Wall clock time and date at job start Mon Mar 30 2020 02:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43209 * 179.97438 * 2 1 4 4 C 1.39106 * 119.99617 * 2.83750 * 3 2 1 5 5 C 1.40516 * 119.73813 * 180.02562 * 4 3 2 6 6 C 1.41451 * 120.13422 * 180.02562 * 5 4 3 7 7 H 1.07992 * 120.00041 * 204.55227 * 6 5 4 8 8 C 1.39917 * 119.99476 * 24.55168 * 6 5 4 9 9 N 1.30830 * 120.00541 * 17.90102 * 8 6 5 10 10 Si 1.86801 * 119.99592 * 197.89242 * 8 6 5 11 11 H 1.48507 * 109.46679 * 94.69575 * 10 8 6 12 12 H 1.48503 * 109.47491 * 214.69383 * 10 8 6 13 13 H 1.48500 * 109.47543 * 334.69760 * 10 8 6 14 14 C 1.40659 * 119.73020 * 0.04021 * 5 4 3 15 15 C 1.38362 * 119.98939 * 359.95966 * 14 5 4 16 16 N 1.39715 * 119.87578 * 179.97438 * 15 14 5 17 17 N 1.36597 * 120.00457 * 180.02562 * 16 15 14 18 18 C 1.39068 * 120.26165 * 0.02562 * 15 14 5 19 19 H 1.08000 * 120.12846 * 359.97438 * 4 3 2 20 20 H 0.97004 * 120.00092 * 179.97438 * 9 8 6 21 21 H 1.08007 * 120.00484 * 180.23173 * 14 5 4 22 22 H 0.97007 * 119.99662 * 0.02562 * 16 15 14 23 23 H 1.00902 * 111.00150 * 180.02562 * 17 16 15 24 24 H 1.00903 * 111.00061 * 303.95590 * 17 16 15 25 25 H 1.07994 * 119.86529 * 179.97438 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2641 -1.2023 -0.0596 5 6 4.6692 -1.1954 -0.0588 6 6 5.3854 -2.4137 -0.1197 7 1 6.3922 -2.4681 0.2670 8 6 4.7892 -3.5482 -0.6811 9 7 3.7399 -3.4221 -1.4523 10 14 5.4917 -5.2430 -0.3296 11 1 4.7642 -5.8533 0.8122 12 1 5.3370 -6.1020 -1.5310 13 1 6.9323 -5.1212 0.0096 14 6 5.3607 0.0279 0.0032 15 6 4.6572 1.2178 0.0622 16 7 5.3464 2.4315 0.1243 17 7 4.6545 3.6078 0.1831 18 6 3.2665 1.2106 0.0610 19 1 2.7265 -2.1379 -0.1056 20 1 3.3269 -4.2087 -1.8417 21 1 6.4407 0.0386 0.0004 22 1 6.3165 2.4389 0.1256 23 1 5.2835 4.3958 0.2232 24 1 4.0184 3.6925 -0.5956 25 1 2.7238 2.1431 0.1077 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307364506.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:32 Heat of formation + Delta-G solvation = 68.588976 kcal Electronic energy + Delta-G solvation = -12010.691604 eV Core-core repulsion = 9796.484401 eV Total energy + Delta-G solvation = -2214.207203 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.32240 -36.19558 -35.33322 -33.45759 -30.44426 -29.80657 -26.09273 -25.40771 -22.46562 -20.60214 -18.67651 -16.88686 -16.27634 -15.55200 -14.99141 -14.60275 -13.85193 -13.56137 -13.03773 -12.85199 -12.14556 -11.98346 -11.77304 -11.60402 -11.21017 -10.85551 -10.62692 -10.26904 -10.10527 -9.74873 -9.25760 -8.30684 -7.62976 -6.88578 -6.27871 -4.49447 2.16848 2.82251 3.05156 3.07934 3.18893 3.55595 3.75347 3.88509 4.01956 4.64933 5.02876 5.54617 5.60785 6.38547 6.56046 6.73680 6.84893 6.97610 7.11381 7.23499 7.58717 7.64054 7.76642 7.97599 8.30116 8.38663 8.52733 8.76480 8.79994 8.89925 10.07545 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.031751 B = 0.010816 C = 0.008265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.661765 B = 2588.168046 C = 3387.003379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C 0.287 3.713 3 C 0.001 3.999 4 C -0.137 4.137 5 C 0.137 3.863 6 C -0.456 4.456 7 H 0.083 0.917 8 C 0.076 3.924 9 N -0.788 5.788 10 Si 0.910 3.090 11 H -0.267 1.267 12 H -0.277 1.277 13 H -0.261 1.261 14 C -0.268 4.268 15 C 0.236 3.764 16 N -0.615 5.615 17 N -0.602 5.602 18 C -0.250 4.250 19 H 0.126 0.874 20 H 0.284 0.716 21 H 0.098 0.902 22 H 0.394 0.606 23 H 0.341 0.659 24 H 0.325 0.675 25 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.028 4.424 0.533 6.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.156 5.156 2 C -0.027 4.027 3 C -0.003 4.003 4 C -0.160 4.160 5 C 0.134 3.866 6 C -0.486 4.486 7 H 0.101 0.899 8 C -0.143 4.143 9 N -0.413 5.413 10 Si 0.734 3.266 11 H -0.192 1.192 12 H -0.203 1.203 13 H -0.185 1.185 14 C -0.293 4.293 15 C 0.137 3.863 16 N -0.343 5.343 17 N -0.225 5.225 18 C -0.275 4.275 19 H 0.143 0.857 20 H 0.095 0.905 21 H 0.116 0.884 22 H 0.230 0.770 23 H 0.153 0.847 24 H 0.139 0.861 25 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.679 4.134 1.062 5.040 hybrid contribution 1.557 -0.366 -0.949 1.860 sum 4.236 3.769 0.113 5.671 Atomic orbital electron populations 1.81045 1.12736 1.09995 1.11808 1.26325 0.93273 0.91367 0.91712 1.15700 0.82558 0.95250 1.06821 1.21361 0.94495 0.95045 1.05124 1.17139 0.90885 0.91654 0.86950 1.19583 1.01304 0.93134 1.34534 0.89908 1.25942 0.94218 1.01616 0.92499 1.69806 1.18111 1.32509 1.20839 0.86264 0.80495 0.80905 0.78907 1.19206 1.20267 1.18462 1.20472 0.97692 0.90473 1.20697 1.17062 0.90694 0.83223 0.95346 1.43187 1.05257 0.99249 1.86604 1.60198 1.18353 0.95609 1.48337 1.19630 0.91687 0.95313 1.20915 0.85658 0.90539 0.88395 0.76966 0.84685 0.86123 0.87883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -10.97 18.54 41.84 0.78 -10.19 15 2 C 0.29 6.46 15.31 -22.47 -0.34 6.11 15 3 C 0.00 0.02 5.72 -107.05 -0.61 -0.59 15 4 C -0.14 -3.35 8.39 -38.40 -0.32 -3.67 15 5 C 0.14 3.36 5.57 -106.90 -0.60 2.76 15 6 C -0.46 -11.14 9.05 -37.73 -0.34 -11.48 15 7 H 0.08 1.93 7.91 -52.49 -0.41 1.51 15 8 C 0.08 1.79 5.13 -17.35 -0.09 1.70 15 9 N -0.79 -19.35 10.96 55.55 0.61 -18.74 15 10 Si 0.91 17.65 29.59 -169.99 -5.03 12.62 15 11 H -0.27 -5.18 7.11 56.52 0.40 -4.77 15 12 H -0.28 -5.32 7.11 56.52 0.40 -4.92 15 13 H -0.26 -4.97 7.11 56.52 0.40 -4.57 15 14 C -0.27 -5.89 9.61 -38.62 -0.37 -6.26 15 15 C 0.24 4.81 6.68 -83.91 -0.56 4.25 15 16 N -0.62 -9.98 6.65 32.34 0.22 -9.77 15 17 N -0.60 -8.28 9.58 60.35 0.58 -7.70 15 18 C -0.25 -5.31 9.07 -38.68 -0.35 -5.67 15 19 H 0.13 3.22 6.16 -52.49 -0.32 2.89 15 20 H 0.28 6.38 8.30 -40.82 -0.34 6.04 15 21 H 0.10 1.99 8.06 -52.48 -0.42 1.57 15 22 H 0.39 5.47 8.84 -185.15 -1.64 3.84 15 23 H 0.34 3.43 9.21 -181.36 -1.67 1.76 15 24 H 0.32 4.34 8.42 -181.36 -1.53 2.81 15 25 H 0.10 2.06 7.01 -52.49 -0.37 1.70 15 LS Contribution 235.07 15.07 3.54 3.54 Total: -1.00 -26.83 235.07 -8.39 -35.22 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -5.50 Total: 7.86 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: -3.59 Total: -12.83 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: 2.18 Total: -46.41 kcal Atomic # 14 Polarization: 17.65 SS G_CDS: -5.03 Total: 12.62 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -26.83 -8.39 -35.22 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307364506.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.811 kcal (2) G-P(sol) polarization free energy of solvation -26.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds