Wall clock time and date at job start Mon Mar 30 2020 02:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86794 * 120.00473 * 2 1 4 4 H 1.48498 * 109.47285 * 269.99968 * 3 2 1 5 5 H 1.48507 * 109.47060 * 29.99755 * 3 2 1 6 6 H 1.48497 * 109.47081 * 149.99651 * 3 2 1 7 7 C 1.37883 * 119.99660 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00029 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99834 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.46640 * 179.97438 * 9 7 2 11 11 C 1.36176 * 126.33172 * 265.03616 * 10 9 7 12 12 N 1.30149 * 110.10653 * 179.97438 * 11 10 9 13 13 C 1.35607 * 109.59445 * 0.02562 * 12 11 10 14 14 C 1.39522 * 134.57339 * 179.97438 * 13 12 11 15 15 N 1.31662 * 120.11580 * 180.02562 * 14 13 12 16 16 C 1.32250 * 122.38068 * 359.79332 * 15 14 13 17 17 C 1.36813 * 121.42267 * 0.44592 * 16 15 14 18 18 C 1.37456 * 126.32843 * 85.00523 * 10 9 7 19 19 H 0.97003 * 119.99490 * 0.02562 * 1 2 3 20 20 H 1.09005 * 109.47053 * 60.00127 * 9 7 2 21 21 H 1.09000 * 109.47038 * 299.99842 * 9 7 2 22 22 H 1.07997 * 124.94340 * 359.95667 * 11 10 9 23 23 H 1.07997 * 119.94075 * 359.97438 * 14 13 12 24 24 H 1.08005 * 119.28942 * 180.25986 * 16 15 14 25 25 H 1.08002 * 120.54674 * 179.81914 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4399 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.6550 -4.2877 -1.0924 12 7 3.4914 -5.2167 -0.7301 13 6 3.6321 -5.2013 0.6185 14 6 4.3746 -5.9475 1.5342 15 7 4.2945 -5.6829 2.8214 16 6 3.5279 -4.7171 3.2996 17 6 2.7625 -3.9393 2.4743 18 6 2.8053 -4.1690 1.1037 19 1 -0.4849 0.8401 -0.0004 20 1 0.6246 -2.5571 -0.8897 21 1 0.6239 -2.5567 0.8903 22 1 2.3619 -4.0821 -2.1113 23 1 5.0155 -6.7442 1.1865 24 1 3.5033 -4.5405 4.3648 25 1 2.1393 -3.1562 2.8803 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307214059.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:54 Heat of formation + Delta-G solvation = 73.893583 kcal Electronic energy + Delta-G solvation = -12290.999679 eV Core-core repulsion = 10077.022502 eV Total energy + Delta-G solvation = -2213.977178 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.69318 -37.96971 -34.27591 -32.50044 -30.80510 -29.34176 -27.47904 -23.74509 -23.29110 -22.07014 -20.17676 -17.11552 -16.98237 -16.61859 -15.32889 -14.82250 -14.66738 -13.97974 -13.81580 -13.09141 -12.90123 -12.23108 -11.99272 -11.67294 -11.21226 -10.99419 -10.47432 -10.35441 -9.65627 -9.61815 -9.19007 -8.81645 -8.26704 -7.73900 -6.44687 -4.54568 1.28707 2.01634 3.10291 3.17418 3.20162 3.32313 3.49644 4.15068 4.40038 4.68061 4.90154 4.91610 5.09884 5.56002 5.62299 5.85575 5.89117 6.17556 6.47446 6.74369 6.84477 7.04329 7.19333 7.46805 7.65608 7.78227 8.25954 8.49640 8.52669 9.14602 10.62963 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.043858 B = 0.009654 C = 0.008845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.275552 B = 2899.712320 C = 3164.947206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.069 3.931 3 Si 0.907 3.093 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.549 4.549 8 H 0.065 0.935 9 C 0.235 3.765 10 N -0.453 5.453 11 C 0.263 3.737 12 N -0.507 5.507 13 C -0.016 4.016 14 C 0.160 3.840 15 N -0.497 5.497 16 C 0.070 3.930 17 C -0.139 4.139 18 C 0.081 3.919 19 H 0.270 0.730 20 H 0.055 0.945 21 H 0.049 0.951 22 H 0.210 0.790 23 H 0.156 0.844 24 H 0.153 0.847 25 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.818 -5.152 1.535 6.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.135 4.135 3 Si 0.734 3.266 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.587 4.587 8 H 0.083 0.917 9 C 0.117 3.883 10 N -0.137 5.137 11 C -0.023 4.023 12 N -0.228 5.228 13 C -0.139 4.139 14 C -0.009 4.009 15 N -0.208 5.208 16 C -0.079 4.079 17 C -0.162 4.162 18 C -0.040 4.040 19 H 0.080 0.920 20 H 0.073 0.927 21 H 0.067 0.933 22 H 0.227 0.773 23 H 0.173 0.827 24 H 0.171 0.829 25 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.370 -5.873 1.658 6.971 hybrid contribution -0.692 2.249 -0.223 2.364 sum 2.678 -3.624 1.435 4.729 Atomic orbital electron populations 1.69913 1.06112 1.28014 1.48432 1.24942 0.94979 0.99643 0.93981 0.86331 0.79773 0.81941 0.78582 1.20125 1.20702 1.19581 1.21289 0.93730 0.89639 1.54021 0.91677 1.19835 0.86796 0.81522 1.00147 1.46152 1.35300 1.27883 1.04378 1.25365 0.93324 0.89495 0.94144 1.70368 1.19606 1.22503 1.10283 1.20223 1.02306 0.99559 0.91841 1.21912 0.95506 0.96885 0.86552 1.67581 1.20444 1.18292 1.14475 1.21928 0.93976 0.92305 0.99652 1.20798 1.02910 1.02410 0.90084 1.19027 0.97806 0.96604 0.90559 0.92013 0.92665 0.93336 0.77312 0.82673 0.82946 0.84909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.70 13.29 55.43 0.74 -22.97 15 2 C 0.07 1.78 5.46 -17.82 -0.10 1.68 15 3 Si 0.91 20.13 29.54 -169.99 -5.02 15.11 15 4 H -0.28 -6.04 7.11 56.52 0.40 -5.63 15 5 H -0.28 -6.16 7.11 56.52 0.40 -5.76 15 6 H -0.27 -6.07 7.11 56.52 0.40 -5.66 15 7 C -0.55 -14.10 9.39 -34.44 -0.32 -14.42 15 8 H 0.07 1.74 7.81 -52.48 -0.41 1.32 15 9 C 0.24 5.46 5.92 -5.19 -0.03 5.43 15 10 N -0.45 -9.58 2.78 -117.02 -0.32 -9.90 15 11 C 0.26 4.97 12.50 -89.62 -1.12 3.85 15 12 N -0.51 -10.01 11.27 -12.01 -0.14 -10.14 15 13 C -0.02 -0.32 7.28 -84.72 -0.62 -0.94 15 14 C 0.16 2.82 11.28 -17.15 -0.19 2.63 15 15 N -0.50 -8.74 10.33 -13.22 -0.14 -8.87 15 16 C 0.07 1.16 11.10 -17.89 -0.20 0.97 15 17 C -0.14 -2.61 10.09 -39.80 -0.40 -3.01 15 18 C 0.08 1.68 6.92 -84.05 -0.58 1.09 15 19 H 0.27 6.82 8.31 -40.82 -0.34 6.48 15 20 H 0.06 1.28 8.13 -51.93 -0.42 0.85 15 21 H 0.05 1.18 8.14 -51.93 -0.42 0.76 15 22 H 0.21 3.10 8.06 -52.49 -0.42 2.68 15 23 H 0.16 2.27 8.06 -52.49 -0.42 1.85 15 24 H 0.15 2.01 8.06 -52.48 -0.42 1.59 15 25 H 0.13 2.39 8.06 -52.49 -0.42 1.97 15 LS Contribution 233.08 15.07 3.51 3.51 Total: -1.00 -28.52 233.08 -7.01 -35.53 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: -2.08 Total: 0.44 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -3.56 Total: -2.72 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: 0.14 Total: -51.88 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -28.52 -7.01 -35.53 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307214059.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.425 kcal (2) G-P(sol) polarization free energy of solvation -28.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds