Wall clock time and date at job start Mon Mar 30 2020 02:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30884 * 1 3 3 Si 1.86805 * 119.99692 * 2 1 4 4 H 1.48502 * 109.47045 * 275.46136 * 3 2 1 5 5 H 1.48501 * 109.47138 * 35.46024 * 3 2 1 6 6 H 1.48500 * 109.46945 * 155.46160 * 3 2 1 7 7 C 1.40004 * 120.00276 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00017 * 340.66868 * 7 2 1 9 9 C 1.40426 * 120.00027 * 160.66681 * 7 2 1 10 10 C 1.46468 * 120.71781 * 318.52829 * 9 7 2 11 11 N 1.34416 * 133.75541 * 359.92222 * 10 9 7 12 12 C 1.30433 * 109.75138 * 180.33996 * 11 10 9 13 13 N 1.35850 * 109.90827 * 359.97438 * 12 11 10 14 14 H 0.96992 * 126.44240 * 179.97438 * 13 12 11 15 15 C 1.38226 * 107.12382 * 0.02562 * 13 12 11 16 16 C 1.39144 * 133.92592 * 180.02562 * 15 13 12 17 17 C 1.37914 * 121.10712 * 179.97438 * 16 15 13 18 18 C 1.38709 * 121.30295 * 0.02562 * 17 16 15 19 19 N 1.38932 * 120.04008 * 179.97438 * 18 17 16 20 20 H 0.96999 * 120.00167 * 0.02562 * 1 2 3 21 21 H 1.07997 * 125.04591 * 180.02562 * 12 11 10 22 22 H 1.08004 * 119.45140 * 0.02562 * 16 15 13 23 23 H 1.07999 * 119.35049 * 180.02562 * 17 16 15 24 24 H 0.97004 * 119.99560 * 6.00507 * 19 18 17 25 25 H 0.96998 * 120.00128 * 185.72722 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.3748 2.1131 -1.3937 5 1 1.5026 2.6167 0.8122 6 1 3.5933 1.4097 0.5815 7 6 2.0089 -1.2124 0.0005 8 1 1.5146 -2.1213 0.3106 9 6 3.3538 -1.2468 -0.4021 10 6 3.8082 -0.4735 -1.5599 11 7 3.1937 0.3486 -2.4279 12 6 4.0553 0.7911 -3.3015 13 7 5.2844 0.2740 -3.0418 14 1 6.0981 0.4434 -3.5417 15 6 5.1573 -0.5401 -1.9319 16 6 6.0457 -1.3256 -1.2041 17 6 5.6238 -2.0509 -0.1096 18 6 4.3005 -2.0250 0.3055 19 7 3.9039 -2.7664 1.4115 20 1 -0.4850 0.8400 -0.0004 21 1 3.8259 1.4686 -4.1106 22 1 7.0834 -1.3673 -1.5006 23 1 6.3377 -2.6508 0.4351 24 1 4.5660 -3.2326 1.9456 25 1 2.9654 -2.8146 1.6519 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306886542.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:38 Heat of formation + Delta-G solvation = 73.325261 kcal Electronic energy + Delta-G solvation = -12759.269850 eV Core-core repulsion = 10545.268028 eV Total energy + Delta-G solvation = -2214.001822 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.73774 -36.63530 -33.49678 -32.20517 -31.66015 -29.31004 -26.83974 -24.62838 -21.83806 -20.39795 -20.07664 -18.02173 -16.46640 -15.85064 -15.60133 -14.62383 -14.29326 -13.90616 -13.10256 -12.85579 -12.19656 -11.95390 -11.72926 -11.42192 -10.83603 -10.61379 -10.22352 -9.99936 -9.43284 -8.89480 -8.70602 -8.37790 -6.94933 -6.78426 -6.31866 -4.08281 2.18524 2.96561 3.36167 3.52343 3.56501 4.00103 4.03197 4.34660 4.71929 5.12578 5.46209 5.53759 5.85066 6.29094 6.42633 6.62260 6.71625 6.94602 7.24422 7.49363 7.66348 7.83269 7.89714 8.23021 8.43924 8.55099 8.87132 8.95691 9.12018 9.22150 10.22510 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.027494 B = 0.021053 C = 0.013572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.164755 B = 1329.673188 C = 2062.501467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.105 3.895 3 Si 0.911 3.089 4 H -0.233 1.233 5 H -0.303 1.303 6 H -0.265 1.265 7 C -0.433 4.433 8 H 0.091 0.909 9 C 0.097 3.903 10 C -0.019 4.019 11 N -0.460 5.460 12 C 0.173 3.827 13 N -0.616 5.616 14 H 0.406 0.594 15 C 0.060 3.940 16 C -0.224 4.224 17 C -0.118 4.118 18 C 0.084 3.916 19 N -0.883 5.883 20 H 0.283 0.717 21 H 0.193 0.807 22 H 0.090 0.910 23 H 0.098 0.902 24 H 0.378 0.622 25 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.732 0.932 -1.999 8.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.115 4.115 3 Si 0.737 3.263 4 H -0.157 1.157 5 H -0.231 1.231 6 H -0.189 1.189 7 C -0.461 4.461 8 H 0.109 0.891 9 C 0.089 3.911 10 C -0.140 4.140 11 N -0.180 5.180 12 C -0.110 4.110 13 N -0.230 5.230 14 H 0.242 0.758 15 C -0.050 4.050 16 C -0.248 4.248 17 C -0.142 4.142 18 C -0.018 4.018 19 N -0.427 5.427 20 H 0.093 0.907 21 H 0.210 0.790 22 H 0.108 0.892 23 H 0.116 0.884 24 H 0.204 0.796 25 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 6.506 1.254 -1.995 6.919 hybrid contribution 1.460 0.496 -0.129 1.547 sum 7.966 1.750 -2.124 8.428 Atomic orbital electron populations 1.69738 1.08333 1.30198 1.34759 1.25995 0.94400 1.01657 0.89468 0.86264 0.79835 0.79989 0.80165 1.15738 1.23131 1.18897 1.18962 0.93381 0.95914 1.37872 0.89131 1.17395 0.92662 0.91896 0.89165 1.19784 0.89691 1.06004 0.98473 1.69762 1.31989 1.11965 1.04285 1.24668 0.80557 1.03719 1.02106 1.42823 1.10940 1.42284 1.26965 0.75787 1.18706 0.97328 0.98039 0.90883 1.18695 0.96367 1.08117 1.01653 1.19740 0.94078 1.02336 0.98059 1.17353 0.91670 1.01480 0.91309 1.41706 1.09892 1.59314 1.31783 0.90692 0.79018 0.89211 0.88427 0.79608 0.77791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.49 13.93 55.55 0.77 -21.72 15 2 C 0.11 2.91 5.33 -17.29 -0.09 2.82 15 3 Si 0.91 23.12 24.66 -169.99 -4.19 18.93 15 4 H -0.23 -5.87 5.97 56.52 0.34 -5.53 15 5 H -0.30 -7.39 7.11 56.52 0.40 -6.99 15 6 H -0.26 -7.08 7.11 56.52 0.40 -6.67 15 7 C -0.43 -12.02 8.64 -38.10 -0.33 -12.35 15 8 H 0.09 2.55 7.44 -52.48 -0.39 2.16 15 9 C 0.10 2.56 4.87 -104.52 -0.51 2.05 15 10 C -0.02 -0.50 5.29 -82.72 -0.44 -0.94 15 11 N -0.46 -11.49 7.56 -10.64 -0.08 -11.58 15 12 C 0.17 3.41 12.98 -89.69 -1.16 2.25 15 13 N -0.62 -11.45 6.24 -11.72 -0.07 -11.52 15 14 H 0.41 5.64 8.96 -40.82 -0.37 5.28 15 15 C 0.06 1.36 7.30 -83.95 -0.61 0.75 15 16 C -0.22 -4.80 10.01 -39.36 -0.39 -5.19 15 17 C -0.12 -2.52 9.79 -39.53 -0.39 -2.91 15 18 C 0.08 1.97 6.79 -83.23 -0.56 1.41 15 19 N -0.88 -17.38 8.97 32.74 0.29 -17.09 15 20 H 0.28 7.27 8.30 -40.82 -0.34 6.93 15 21 H 0.19 2.81 8.06 -52.49 -0.42 2.38 15 22 H 0.09 1.66 8.06 -52.48 -0.42 1.23 15 23 H 0.10 1.77 8.06 -52.49 -0.42 1.35 15 24 H 0.38 6.09 8.84 -40.82 -0.36 5.73 15 25 H 0.39 7.81 7.38 -40.82 -0.30 7.51 15 LS Contribution 217.63 15.07 3.28 3.28 Total: -1.00 -32.06 217.63 -6.37 -38.44 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -1.88 Total: 13.37 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: -4.49 Total: -12.11 kcal Atomic # 7 Polarization: -62.82 SS G_CDS: 0.91 Total: -61.90 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -4.19 Total: 18.93 kcal Total LS contribution 3.28 Total: 3.28 kcal Total: -32.06 -6.37 -38.44 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306886542.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.762 kcal (2) G-P(sol) polarization free energy of solvation -32.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds