 6.76051 6.98135 7.05109 7.14801 7.24396 7.45985 8.46963 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.046442 B = 0.010756 C = 0.008951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.761361 B = 2602.631343 C = 3127.564566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.031 3.969 3 Si 0.983 3.017 4 H -0.267 1.267 5 H -0.271 1.271 6 H -0.253 1.253 7 C -0.499 4.499 8 H 0.080 0.920 9 C 0.111 3.889 10 C -0.228 4.228 11 C 0.079 3.921 12 N -0.573 5.573 13 C 0.262 3.738 14 N -0.586 5.586 15 H 0.429 0.571 16 C -0.105 4.105 17 C 0.239 3.761 18 N -0.873 5.873 19 C -0.273 4.273 20 H 0.282 0.718 21 H 0.087 0.913 22 H 0.259 0.741 23 H 0.404 0.596 24 H 0.397 0.603 25 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.724 -10.208 -0.830 10.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.183 4.183 3 Si 0.803 3.197 4 H -0.192 1.192 5 H -0.195 1.195 6 H -0.176 1.176 7 C -0.530 4.530 8 H 0.098 0.902 9 C 0.106 3.894 10 C -0.253 4.253 11 C -0.037 4.037 12 N -0.297 5.297 13 C -0.026 4.026 14 N -0.202 5.202 15 H 0.269 0.731 16 C -0.213 4.213 17 C 0.134 3.866 18 N -0.416 5.416 19 C -0.299 4.299 20 H 0.093 0.907 21 H 0.105 0.895 22 H 0.274 0.726 23 H 0.233 0.767 24 H 0.225 0.775 25 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.065 -9.345 -1.215 9.423 hybrid contribution 0.679 -0.354 0.600 0.973 sum 0.743 -9.699 -0.614 9.747 Atomic orbital electron populations 1.70013 1.09233 1.29969 1.36224 1.26791 0.95367 1.04666 0.91493 0.85212 0.79180 0.76031 0.79243 1.19178 1.19547 1.17617 1.19711 0.98396 0.92330 1.42514 0.90177 1.17370 0.90877 0.92810 0.88341 1.20050 1.03206 0.94197 1.07846 1.19090 0.93752 0.93600 0.97228 1.70388 1.18870 1.16008 1.24474 1.26032 0.94336 0.87985 0.94204 1.42444 1.25770 1.08806 1.43202 0.73104 1.18213 1.01293 0.90187 1.11656 1.16390 0.90464 0.87297 0.92410 1.42041 1.37041 1.03801 1.58682 1.20486 1.06694 0.90986 1.11744 0.90726 0.89512 0.72555 0.76693 0.77458 0.86787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -47.77 10.97 21.81 0.24 -47.53 15 2 C 0.03 1.68 5.12 85.22 0.44 2.11 15 3 Si 0.98 40.81 29.60 68.60 2.03 42.84 15 4 H -0.27 -10.89 7.11 99.48 0.71 -10.18 15 5 H -0.27 -10.72 7.11 99.48 0.71 -10.01 15 6 H -0.25 -9.92 7.11 99.48 0.71 -9.21 15 7 C -0.50 -28.35 9.03 23.41 0.21 -28.14 15 8 H 0.08 4.28 7.91 -2.91 -0.02 4.26 15 9 C 0.11 6.37 5.57 -21.32 -0.12 6.25 15 10 C -0.23 -13.71 8.74 23.03 0.20 -13.51 15 11 C 0.08 4.23 7.20 39.35 0.28 4.51 15 12 N -0.57 -27.09 11.29 -192.14 -2.17 -29.25 15 13 C 0.26 8.57 12.96 180.06 2.33 10.91 15 14 N -0.59 -18.49 6.21 -190.21 -1.18 -19.67 15 15 H 0.43 8.96 8.96 -92.71 -0.83 8.13 15 16 C -0.11 -4.65 7.16 39.25 0.28 -4.37 15 17 C 0.24 10.15 6.75 38.20 0.26 10.41 15 18 N -0.87 -25.46 9.09 -51.36 -0.47 -25.93 15 19 C -0.27 -13.47 9.59 22.82 0.22 -13.26 15 20 H 0.28 14.87 8.30 -92.71 -0.77 14.10 15 21 H 0.09 5.67 6.16 -2.91 -0.02 5.65 15 22 H 0.26 4.77 8.06 -2.91 -0.02 4.75 15 23 H 0.40 10.16 8.83 -92.71 -0.82 9.34 15 24 H 0.40 8.96 8.84 -92.70 -0.82 8.15 15 25 H 0.11 5.14 8.06 -2.91 -0.02 5.11 15 Total: -1.00 -75.91 225.71 1.35 -74.56 By element: Atomic # 1 Polarization: 31.28 SS G_CDS: -1.21 Total: 30.07 kcal Atomic # 6 Polarization: -29.20 SS G_CDS: 4.11 Total: -25.09 kcal Atomic # 7 Polarization: -118.80 SS G_CDS: -3.58 Total: -122.38 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.84 kcal Total: -75.91 1.35 -74.56 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306636424.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.073 kcal (2) G-P(sol) polarization free energy of solvation -75.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds