Wall clock time and date at job start Mon Mar 30 2020 02:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30884 * 1 3 3 Si 1.86805 * 119.99692 * 2 1 4 4 H 1.48502 * 109.47045 * 275.46136 * 3 2 1 5 5 H 1.48501 * 109.47138 * 35.46024 * 3 2 1 6 6 H 1.48500 * 109.46945 * 155.46160 * 3 2 1 7 7 C 1.40004 * 120.00276 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00017 * 340.66868 * 7 2 1 9 9 C 1.40426 * 120.00027 * 160.66681 * 7 2 1 10 10 C 1.46468 * 120.71781 * 318.52829 * 9 7 2 11 11 N 1.34416 * 133.75541 * 359.92222 * 10 9 7 12 12 C 1.30433 * 109.75138 * 180.33996 * 11 10 9 13 13 N 1.35850 * 109.90827 * 359.97438 * 12 11 10 14 14 H 0.96992 * 126.44240 * 179.97438 * 13 12 11 15 15 C 1.38226 * 107.12382 * 0.02562 * 13 12 11 16 16 C 1.39144 * 133.92592 * 180.02562 * 15 13 12 17 17 C 1.37914 * 121.10712 * 179.97438 * 16 15 13 18 18 C 1.38709 * 121.30295 * 0.02562 * 17 16 15 19 19 N 1.38932 * 120.04008 * 179.97438 * 18 17 16 20 20 H 0.96999 * 120.00167 * 0.02562 * 1 2 3 21 21 H 1.07997 * 125.04591 * 180.02562 * 12 11 10 22 22 H 1.08004 * 119.45140 * 0.02562 * 16 15 13 23 23 H 1.07999 * 119.35049 * 180.02562 * 17 16 15 24 24 H 0.97004 * 119.99560 * 6.00507 * 19 18 17 25 25 H 0.96998 * 120.00128 * 185.72722 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.3748 2.1131 -1.3937 5 1 1.5026 2.6167 0.8122 6 1 3.5933 1.4097 0.5815 7 6 2.0089 -1.2124 0.0005 8 1 1.5146 -2.1213 0.3106 9 6 3.3538 -1.2468 -0.4021 10 6 3.8082 -0.4735 -1.5599 11 7 3.1937 0.3486 -2.4279 12 6 4.0553 0.7911 -3.3015 13 7 5.2844 0.2740 -3.0418 14 1 6.0981 0.4434 -3.5417 15 6 5.1573 -0.5401 -1.9319 16 6 6.0457 -1.3256 -1.2041 17 6 5.6238 -2.0509 -0.1096 18 6 4.3005 -2.0250 0.3055 19 7 3.9039 -2.7664 1.4115 20 1 -0.4850 0.8400 -0.0004 21 1 3.8259 1.4686 -4.1106 22 1 7.0834 -1.3673 -1.5006 23 1 6.3377 -2.6508 0.4351 24 1 4.5660 -3.2326 1.9456 25 1 2.9654 -2.8146 1.6519 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306886542.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:38 Heat of formation + Delta-G solvation = 49.693750 kcal Electronic energy + Delta-G solvation = -12760.294589 eV Core-core repulsion = 10545.268028 eV Total energy + Delta-G solvation = -2215.026561 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.44780 -38.38019 -35.35814 -33.93127 -33.37353 -31.12074 -28.55341 -26.48318 -23.54340 -22.13648 -21.80679 -19.83538 -18.15565 -17.65441 -17.33579 -16.39605 -15.96384 -15.66107 -14.82086 -14.78796 -13.90765 -13.79852 -13.45078 -13.23143 -12.65448 -12.49127 -12.03780 -11.94422 -11.27172 -10.71266 -10.39768 -10.17540 -8.75040 -8.69777 -8.05570 -6.03277 0.44200 1.14034 1.38504 1.50056 1.57454 2.31929 2.40647 2.48439 2.80369 3.51421 3.61516 3.99277 4.30912 4.65023 4.82134 4.90302 4.99933 5.21293 5.44664 5.75559 5.86176 5.95928 6.18143 6.37314 6.64961 6.97207 7.01606 7.21759 7.50618 7.59347 8.36071 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.027494 B = 0.021053 C = 0.013572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.164755 B = 1329.673188 C = 2062.501467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.072 3.928 3 Si 0.960 3.040 4 H -0.229 1.229 5 H -0.299 1.299 6 H -0.288 1.288 7 C -0.470 4.470 8 H 0.060 0.940 9 C 0.044 3.956 10 C -0.032 4.032 11 N -0.527 5.527 12 C 0.213 3.787 13 N -0.593 5.593 14 H 0.433 0.567 15 C 0.026 3.974 16 C -0.185 4.185 17 C -0.130 4.130 18 C 0.088 3.912 19 N -0.873 5.873 20 H 0.284 0.716 21 H 0.247 0.753 22 H 0.133 0.867 23 H 0.138 0.862 24 H 0.397 0.603 25 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.518 1.363 -3.536 12.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.141 4.141 3 Si 0.787 3.213 4 H -0.153 1.153 5 H -0.227 1.227 6 H -0.214 1.214 7 C -0.501 4.501 8 H 0.078 0.922 9 C 0.036 3.964 10 C -0.151 4.151 11 N -0.249 5.249 12 C -0.072 4.072 13 N -0.208 5.208 14 H 0.274 0.726 15 C -0.084 4.084 16 C -0.208 4.208 17 C -0.154 4.154 18 C -0.016 4.016 19 N -0.417 5.417 20 H 0.094 0.906 21 H 0.263 0.737 22 H 0.150 0.850 23 H 0.156 0.844 24 H 0.226 0.774 25 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 10.372 1.661 -3.528 11.080 hybrid contribution 0.765 0.259 0.134 0.818 sum 11.136 1.919 -3.393 11.799 Atomic orbital electron populations 1.69781 1.09006 1.30369 1.39725 1.26407 0.94754 1.03263 0.89704 0.85554 0.77564 0.78314 0.79854 1.15264 1.22693 1.21398 1.18771 0.94761 0.95032 1.41487 0.92215 1.17654 0.92873 0.94883 0.90960 1.20140 0.91354 1.05296 0.98307 1.69766 1.34228 1.14436 1.06421 1.25797 0.79887 1.00924 1.00640 1.42763 1.11941 1.40495 1.25627 0.72591 1.18940 0.96564 1.00023 0.92898 1.19363 0.98021 1.04052 0.99360 1.20251 0.93782 1.02759 0.98576 1.17738 0.92309 1.00157 0.91407 1.41698 1.10435 1.58520 1.31077 0.90637 0.73711 0.84954 0.84400 0.77364 0.78101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -51.26 13.93 21.84 0.30 -50.95 15 2 C 0.07 4.22 5.33 85.26 0.45 4.67 15 3 Si 0.96 49.47 24.66 68.60 1.69 51.17 15 4 H -0.23 -11.37 5.97 99.48 0.59 -10.77 15 5 H -0.30 -14.67 7.11 99.48 0.71 -13.96 15 6 H -0.29 -15.59 7.11 99.48 0.71 -14.88 15 7 C -0.47 -27.64 8.64 23.23 0.20 -27.44 15 8 H 0.06 3.67 7.44 -2.91 -0.02 3.65 15 9 C 0.04 2.37 4.87 -19.80 -0.10 2.28 15 10 C -0.03 -1.62 5.29 41.35 0.22 -1.40 15 11 N -0.53 -25.52 7.56 -187.57 -1.42 -26.94 15 12 C 0.21 7.47 12.98 180.02 2.34 9.81 15 13 N -0.59 -18.97 6.24 -191.01 -1.19 -20.16 15 14 H 0.43 9.27 8.96 -92.71 -0.83 8.44 15 15 C 0.03 1.08 7.30 38.80 0.28 1.36 15 16 C -0.18 -6.93 10.01 22.41 0.22 -6.71 15 17 C -0.13 -5.03 9.79 22.31 0.22 -4.81 15 18 C 0.09 4.02 6.79 38.93 0.26 4.28 15 19 N -0.87 -33.87 8.97 -50.32 -0.45 -34.33 15 20 H 0.28 15.57 8.30 -92.71 -0.77 14.80 15 21 H 0.25 5.65 8.06 -2.91 -0.02 5.63 15 22 H 0.13 3.88 8.06 -2.91 -0.02 3.86 15 23 H 0.14 4.21 8.06 -2.91 -0.02 4.18 15 24 H 0.40 12.00 8.84 -92.71 -0.82 11.18 15 25 H 0.39 16.03 7.38 -92.71 -0.68 15.35 15 Total: -1.00 -73.53 217.63 1.85 -71.68 By element: Atomic # 1 Polarization: 28.66 SS G_CDS: -1.19 Total: 27.47 kcal Atomic # 6 Polarization: -22.05 SS G_CDS: 4.10 Total: -17.95 kcal Atomic # 7 Polarization: -129.62 SS G_CDS: -2.76 Total: -132.37 kcal Atomic # 14 Polarization: 49.47 SS G_CDS: 1.69 Total: 51.17 kcal Total: -73.53 1.85 -71.68 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306886542.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.377 kcal (2) G-P(sol) polarization free energy of solvation -73.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds