Wall clock time and date at job start Mon Mar 30 2020 02:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.39604 * 120.49699 * 350.62670 * 3 2 1 5 5 C 1.37737 * 120.12820 * 179.76921 * 4 3 2 6 6 C 1.39481 * 121.21517 * 0.51581 * 5 4 3 7 7 N 1.39302 * 119.49067 * 179.76206 * 6 5 4 8 8 N 1.36594 * 119.99825 * 359.97438 * 7 6 5 9 9 C 1.38250 * 121.02171 * 359.74523 * 6 5 4 10 10 C 1.40598 * 119.77359 * 359.97438 * 9 6 5 11 11 C 1.40854 * 120.57093 * 179.97438 * 10 9 6 12 12 H 1.07996 * 120.00083 * 155.99152 * 11 10 9 13 13 C 1.40214 * 119.99955 * 335.98754 * 11 10 9 14 14 N 1.30666 * 119.99946 * 341.73455 * 13 11 10 15 15 Si 1.86798 * 119.99862 * 161.73631 * 13 11 10 16 16 H 1.48497 * 109.47270 * 60.00005 * 15 13 11 17 17 H 1.48500 * 109.47139 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47156 * 300.00130 * 15 13 11 19 19 H 1.07996 * 119.93377 * 359.97438 * 4 3 2 20 20 H 1.08006 * 119.39463 * 180.26398 * 5 4 3 21 21 H 0.96995 * 120.00068 * 179.97438 * 7 6 5 22 22 H 1.00901 * 111.00332 * 56.04256 * 8 7 6 23 23 H 1.00896 * 111.00004 * 180.02562 * 8 7 6 24 24 H 1.08000 * 120.11577 * 180.02562 * 9 6 5 25 25 H 0.97001 * 119.99947 * 185.03731 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2771 -1.1859 0.1959 5 6 4.6544 -1.1773 0.1897 6 6 5.3691 0.0054 0.0004 7 7 6.7617 -0.0265 0.0057 8 7 7.4170 -1.2098 0.1958 9 6 4.7167 1.2090 -0.1927 10 6 3.3113 1.2480 -0.2000 11 6 2.6294 2.4650 -0.3948 12 1 1.6208 2.4631 -0.7806 13 6 3.2602 3.6790 -0.0876 14 7 4.3074 3.6917 0.6938 15 14 2.6035 5.2780 -0.7955 16 1 1.2019 5.4788 -0.3480 17 1 3.4414 6.4095 -0.3232 18 1 2.6457 5.2170 -2.2787 19 1 2.7446 -2.1128 0.3493 20 1 5.1910 -2.1028 0.3382 21 1 7.2661 0.7915 -0.1256 22 1 7.1289 -1.8962 -0.4854 23 1 8.4169 -1.0769 0.1750 24 1 5.2847 2.1159 -0.3383 25 1 4.6997 4.5363 0.9653 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307271996.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:37 Heat of formation + Delta-G solvation = 49.252436 kcal Electronic energy + Delta-G solvation = -12114.195548 eV Core-core repulsion = 9899.149850 eV Total energy + Delta-G solvation = -2215.045698 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.76979 -37.67165 -36.53866 -35.38635 -31.75323 -31.55486 -27.91374 -27.20586 -23.44590 -22.61174 -19.42400 -18.82000 -18.59600 -17.33576 -16.77444 -15.62973 -15.22858 -14.84666 -14.47634 -14.43227 -14.01337 -13.55429 -13.31609 -13.10892 -12.93279 -12.74384 -12.20534 -11.94352 -11.77080 -11.33833 -11.05733 -9.74365 -9.38470 -8.75670 -7.71247 -6.47160 0.64802 1.11307 1.38625 1.48025 1.58601 2.15601 2.18112 2.45406 2.52751 2.76434 3.75552 3.84120 4.31859 4.60458 4.86379 5.07472 5.20224 5.29022 5.41089 5.81518 5.92267 6.03722 6.12590 6.22122 6.46610 6.79905 6.84792 7.05253 7.16697 7.62431 8.18745 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.026108 B = 0.013297 C = 0.009036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.217007 B = 2105.307676 C = 3097.842961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C 0.310 3.690 3 C -0.247 4.247 4 C 0.005 3.995 5 C -0.285 4.285 6 C 0.261 3.739 7 N -0.600 5.600 8 N -0.606 5.606 9 C -0.266 4.266 10 C 0.162 3.838 11 C -0.477 4.477 12 H 0.065 0.935 13 C 0.048 3.952 14 N -0.787 5.787 15 Si 0.975 3.025 16 H -0.270 1.270 17 H -0.256 1.256 18 H -0.258 1.258 19 H 0.124 0.876 20 H 0.129 0.871 21 H 0.403 0.597 22 H 0.337 0.663 23 H 0.365 0.635 24 H 0.116 0.884 25 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.296 -1.890 -2.347 9.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.226 5.226 2 C 0.002 3.998 3 C -0.254 4.254 4 C -0.016 4.016 5 C -0.308 4.308 6 C 0.156 3.844 7 N -0.324 5.324 8 N -0.233 5.233 9 C -0.291 4.291 10 C 0.156 3.844 11 C -0.505 4.505 12 H 0.084 0.916 13 C -0.172 4.172 14 N -0.410 5.410 15 Si 0.796 3.204 16 H -0.195 1.195 17 H -0.180 1.180 18 H -0.182 1.182 19 H 0.142 0.858 20 H 0.147 0.853 21 H 0.241 0.759 22 H 0.152 0.848 23 H 0.180 0.820 24 H 0.134 0.866 25 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.521 -1.947 -1.526 7.918 hybrid contribution 0.675 1.161 -1.118 1.747 sum 8.196 -0.786 -2.644 8.648 Atomic orbital electron populations 1.80970 1.13322 1.11142 1.17193 1.26070 0.92994 0.90447 0.90276 1.17110 0.82860 0.96545 1.28920 1.20567 0.93741 0.94848 0.92450 1.19967 0.92833 0.96966 1.21050 1.17624 0.81878 0.93862 0.90990 1.43192 1.02387 1.04889 1.81900 1.60010 1.09702 0.99123 1.54475 1.20414 0.93371 0.95738 1.19617 1.18330 0.91587 0.90054 0.84450 1.19750 1.00720 0.91591 1.38421 0.91645 1.26685 0.93772 1.04044 0.92738 1.69742 1.17823 1.30993 1.22444 0.85352 0.79096 0.76030 0.79969 1.19535 1.17966 1.18164 0.85804 0.85313 0.75878 0.84801 0.82019 0.86619 0.89218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.55 -27.86 18.54 19.01 0.35 -27.50 15 2 C 0.31 15.46 14.29 88.33 1.26 16.72 15 3 C -0.25 -11.89 5.95 -19.53 -0.12 -12.01 15 4 C 0.01 0.22 9.75 22.48 0.22 0.44 15 5 C -0.29 -10.99 9.29 22.45 0.21 -10.78 15 6 C 0.26 10.49 6.67 38.26 0.26 10.74 15 7 N -0.60 -18.73 6.63 -51.65 -0.34 -19.07 15 8 N -0.61 -14.50 9.55 37.02 0.35 -14.14 15 9 C -0.27 -12.40 8.52 22.85 0.19 -12.20 15 10 C 0.16 8.27 5.74 -19.89 -0.11 8.16 15 11 C -0.48 -24.94 8.58 23.39 0.20 -24.74 15 12 H 0.07 3.54 7.37 -2.91 -0.02 3.52 15 13 C 0.05 2.27 5.14 85.35 0.44 2.71 15 14 N -0.79 -37.20 10.96 21.87 0.24 -36.96 15 15 Si 0.97 36.52 29.60 68.60 2.03 38.55 15 16 H -0.27 -10.42 7.11 99.48 0.71 -9.71 15 17 H -0.26 -8.70 7.11 99.48 0.71 -7.99 15 18 H -0.26 -9.48 7.11 99.48 0.71 -8.77 15 19 H 0.12 4.36 8.06 -2.91 -0.02 4.34 15 20 H 0.13 4.26 6.92 -2.91 -0.02 4.24 15 21 H 0.40 11.45 8.82 -215.51 -1.90 9.55 15 22 H 0.34 7.29 8.38 -210.56 -1.76 5.53 15 23 H 0.36 6.09 9.21 -210.57 -1.94 4.15 15 24 H 0.12 5.51 6.17 -2.91 -0.02 5.49 15 25 H 0.30 12.48 8.30 -92.71 -0.77 11.72 15 Total: -1.00 -58.88 233.75 0.85 -58.03 By element: Atomic # 1 Polarization: 26.39 SS G_CDS: -4.33 Total: 22.05 kcal Atomic # 6 Polarization: -23.51 SS G_CDS: 2.55 Total: -20.96 kcal Atomic # 7 Polarization: -98.28 SS G_CDS: 0.60 Total: -97.68 kcal Atomic # 14 Polarization: 36.52 SS G_CDS: 2.03 Total: 38.55 kcal Total: -58.88 0.85 -58.03 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307271996.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.285 kcal (2) G-P(sol) polarization free energy of solvation -58.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds