Wall clock time and date at job start Mon Mar 30 2020 02:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30977 * 1 3 3 Si 1.86798 * 120.00269 * 2 1 4 4 H 1.48504 * 109.46746 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46907 * 299.99541 * 3 2 1 6 6 H 1.48496 * 109.47348 * 59.99580 * 3 2 1 7 7 C 1.39812 * 119.99622 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99825 * 163.28172 * 7 2 1 9 9 C 1.40994 * 119.99802 * 343.26959 * 7 2 1 10 10 C 1.41087 * 120.09062 * 333.88451 * 9 7 2 11 11 C 1.35967 * 120.45026 * 179.72385 * 10 9 7 12 12 C 1.39741 * 120.51688 * 0.02562 * 11 10 9 13 13 N 1.37762 * 133.60193 * 179.97438 * 12 11 10 14 14 H 0.97000 * 126.30596 * 359.96480 * 13 12 11 15 15 C 1.36138 * 107.39672 * 180.02562 * 13 12 11 16 16 N 1.30054 * 110.05015 * 0.02562 * 15 13 12 17 17 C 1.35861 * 109.52559 * 359.97438 * 16 15 13 18 18 C 1.40168 * 133.38378 * 179.97438 * 17 16 15 19 19 N 1.38492 * 120.38873 * 0.02562 * 18 17 16 20 20 H 0.97005 * 119.99493 * 0.02562 * 1 2 3 21 21 H 1.07999 * 119.77623 * 359.73848 * 10 9 7 22 22 H 1.08006 * 119.74276 * 179.97438 * 11 10 9 23 23 H 1.08001 * 124.97676 * 179.97438 * 15 13 12 24 24 H 0.97000 * 119.99878 * 180.02562 * 19 18 17 25 25 H 0.96999 * 120.00284 * 0.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3098 0.0000 0.0000 3 14 2.2438 1.6177 0.0000 4 1 3.7038 1.3461 0.0006 5 1 1.8852 2.3963 -1.2126 6 1 1.8851 2.3965 1.2124 7 6 2.0088 -1.2109 0.0005 8 1 3.0545 -1.2308 -0.2685 9 6 1.3484 -2.4058 0.3526 10 6 0.2220 -2.3680 1.2013 11 6 -0.4237 -3.5153 1.5410 12 6 0.0185 -4.7488 1.0555 13 7 -0.4167 -6.0456 1.2193 14 1 -1.1745 -6.3342 1.7516 15 6 0.4135 -6.8478 0.4977 16 7 1.3236 -6.1309 -0.0933 17 6 1.1367 -4.8198 0.2099 18 6 1.8106 -3.6436 -0.1467 19 7 2.9160 -3.6945 -0.9795 20 1 -0.4849 0.8401 -0.0004 21 1 -0.1299 -1.4212 1.5835 22 1 -1.2846 -3.4731 2.1918 23 1 0.3293 -7.9222 0.4272 24 1 3.3783 -2.8771 -1.2224 25 1 3.2279 -4.5475 -1.3200 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307128879.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:36 Heat of formation + Delta-G solvation = 62.118508 kcal Electronic energy + Delta-G solvation = -12461.743156 eV Core-core repulsion = 10247.255372 eV Total energy + Delta-G solvation = -2214.487783 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.73623 -36.60294 -33.42383 -32.80171 -31.15112 -28.66799 -26.93070 -24.77853 -21.49609 -20.90390 -20.01399 -17.32047 -17.02353 -15.92888 -15.11063 -14.68774 -14.03810 -13.89173 -13.44810 -12.81417 -12.26445 -11.84107 -11.38504 -11.06192 -10.86392 -10.60130 -10.16028 -9.74782 -9.69441 -9.01832 -8.94747 -8.60160 -7.10360 -6.61626 -6.02679 -3.95339 2.51296 2.87744 3.17148 3.21708 3.27067 3.98672 4.02499 4.07992 4.76563 5.25356 5.34990 5.75052 5.95968 6.38946 6.66959 6.71177 7.01570 7.14464 7.37939 7.70224 7.82088 7.99661 8.04160 8.35178 8.55644 8.80142 8.91951 8.97668 9.23204 9.26144 10.42367 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.059012 B = 0.010455 C = 0.009094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.363498 B = 2677.547585 C = 3078.261925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.074 3.926 3 Si 0.903 3.097 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.275 1.275 7 C -0.462 4.462 8 H 0.071 0.929 9 C 0.035 3.965 10 C -0.070 4.070 11 C -0.175 4.175 12 C 0.014 3.986 13 N -0.613 5.613 14 H 0.407 0.593 15 C 0.205 3.795 16 N -0.500 5.500 17 C -0.002 4.002 18 C 0.156 3.844 19 N -0.870 5.870 20 H 0.275 0.725 21 H 0.128 0.872 22 H 0.089 0.911 23 H 0.194 0.806 24 H 0.391 0.609 25 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.427 -5.074 1.919 5.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.140 4.140 3 Si 0.729 3.271 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.201 1.201 7 C -0.494 4.494 8 H 0.089 0.911 9 C 0.028 3.972 10 C -0.091 4.091 11 C -0.198 4.198 12 C -0.093 4.093 13 N -0.228 5.228 14 H 0.243 0.757 15 C -0.082 4.082 16 N -0.222 5.222 17 C -0.121 4.121 18 C 0.051 3.949 19 N -0.410 5.410 20 H 0.085 0.915 21 H 0.146 0.854 22 H 0.107 0.893 23 H 0.210 0.790 24 H 0.220 0.780 25 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 0.067 -5.145 1.367 5.323 hybrid contribution -0.550 0.798 0.524 1.102 sum -0.483 -4.346 1.890 4.764 Atomic orbital electron populations 1.69867 1.07187 1.28363 1.39048 1.25686 0.94666 1.00628 0.93014 0.86347 0.80807 0.81732 0.78225 1.18775 1.20428 1.20087 1.18973 0.97018 0.90827 1.42623 0.91073 1.16956 0.95009 0.90068 0.95201 1.20759 0.96047 0.96141 0.96171 1.19197 1.03378 0.89677 1.07595 1.18493 0.99705 0.84980 1.06128 1.42714 1.29007 1.06216 1.44854 0.75725 1.24646 0.90484 0.97309 0.95794 1.70111 1.24412 1.02763 1.24938 1.18219 0.99006 0.90139 1.04704 1.17077 0.91455 0.90471 0.95930 1.41712 1.33208 1.09821 1.56230 0.91464 0.85412 0.89326 0.78966 0.77979 0.79027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -21.29 10.98 55.54 0.61 -20.68 15 2 C 0.07 1.87 5.14 -17.33 -0.09 1.78 15 3 Si 0.90 18.95 29.59 -169.99 -5.03 13.92 15 4 H -0.26 -5.47 7.11 56.52 0.40 -5.07 15 5 H -0.28 -5.81 7.11 56.52 0.40 -5.41 15 6 H -0.28 -5.71 7.11 56.52 0.40 -5.31 15 7 C -0.46 -12.11 8.47 -37.95 -0.32 -12.43 15 8 H 0.07 1.78 6.69 -52.49 -0.35 1.43 15 9 C 0.04 0.94 5.57 -106.63 -0.59 0.35 15 10 C -0.07 -1.80 8.58 -39.32 -0.34 -2.13 15 11 C -0.17 -4.10 9.98 -39.83 -0.40 -4.50 15 12 C 0.01 0.32 7.30 -83.83 -0.61 -0.29 15 13 N -0.61 -10.94 6.22 -11.63 -0.07 -11.01 15 14 H 0.41 5.52 8.96 -40.82 -0.37 5.16 15 15 C 0.20 3.60 12.97 -89.73 -1.16 2.43 15 16 N -0.50 -10.99 11.28 -11.94 -0.13 -11.13 15 17 C 0.00 -0.06 7.07 -84.55 -0.60 -0.66 15 18 C 0.16 3.97 6.82 -82.99 -0.57 3.40 15 19 N -0.87 -19.11 8.97 32.89 0.29 -18.81 15 20 H 0.27 6.58 8.30 -40.82 -0.34 6.24 15 21 H 0.13 3.35 6.21 -52.49 -0.33 3.03 15 22 H 0.09 1.83 8.06 -52.48 -0.42 1.41 15 23 H 0.19 2.31 8.06 -52.49 -0.42 1.89 15 24 H 0.39 8.15 7.04 -40.82 -0.29 7.86 15 25 H 0.38 7.74 8.84 -40.82 -0.36 7.38 15 LS Contribution 222.43 15.07 3.35 3.35 Total: -1.00 -30.49 222.43 -7.33 -37.82 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: -1.67 Total: 18.60 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: -4.68 Total: -12.06 kcal Atomic # 7 Polarization: -62.33 SS G_CDS: 0.70 Total: -61.63 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.92 kcal Total LS contribution 3.35 Total: 3.35 kcal Total: -30.49 -7.33 -37.82 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307128879.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.937 kcal (2) G-P(sol) polarization free energy of solvation -30.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds