Wall clock time and date at job start Mon Mar 30 2020 02:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.40312 * 119.92336 * 169.47556 * 3 2 1 5 5 C 1.37711 * 120.48122 * 179.97438 * 4 3 2 6 6 C 1.38923 * 120.32755 * 359.97438 * 5 4 3 7 7 N 1.38350 * 120.08019 * 180.27702 * 6 5 4 8 8 N 1.36597 * 120.00252 * 359.72304 * 7 6 5 9 9 C 1.41666 * 119.84244 * 0.02562 * 6 5 4 10 10 C 1.41115 * 120.23862 * 180.02562 * 9 6 5 11 11 H 1.08008 * 119.99739 * 25.61934 * 10 9 6 12 12 C 1.39906 * 120.00268 * 205.61555 * 10 9 6 13 13 N 1.30886 * 119.99775 * 15.33657 * 12 10 9 14 14 Si 1.86800 * 120.00146 * 195.32836 * 12 10 9 15 15 H 1.48509 * 109.46757 * 90.00345 * 14 12 10 16 16 H 1.48495 * 109.47531 * 209.99985 * 14 12 10 17 17 H 1.48498 * 109.47202 * 330.00641 * 14 12 10 18 18 C 1.39017 * 119.92988 * 349.45435 * 3 2 1 19 19 H 1.08001 * 119.75924 * 359.97438 * 4 3 2 20 20 H 1.08001 * 119.83232 * 180.02562 * 5 4 3 21 21 H 0.97003 * 119.99921 * 179.72557 * 7 6 5 22 22 H 1.00895 * 111.00187 * 179.97438 * 8 7 6 23 23 H 1.00901 * 111.00013 * 303.95836 * 8 7 6 24 24 H 0.97002 * 119.99744 * 179.97438 * 13 12 10 25 25 H 1.08007 * 120.16330 * 0.03965 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2674 1.1966 -0.2221 5 6 4.6445 1.2105 -0.2240 6 6 5.3581 0.0388 -0.0052 7 7 6.7414 0.0597 -0.0026 8 7 7.4073 1.2322 -0.2209 9 6 4.6660 -1.1765 0.2205 10 6 5.3825 -2.3714 0.4442 11 1 6.3828 -2.3334 0.8498 12 6 4.7972 -3.6054 0.1407 13 7 3.7304 -3.6552 -0.6160 14 14 5.5383 -5.1818 0.8152 15 1 4.9237 -5.4945 2.1305 16 1 5.2766 -6.2962 -0.1307 17 1 7.0035 -5.0080 0.9824 18 6 3.2622 -1.1835 0.2205 19 1 2.7218 2.1129 -0.3928 20 1 5.1722 2.1370 -0.3957 21 1 7.2386 -0.7584 0.1543 22 1 8.4060 1.0923 -0.1892 23 1 7.1278 1.6492 -1.0961 24 1 3.3248 -4.5108 -0.8267 25 1 2.7241 -2.1043 0.3912 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306825066.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:23 Heat of formation + Delta-G solvation = 70.186040 kcal Electronic energy + Delta-G solvation = -12165.794193 eV Core-core repulsion = 9951.656244 eV Total energy + Delta-G solvation = -2214.137949 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.41126 -36.15048 -34.99115 -33.64312 -30.50785 -29.47576 -26.69747 -25.27797 -21.56374 -21.15958 -18.12342 -17.26946 -16.39408 -16.10979 -14.92433 -14.37811 -13.48737 -13.27219 -12.93788 -12.67240 -12.41034 -11.96103 -11.68884 -11.54925 -11.28584 -11.16186 -10.57980 -10.32900 -10.09814 -9.64990 -9.26536 -8.30446 -7.61069 -6.82067 -6.32017 -4.31344 2.26074 2.75977 3.05210 3.06293 3.11210 3.67298 3.88961 3.93994 4.07879 4.68491 5.17470 5.51138 5.69698 6.20381 6.29835 6.74356 6.83311 7.05717 7.15764 7.28369 7.42179 7.62657 7.78459 7.98853 8.24262 8.44765 8.63103 8.72873 8.83057 9.11723 10.17263 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.022472 B = 0.014807 C = 0.009149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.681601 B = 1890.597378 C = 3059.727797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C 0.289 3.711 3 C -0.078 4.078 4 C -0.136 4.136 5 C -0.171 4.171 6 C 0.154 3.846 7 N -0.596 5.596 8 N -0.604 5.604 9 C 0.060 3.940 10 C -0.467 4.467 11 H 0.074 0.926 12 C 0.075 3.925 13 N -0.801 5.801 14 Si 0.908 3.092 15 H -0.268 1.268 16 H -0.279 1.279 17 H -0.265 1.265 18 C -0.086 4.086 19 H 0.098 0.902 20 H 0.107 0.893 21 H 0.402 0.598 22 H 0.342 0.658 23 H 0.320 0.680 24 H 0.281 0.719 25 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.123 2.407 -0.092 7.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.168 5.168 2 C -0.024 4.024 3 C -0.083 4.083 4 C -0.158 4.158 5 C -0.195 4.195 6 C 0.052 3.948 7 N -0.323 5.323 8 N -0.227 5.227 9 C 0.054 3.946 10 C -0.498 4.498 11 H 0.092 0.908 12 C -0.141 4.141 13 N -0.427 5.427 14 Si 0.733 3.267 15 H -0.193 1.193 16 H -0.205 1.205 17 H -0.189 1.189 18 C -0.110 4.110 19 H 0.117 0.883 20 H 0.125 0.875 21 H 0.240 0.760 22 H 0.154 0.846 23 H 0.135 0.865 24 H 0.092 0.908 25 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.925 2.651 0.417 5.608 hybrid contribution 1.466 -1.518 -0.678 2.217 sum 6.391 1.133 -0.262 6.496 Atomic orbital electron populations 1.81045 1.12809 1.10054 1.12942 1.26316 0.93232 0.91415 0.91399 1.15881 0.82791 0.96074 1.13575 1.20134 0.93297 0.94986 1.07408 1.19881 0.93066 0.96006 1.10524 1.17962 0.81107 0.94662 1.01101 1.42806 1.03160 1.04812 1.81531 1.60214 1.08182 1.14904 1.39361 1.16992 0.91357 0.90510 0.95762 1.19091 1.01667 0.89923 1.39094 0.90785 1.25766 0.94605 1.00908 0.92847 1.69780 1.18436 1.28081 1.26415 0.86319 0.80161 0.80626 0.79613 1.19332 1.20452 1.18905 1.21137 0.93463 0.95251 1.01121 0.88336 0.87540 0.75959 0.84633 0.86517 0.90796 0.85184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -11.30 18.54 41.84 0.78 -10.52 15 2 C 0.29 6.48 15.31 -22.47 -0.34 6.14 15 3 C -0.08 -1.74 5.73 -106.90 -0.61 -2.35 15 4 C -0.14 -2.79 9.73 -38.99 -0.38 -3.17 15 5 C -0.17 -3.45 9.31 -39.52 -0.37 -3.81 15 6 C 0.15 3.30 6.72 -83.36 -0.56 2.74 15 7 N -0.60 -10.77 6.54 32.71 0.21 -10.55 15 8 N -0.60 -8.66 9.57 60.35 0.58 -8.09 15 9 C 0.06 1.42 5.58 -106.69 -0.60 0.82 15 10 C -0.47 -11.01 8.50 -37.87 -0.32 -11.34 15 11 H 0.07 1.63 6.66 -52.48 -0.35 1.28 15 12 C 0.08 1.76 5.18 -17.33 -0.09 1.67 15 13 N -0.80 -19.67 10.88 55.55 0.60 -19.06 15 14 Si 0.91 17.68 29.59 -169.99 -5.03 12.65 15 15 H -0.27 -5.27 7.11 56.52 0.40 -4.86 15 16 H -0.28 -5.43 7.11 56.52 0.40 -5.03 15 17 H -0.26 -5.03 7.11 56.52 0.40 -4.62 15 18 C -0.09 -2.07 8.37 -38.49 -0.32 -2.40 15 19 H 0.10 1.80 8.06 -52.49 -0.42 1.38 15 20 H 0.11 1.91 7.00 -52.49 -0.37 1.55 15 21 H 0.40 7.03 7.02 -185.15 -1.30 5.73 15 22 H 0.34 3.77 9.21 -181.37 -1.67 2.10 15 23 H 0.32 4.29 8.41 -181.37 -1.53 2.76 15 24 H 0.28 6.41 8.30 -40.82 -0.34 6.07 15 25 H 0.13 3.33 6.14 -52.48 -0.32 3.01 15 LS Contribution 231.66 15.07 3.49 3.49 Total: -1.00 -26.37 231.66 -8.05 -34.42 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -5.09 Total: 9.37 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -3.59 Total: -11.70 kcal Atomic # 7 Polarization: -50.40 SS G_CDS: 2.17 Total: -48.23 kcal Atomic # 14 Polarization: 17.68 SS G_CDS: -5.03 Total: 12.65 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -26.37 -8.05 -34.42 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306825066.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.603 kcal (2) G-P(sol) polarization free energy of solvation -26.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds