Wall clock time and date at job start Mon Mar 30 2020 02:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30977 * 1 3 3 Si 1.86798 * 120.00269 * 2 1 4 4 H 1.48504 * 109.46746 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46907 * 299.99541 * 3 2 1 6 6 H 1.48496 * 109.47348 * 59.99580 * 3 2 1 7 7 C 1.39812 * 119.99622 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99825 * 163.28172 * 7 2 1 9 9 C 1.40994 * 119.99802 * 343.26959 * 7 2 1 10 10 C 1.41087 * 120.09062 * 333.88451 * 9 7 2 11 11 C 1.35967 * 120.45026 * 179.72385 * 10 9 7 12 12 C 1.39741 * 120.51688 * 0.02562 * 11 10 9 13 13 N 1.37762 * 133.60193 * 179.97438 * 12 11 10 14 14 H 0.97000 * 126.30596 * 359.96480 * 13 12 11 15 15 C 1.36138 * 107.39672 * 180.02562 * 13 12 11 16 16 N 1.30054 * 110.05015 * 0.02562 * 15 13 12 17 17 C 1.35861 * 109.52559 * 359.97438 * 16 15 13 18 18 C 1.40168 * 133.38378 * 179.97438 * 17 16 15 19 19 N 1.38492 * 120.38873 * 0.02562 * 18 17 16 20 20 H 0.97005 * 119.99493 * 0.02562 * 1 2 3 21 21 H 1.07999 * 119.77623 * 359.73848 * 10 9 7 22 22 H 1.08006 * 119.74276 * 179.97438 * 11 10 9 23 23 H 1.08001 * 124.97676 * 179.97438 * 15 13 12 24 24 H 0.97000 * 119.99878 * 180.02562 * 19 18 17 25 25 H 0.96999 * 120.00284 * 0.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3098 0.0000 0.0000 3 14 2.2438 1.6177 0.0000 4 1 3.7038 1.3461 0.0006 5 1 1.8852 2.3963 -1.2126 6 1 1.8851 2.3965 1.2124 7 6 2.0088 -1.2109 0.0005 8 1 3.0545 -1.2308 -0.2685 9 6 1.3484 -2.4058 0.3526 10 6 0.2220 -2.3680 1.2013 11 6 -0.4237 -3.5153 1.5410 12 6 0.0185 -4.7488 1.0555 13 7 -0.4167 -6.0456 1.2193 14 1 -1.1745 -6.3342 1.7516 15 6 0.4135 -6.8478 0.4977 16 7 1.3236 -6.1309 -0.0933 17 6 1.1367 -4.8198 0.2099 18 6 1.8106 -3.6436 -0.1467 19 7 2.9160 -3.6945 -0.9795 20 1 -0.4849 0.8401 -0.0004 21 1 -0.1299 -1.4212 1.5835 22 1 -1.2846 -3.4731 2.1918 23 1 0.3293 -7.9222 0.4272 24 1 3.3783 -2.8771 -1.2224 25 1 3.2279 -4.5475 -1.3200 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307128879.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:36 Heat of formation + Delta-G solvation = 41.107016 kcal Electronic energy + Delta-G solvation = -12462.654282 eV Core-core repulsion = 10247.255372 eV Total energy + Delta-G solvation = -2215.398910 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.38028 -38.40000 -35.23839 -34.62325 -32.77894 -30.50741 -28.70379 -26.62754 -23.16459 -22.69736 -21.69359 -19.13852 -18.67879 -17.69830 -16.94081 -16.42892 -15.68168 -15.54741 -15.16807 -14.49611 -14.01083 -13.62113 -13.20780 -12.74082 -12.58747 -12.41646 -11.95035 -11.56607 -11.43887 -10.85852 -10.64510 -10.27340 -8.92931 -8.48519 -7.83841 -5.88236 0.80837 1.08919 1.45529 1.55630 1.59042 2.31727 2.37337 2.54035 2.89740 3.61626 3.79763 3.89460 4.41360 4.73670 4.90311 5.01598 5.21385 5.31697 5.52543 5.92383 5.96518 6.13173 6.21176 6.62361 6.90188 7.03933 7.08435 7.21870 7.46867 7.52933 8.57854 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.059012 B = 0.010455 C = 0.009094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.363498 B = 2677.547585 C = 3078.261925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.032 3.968 3 Si 0.976 3.024 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.270 1.270 7 C -0.490 4.490 8 H 0.071 0.929 9 C 0.002 3.998 10 C -0.096 4.096 11 C -0.175 4.175 12 C 0.003 3.997 13 N -0.597 5.597 14 H 0.430 0.570 15 C 0.239 3.761 16 N -0.539 5.539 17 C -0.027 4.027 18 C 0.136 3.864 19 N -0.862 5.862 20 H 0.280 0.720 21 H 0.113 0.887 22 H 0.113 0.887 23 H 0.257 0.743 24 H 0.394 0.606 25 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.684 -6.589 2.200 6.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.178 4.178 3 Si 0.799 3.201 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.195 1.195 7 C -0.522 4.522 8 H 0.089 0.911 9 C -0.006 4.006 10 C -0.117 4.117 11 C -0.199 4.199 12 C -0.106 4.106 13 N -0.213 5.213 14 H 0.271 0.729 15 C -0.048 4.048 16 N -0.261 5.261 17 C -0.144 4.144 18 C 0.030 3.970 19 N -0.403 5.403 20 H 0.090 0.910 21 H 0.131 0.869 22 H 0.131 0.869 23 H 0.272 0.728 24 H 0.223 0.777 25 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -0.208 -6.686 1.661 6.892 hybrid contribution -0.540 0.999 0.453 1.223 sum -0.748 -5.686 2.114 6.113 Atomic orbital electron populations 1.69940 1.08568 1.29434 1.39946 1.26478 0.95411 1.03697 0.92263 0.85248 0.79378 0.77220 0.78297 1.18427 1.19924 1.19526 1.19196 0.97214 0.91775 1.44056 0.91054 1.17266 0.96022 0.90958 0.96314 1.20715 0.97002 0.96508 0.97490 1.19363 1.03623 0.89465 1.07420 1.18586 0.99600 0.86648 1.05743 1.42693 1.29613 1.04261 1.44708 0.72938 1.25902 0.87611 0.99362 0.91925 1.70131 1.26898 1.01725 1.27365 1.18522 0.99530 0.91177 1.05214 1.17322 0.92343 0.90819 0.96502 1.41608 1.32519 1.10398 1.55733 0.90993 0.86932 0.86941 0.72782 0.77666 0.78093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -45.55 10.98 21.81 0.24 -45.31 15 2 C 0.03 1.66 5.14 85.20 0.44 2.10 15 3 Si 0.98 39.52 29.59 68.60 2.03 41.55 15 4 H -0.26 -10.28 7.11 99.48 0.71 -9.57 15 5 H -0.27 -10.78 7.11 99.48 0.71 -10.08 15 6 H -0.27 -10.60 7.11 99.48 0.71 -9.90 15 7 C -0.49 -26.51 8.47 23.33 0.20 -26.31 15 8 H 0.07 3.69 6.69 -2.91 -0.02 3.67 15 9 C 0.00 0.12 5.57 -21.17 -0.12 0.00 15 10 C -0.10 -5.08 8.58 22.44 0.19 -4.89 15 11 C -0.18 -8.18 9.98 22.11 0.22 -7.96 15 12 C 0.00 0.12 7.30 39.10 0.29 0.40 15 13 N -0.60 -19.04 6.22 -190.71 -1.19 -20.22 15 14 H 0.43 9.73 8.96 -92.71 -0.83 8.90 15 15 C 0.24 7.32 12.97 180.04 2.34 9.66 15 16 N -0.54 -22.36 11.28 -191.70 -2.16 -24.52 15 17 C -0.03 -1.28 7.07 39.51 0.28 -1.00 15 18 C 0.14 7.03 6.82 39.30 0.27 7.30 15 19 N -0.86 -38.42 8.97 -49.86 -0.45 -38.86 15 20 H 0.28 13.71 8.30 -92.70 -0.77 12.94 15 21 H 0.11 6.18 6.21 -2.91 -0.02 6.16 15 22 H 0.11 4.54 8.06 -2.91 -0.02 4.51 15 23 H 0.26 4.32 8.06 -2.91 -0.02 4.29 15 24 H 0.39 16.81 7.04 -92.71 -0.65 16.16 15 25 H 0.39 15.84 8.84 -92.71 -0.82 15.02 15 Total: -1.00 -67.51 222.43 1.54 -65.97 By element: Atomic # 1 Polarization: 43.15 SS G_CDS: -1.04 Total: 42.12 kcal Atomic # 6 Polarization: -24.81 SS G_CDS: 4.10 Total: -20.71 kcal Atomic # 7 Polarization: -125.37 SS G_CDS: -3.56 Total: -128.92 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 2.03 Total: 41.55 kcal Total: -67.51 1.54 -65.97 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307128879.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.077 kcal (2) G-P(sol) polarization free energy of solvation -67.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds