Wall clock time and date at job start Mon Mar 30 2020 02:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42098 * 109.47027 * 2 1 4 4 N 1.65600 * 102.99997 * 109.05485 * 2 1 3 5 5 C 1.47028 * 125.64869 * 359.95786 * 4 2 1 6 6 C 1.54363 * 107.28977 * 181.12831 * 5 4 2 7 7 C 1.55161 * 102.92125 * 22.13408 * 6 5 4 8 8 H 1.09010 * 111.00118 * 82.63935 * 7 6 5 9 9 C 1.50694 * 111.00600 * 206.45449 * 7 6 5 10 10 H 1.08000 * 120.00563 * 356.82232 * 9 7 6 11 11 C 1.37885 * 119.99902 * 176.82395 * 9 7 6 12 12 N 1.31516 * 119.99913 * 359.97438 * 11 9 7 13 13 Si 1.86798 * 119.99766 * 179.97438 * 11 9 7 14 14 H 1.48506 * 109.46985 * 179.97438 * 13 11 9 15 15 H 1.48494 * 109.47276 * 299.99832 * 13 11 9 16 16 H 1.48498 * 109.47150 * 60.00043 * 13 11 9 17 17 C 1.47420 * 125.64814 * 179.97438 * 4 2 1 18 18 H 1.09000 * 109.47213 * 310.94638 * 1 2 3 19 19 H 1.09001 * 109.47129 * 70.94469 * 1 2 3 20 20 H 1.09000 * 109.47363 * 190.94305 * 1 2 3 21 21 H 1.08997 * 109.87860 * 300.51293 * 5 4 2 22 22 H 1.09004 * 109.88112 * 61.52006 * 5 4 2 23 23 H 1.08999 * 110.70395 * 263.79850 * 6 5 4 24 24 H 1.08994 * 110.75885 * 140.50663 * 6 5 4 25 25 H 0.97001 * 119.99646 * 179.97438 * 12 11 9 26 26 H 1.08999 * 110.36686 * 36.99505 * 17 4 2 27 27 H 1.09005 * 110.36711 * 274.67002 * 17 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2877 1.3397 0.0000 4 7 2.1865 -0.5268 1.5251 5 6 1.2152 -0.8863 2.5687 6 6 2.0183 -1.2895 3.8237 7 6 3.3870 -0.5943 3.5980 8 1 3.3505 0.4501 3.9080 9 6 4.4907 -1.3291 4.3141 10 1 4.2586 -2.1862 4.9288 11 6 5.7969 -0.9071 4.1846 12 7 6.0796 0.1364 3.4357 13 14 7.1649 -1.8175 5.0728 14 1 8.4672 -1.1704 4.7715 15 1 6.9181 -1.7761 6.5365 16 1 7.1973 -3.2301 4.6160 17 6 3.5471 -0.7126 2.0615 18 1 -0.3633 0.6735 0.7762 19 1 -0.3633 0.3355 -0.9714 20 1 -0.3634 -1.0090 0.1951 21 1 0.5803 -0.0297 2.7949 22 1 0.6027 -1.7230 2.2325 23 1 2.1390 -2.3716 3.8728 24 1 1.5386 -0.9125 4.7269 25 1 6.9986 0.4335 3.3449 26 1 4.2117 0.0665 1.6883 27 1 3.9288 -1.6981 1.7946 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307013521.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:56 Heat of formation + Delta-G solvation = -38.988392 kcal Electronic energy + Delta-G solvation = -11601.174666 eV Core-core repulsion = 9485.453758 eV Total energy + Delta-G solvation = -2115.720907 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 203.072 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -37.21755 -35.02015 -32.72896 -29.67988 -28.94843 -27.50027 -24.40302 -21.11454 -19.62042 -17.24651 -16.47454 -15.75397 -14.81144 -14.45160 -14.24138 -13.47735 -12.73113 -12.51439 -12.32622 -12.10999 -11.85007 -11.48328 -11.32855 -10.90517 -10.55103 -10.46543 -10.00385 -9.71557 -9.20414 -8.94455 -8.46137 -8.34531 -7.21720 -6.02404 -4.07574 2.37808 2.96851 3.32250 3.37577 3.39253 4.42727 4.48965 5.30303 5.35357 5.46801 5.65466 5.86543 6.01225 6.12511 6.24786 6.63094 6.85649 7.00553 7.04383 7.33067 7.44970 7.63271 7.80049 7.99957 8.40892 8.95552 9.57133 11.06849 Molecular weight = 203.07amu Principal moments of inertia in cm(-1) A = 0.061294 B = 0.009677 C = 0.008739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.703197 B = 2892.848844 C = 3203.243720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.525 4.525 2 S 1.501 4.499 3 O -0.906 6.906 4 N -0.907 5.907 5 C 0.124 3.876 6 C -0.126 4.126 7 C 0.046 3.954 8 H 0.033 0.967 9 C -0.515 4.515 10 H 0.059 0.941 11 C 0.063 3.937 12 N -0.888 5.888 13 Si 0.894 3.106 14 H -0.288 1.288 15 H -0.277 1.277 16 H -0.276 1.276 17 C 0.141 3.859 18 H 0.075 0.925 19 H 0.097 0.903 20 H 0.104 0.896 21 H 0.031 0.969 22 H 0.045 0.955 23 H 0.064 0.936 24 H 0.054 0.946 25 H 0.263 0.737 26 H 0.067 0.933 27 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.402 -5.611 -6.608 12.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.681 4.681 2 S 1.605 4.395 3 O -0.890 6.890 4 N -0.745 5.745 5 C -0.004 4.004 6 C -0.165 4.165 7 C 0.026 3.974 8 H 0.051 0.949 9 C -0.554 4.554 10 H 0.077 0.923 11 C -0.140 4.140 12 N -0.525 5.525 13 Si 0.722 3.278 14 H -0.213 1.213 15 H -0.203 1.203 16 H -0.201 1.201 17 C 0.016 3.984 18 H 0.095 0.905 19 H 0.116 0.884 20 H 0.123 0.877 21 H 0.049 0.951 22 H 0.063 0.937 23 H 0.083 0.917 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.085 0.915 27 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.637 -5.118 -7.470 11.846 hybrid contribution -0.262 0.971 1.958 2.201 sum -7.900 -4.147 -5.512 10.487 Atomic orbital electron populations 1.28111 1.26593 1.06989 1.06357 1.70169 0.83024 0.96156 0.90154 1.92975 1.72753 1.41608 1.81671 1.56141 1.12411 1.80514 1.25467 1.21676 0.91678 0.96879 0.90147 1.22701 0.98390 1.00744 0.94710 1.19827 0.90288 0.96105 0.91163 0.94917 1.21007 0.91153 1.13994 1.29259 0.92286 1.25055 0.98887 0.94885 0.95180 1.69969 1.19560 1.24466 1.38546 0.86627 0.81129 0.79916 0.80128 1.21333 1.20311 1.20140 1.22243 0.79922 0.99290 0.96909 0.90538 0.88415 0.87737 0.95103 0.93705 0.91742 0.92756 0.92741 0.91478 0.93270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.53 -6.66 9.70 101.05 0.98 -5.68 15 2 S 1.50 23.74 14.88 -107.50 -1.60 22.14 15 3 O -0.91 -21.22 18.05 -35.23 -0.64 -21.86 15 4 N -0.91 -17.82 3.65 -111.38 -0.41 -18.23 15 5 C 0.12 2.24 6.13 -3.04 -0.02 2.22 15 6 C -0.13 -2.59 6.40 -24.87 -0.16 -2.75 15 7 C 0.05 1.19 2.91 -89.61 -0.26 0.93 15 8 H 0.03 0.95 8.14 -51.92 -0.42 0.52 15 9 C -0.52 -14.01 8.52 -34.44 -0.29 -14.30 15 10 H 0.06 1.55 7.78 -52.49 -0.41 1.14 15 11 C 0.06 1.73 5.35 -17.82 -0.10 1.63 15 12 N -0.89 -25.97 12.29 55.43 0.68 -25.29 15 13 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 15 14 H -0.29 -6.78 7.11 56.52 0.40 -6.37 15 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 16 H -0.28 -6.33 7.11 56.52 0.40 -5.93 15 17 C 0.14 3.37 6.17 -2.52 -0.02 3.35 15 18 H 0.08 1.14 7.91 -51.92 -0.41 0.73 15 19 H 0.10 1.04 8.14 -51.92 -0.42 0.62 15 20 H 0.10 1.07 8.00 -51.92 -0.42 0.66 15 21 H 0.03 0.56 7.91 -51.93 -0.41 0.15 15 22 H 0.04 0.66 8.01 -51.93 -0.42 0.24 15 23 H 0.06 1.26 8.03 -51.93 -0.42 0.84 15 24 H 0.05 1.05 8.14 -51.93 -0.42 0.63 15 25 H 0.26 7.35 8.31 -40.82 -0.34 7.01 15 26 H 0.07 1.83 7.58 -51.93 -0.39 1.43 15 27 H 0.05 1.13 8.03 -51.93 -0.42 0.72 15 LS Contribution 240.90 15.07 3.63 3.63 Total: -1.00 -34.95 240.90 -6.91 -41.85 By element: Atomic # 1 Polarization: 0.00 SS G_CDS: -3.69 Total: -3.70 kcal Atomic # 6 Polarization: -14.73 SS G_CDS: 0.14 Total: -14.59 kcal Atomic # 7 Polarization: -43.79 SS G_CDS: 0.27 Total: -43.52 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -0.64 Total: -21.86 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 23.74 SS G_CDS: -1.60 Total: 22.14 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -34.95 -6.91 -41.85 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307013521.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.862 kcal (2) G-P(sol) polarization free energy of solvation -34.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds