Wall clock time and date at job start Mon Mar 30 2020 02:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42106 * 109.46950 * 2 1 4 4 N 1.65602 * 102.99783 * 109.05472 * 2 1 3 5 5 C 1.47024 * 125.65209 * 359.97438 * 4 2 1 6 6 C 1.54315 * 107.27431 * 178.99661 * 5 4 2 7 7 C 1.55163 * 102.94307 * 337.80906 * 6 5 4 8 8 H 1.08991 * 111.00081 * 277.39031 * 7 6 5 9 9 C 1.50699 * 111.00275 * 153.57582 * 7 6 5 10 10 H 1.08002 * 120.00516 * 3.17623 * 9 7 6 11 11 C 1.37884 * 119.99783 * 183.17923 * 9 7 6 12 12 N 1.31514 * 119.99707 * 0.02562 * 11 9 7 13 13 Si 1.86796 * 119.99956 * 180.27458 * 11 9 7 14 14 H 1.48497 * 109.47172 * 179.72730 * 13 11 9 15 15 H 1.48506 * 109.47132 * 299.72429 * 13 11 9 16 16 H 1.48501 * 109.47173 * 59.72550 * 13 11 9 17 17 C 1.47473 * 125.62701 * 180.02562 * 4 2 1 18 18 H 1.08998 * 109.47764 * 310.94266 * 1 2 3 19 19 H 1.09000 * 109.47040 * 70.94942 * 1 2 3 20 20 H 1.09007 * 109.47366 * 190.94156 * 1 2 3 21 21 H 1.09003 * 109.87691 * 59.57859 * 5 4 2 22 22 H 1.08999 * 110.00726 * 298.49146 * 5 4 2 23 23 H 1.09001 * 110.72092 * 219.44736 * 6 5 4 24 24 H 1.09004 * 110.72155 * 96.16843 * 6 5 4 25 25 H 0.97005 * 119.99656 * 179.97438 * 12 11 9 26 26 H 1.09004 * 110.34943 * 85.23264 * 17 4 2 27 27 H 1.08992 * 110.40451 * 322.89282 * 17 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3398 0.0000 4 7 2.1864 -0.5268 1.5252 5 6 1.2151 -0.8866 2.5686 6 6 2.0183 -1.3413 3.8052 7 6 3.3869 -1.7507 3.1995 8 1 3.3500 -2.7644 2.8008 9 6 4.4906 -1.6131 4.2163 10 1 4.2585 -1.3160 5.2284 11 6 5.7968 -1.8665 3.8546 12 7 6.0794 -2.2278 2.6220 13 14 7.1639 -1.7034 5.1169 14 1 8.4653 -2.0342 4.4827 15 1 7.2024 -0.3095 5.6277 16 1 6.9110 -2.6367 6.2439 17 6 3.5476 -0.7115 2.0617 18 1 -0.3634 0.6734 0.7762 19 1 -0.3633 0.3354 -0.9714 20 1 -0.3634 -1.0090 0.1951 21 1 0.5802 -1.7008 2.2190 22 1 0.6023 -0.0215 2.8220 23 1 1.5382 -2.1943 4.2847 24 1 2.1393 -0.5188 4.5103 25 1 6.9984 -2.4057 2.3674 26 1 3.9297 0.2292 2.4581 27 1 4.2121 -1.0960 1.2880 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307013523.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:58 Heat of formation + Delta-G solvation = -64.526819 kcal Electronic energy + Delta-G solvation = -11582.936578 eV Core-core repulsion = 9466.108241 eV Total energy + Delta-G solvation = -2116.828337 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 203.072 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.94656 -36.64296 -34.74298 -31.44915 -30.29692 -29.03806 -26.40475 -22.76796 -21.43846 -18.84746 -18.36761 -17.37909 -16.58080 -16.30368 -15.60017 -14.93320 -14.40378 -14.11379 -13.74946 -13.64631 -13.50628 -13.33066 -12.87798 -12.77957 -12.43002 -12.25573 -11.61609 -11.50024 -11.08372 -10.90765 -10.53035 -9.89722 -8.73205 -8.14035 -6.22579 1.02247 1.43520 1.44936 1.51996 1.65471 2.44523 3.12907 3.18773 4.04752 4.25419 4.37372 4.39884 4.54804 4.71145 4.81118 5.07455 5.14302 5.22144 5.30771 5.41979 5.71449 5.77297 5.83288 5.96278 6.37406 6.85789 7.44817 8.95384 Molecular weight = 203.07amu Principal moments of inertia in cm(-1) A = 0.060380 B = 0.009541 C = 0.008746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.620314 B = 2933.971539 C = 3200.615516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.509 4.509 2 S 1.542 4.458 3 O -0.983 6.983 4 N -0.913 5.913 5 C 0.121 3.879 6 C -0.123 4.123 7 C 0.043 3.957 8 H 0.029 0.971 9 C -0.537 4.537 10 H 0.053 0.947 11 C 0.017 3.983 12 N -0.914 5.914 13 Si 0.952 3.048 14 H -0.282 1.282 15 H -0.280 1.280 16 H -0.267 1.267 17 C 0.159 3.841 18 H 0.061 0.939 19 H 0.126 0.874 20 H 0.140 0.860 21 H 0.091 0.909 22 H 0.037 0.963 23 H 0.082 0.918 24 H 0.043 0.957 25 H 0.264 0.736 26 H -0.007 1.007 27 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.137 -2.405 -5.293 11.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.667 4.667 2 S 1.649 4.351 3 O -0.968 6.968 4 N -0.750 5.750 5 C -0.006 4.006 6 C -0.162 4.162 7 C 0.022 3.978 8 H 0.047 0.953 9 C -0.576 4.576 10 H 0.071 0.929 11 C -0.183 4.183 12 N -0.553 5.553 13 Si 0.778 3.222 14 H -0.207 1.207 15 H -0.205 1.205 16 H -0.192 1.192 17 C 0.032 3.968 18 H 0.081 0.919 19 H 0.145 0.855 20 H 0.158 0.842 21 H 0.109 0.891 22 H 0.055 0.945 23 H 0.101 0.899 24 H 0.062 0.938 25 H 0.073 0.927 26 H 0.011 0.989 27 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.362 -2.082 -6.187 11.413 hybrid contribution 0.134 1.730 2.137 2.753 sum -9.228 -0.352 -4.050 10.083 Atomic orbital electron populations 1.27920 1.21992 1.09127 1.07678 1.69525 0.84972 0.92987 0.87620 1.92840 1.76442 1.45045 1.82457 1.56158 1.11028 1.80990 1.26785 1.21831 0.91317 0.98613 0.88827 1.22646 0.96850 1.00232 0.96512 1.19761 0.91808 0.93911 0.92303 0.95262 1.21407 0.92627 1.46755 0.96823 0.92921 1.25729 1.00943 0.94496 0.97114 1.70009 1.19982 1.46803 1.18487 0.85700 0.78521 0.78398 0.79554 1.20724 1.20540 1.19180 1.21715 0.81745 0.96190 0.97103 0.91916 0.85520 0.84167 0.89117 0.94512 0.89931 0.93834 0.92701 0.98872 0.92524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.51 -10.70 9.70 113.37 1.10 -9.60 15 2 S 1.54 46.75 14.88 -56.49 -0.84 45.90 15 3 O -0.98 -45.14 18.05 -148.98 -2.69 -47.83 15 4 N -0.91 -35.06 3.66 -506.29 -1.85 -36.91 15 5 C 0.12 4.04 6.12 86.73 0.53 4.57 15 6 C -0.12 -4.88 6.39 31.78 0.20 -4.68 15 7 C 0.04 2.09 2.91 -10.14 -0.03 2.06 15 8 H 0.03 1.49 8.14 -2.39 -0.02 1.47 15 9 C -0.54 -29.49 8.52 25.60 0.22 -29.27 15 10 H 0.05 2.85 7.78 -2.91 -0.02 2.83 15 11 C 0.02 0.94 5.35 84.66 0.45 1.39 15 12 N -0.91 -51.82 12.29 21.45 0.26 -51.56 15 13 Si 0.95 43.56 29.54 68.60 2.03 45.58 15 14 H -0.28 -12.58 7.11 99.48 0.71 -11.87 15 15 H -0.28 -12.80 7.11 99.48 0.71 -12.09 15 16 H -0.27 -11.70 7.11 99.48 0.71 -10.99 15 17 C 0.16 7.79 6.18 86.85 0.54 8.33 15 18 H 0.06 1.58 8.01 -2.39 -0.02 1.56 15 19 H 0.13 2.08 8.14 -2.39 -0.02 2.06 15 20 H 0.14 2.09 7.91 -2.39 -0.02 2.07 15 21 H 0.09 2.29 7.92 -2.39 -0.02 2.27 15 22 H 0.04 1.19 8.02 -2.39 -0.02 1.17 15 23 H 0.08 2.83 8.14 -2.39 -0.02 2.81 15 24 H 0.04 1.82 8.03 -2.38 -0.02 1.80 15 25 H 0.26 14.25 8.31 -92.70 -0.77 13.48 15 26 H -0.01 -0.41 8.03 -2.39 -0.02 -0.43 15 27 H 0.06 2.89 7.58 -2.39 -0.02 2.87 15 Total: -1.00 -74.05 240.92 1.06 -72.99 By element: Atomic # 1 Polarization: -2.13 SS G_CDS: 1.14 Total: -0.99 kcal Atomic # 6 Polarization: -30.21 SS G_CDS: 3.01 Total: -27.19 kcal Atomic # 7 Polarization: -86.88 SS G_CDS: -1.59 Total: -88.46 kcal Atomic # 8 Polarization: -45.14 SS G_CDS: -2.69 Total: -47.83 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 16 Polarization: 46.75 SS G_CDS: -0.84 Total: 45.90 kcal Total: -74.05 1.06 -72.99 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307013523.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.461 kcal (2) G-P(sol) polarization free energy of solvation -74.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds