Wall clock time and date at job start Mon Mar 30 2020 02:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46941 * 2 1 4 4 C 1.53237 * 109.46626 * 240.00591 * 2 1 3 5 5 S 1.81746 * 108.79733 * 182.34099 * 4 2 1 6 6 O 1.42102 * 109.47406 * 298.50678 * 5 4 2 7 7 C 1.81739 * 102.30179 * 54.54215 * 5 4 2 8 8 C 1.53241 * 108.80047 * 305.45580 * 7 5 4 9 9 N 1.46375 * 109.46541 * 119.99055 * 2 1 3 10 10 C 1.36938 * 119.64750 * 5.11760 * 9 2 1 11 11 H 1.07997 * 119.99811 * 329.76946 * 10 9 2 12 12 C 1.38808 * 120.00155 * 149.77791 * 10 9 2 13 13 N 1.31618 * 120.00447 * 342.87522 * 12 10 9 14 14 Si 1.86806 * 120.00108 * 162.87641 * 12 10 9 15 15 H 1.48496 * 109.47412 * 89.99492 * 14 12 10 16 16 H 1.48501 * 109.47150 * 210.00148 * 14 12 10 17 17 H 1.48500 * 109.47076 * 329.99634 * 14 12 10 18 18 H 1.09000 * 109.47391 * 300.01278 * 1 2 3 19 19 H 1.09004 * 109.46534 * 60.00879 * 1 2 3 20 20 H 1.09002 * 109.47384 * 180.02562 * 1 2 3 21 21 H 1.08991 * 109.58467 * 302.13433 * 4 2 1 22 22 H 1.08998 * 109.58388 * 62.55552 * 4 2 1 23 23 H 1.09008 * 109.57695 * 185.66304 * 7 5 4 24 24 H 1.09001 * 109.58331 * 65.25326 * 7 5 4 25 25 H 1.08996 * 109.46975 * 297.65284 * 8 7 5 26 26 H 1.09010 * 109.46332 * 177.66203 * 8 7 5 27 27 H 0.96994 * 120.00492 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0407 -0.7223 -1.2513 5 16 3.8566 -0.7728 -1.1982 6 8 4.3677 0.5532 -1.2006 7 6 4.1756 -1.5418 0.4173 8 6 3.4488 -0.7366 1.4997 9 7 2.0178 -0.6898 1.1953 10 6 1.1259 -1.2985 2.0375 11 1 0.1252 -0.9054 2.1397 12 6 1.5081 -2.4204 2.7599 13 7 2.5786 -3.0988 2.4048 14 14 0.5029 -2.9678 4.2363 15 1 -0.5497 -3.9172 3.7940 16 1 1.3919 -3.6371 5.2197 17 1 -0.1324 -1.7840 4.8690 18 1 -0.3634 0.5140 0.8899 19 1 -0.3632 0.5137 -0.8901 20 1 -0.3634 -1.0277 0.0005 21 1 1.6474 -1.7385 -1.2726 22 1 1.7162 -0.1840 -2.1418 23 1 5.2470 -1.5396 0.6177 24 1 3.8047 -2.5668 0.4135 25 1 3.8476 0.2774 1.5275 26 1 3.5988 -1.2127 2.4688 27 1 2.8455 -3.8830 2.9094 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307510431.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:21 Heat of formation + Delta-G solvation = -37.249756 kcal Electronic energy + Delta-G solvation = -12117.448843 eV Core-core repulsion = 10001.803329 eV Total energy + Delta-G solvation = -2115.645514 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 203.072 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.78146 -36.54739 -34.44373 -32.85356 -30.31181 -28.04055 -25.97894 -23.56308 -21.45984 -18.65152 -18.15771 -17.13401 -16.22328 -16.08213 -15.73846 -15.25555 -14.91689 -14.44294 -13.59362 -13.30481 -13.16579 -12.95354 -12.73922 -12.63045 -12.35229 -12.25684 -12.01070 -11.90646 -11.46325 -10.70213 -10.53645 -9.09972 -8.66082 -7.89320 -5.38191 1.05022 1.45676 1.49268 1.56595 1.87658 2.48671 3.06126 3.27286 3.43300 4.11192 4.29384 4.41338 4.51060 4.64285 4.74105 4.77107 4.98530 5.03983 5.32212 5.34813 5.45724 5.65781 5.78090 6.38958 7.11051 7.77605 8.26176 9.16193 Molecular weight = 203.07amu Principal moments of inertia in cm(-1) A = 0.048793 B = 0.013757 C = 0.011681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.718434 B = 2034.771434 C = 2396.506667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.158 3.842 3 H 0.013 0.987 4 C -0.444 4.444 5 S 1.281 4.719 6 O -0.931 6.931 7 C -0.428 4.428 8 C 0.171 3.829 9 N -0.606 5.606 10 C -0.273 4.273 11 H 0.070 0.930 12 C -0.034 4.034 13 N -0.911 5.911 14 Si 0.959 3.041 15 H -0.280 1.280 16 H -0.293 1.293 17 H -0.282 1.282 18 H 0.040 0.960 19 H 0.072 0.928 20 H 0.058 0.942 21 H 0.126 0.874 22 H 0.122 0.878 23 H 0.097 0.903 24 H 0.133 0.867 25 H -0.013 1.013 26 H 0.065 0.935 27 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.364 -1.165 -7.629 7.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.051 3.949 3 H 0.030 0.970 4 C -0.585 4.585 5 S 1.483 4.517 6 O -0.927 6.927 7 C -0.568 4.568 8 C 0.044 3.956 9 N -0.330 5.330 10 C -0.403 4.403 11 H 0.088 0.912 12 C -0.232 4.232 13 N -0.555 5.555 14 Si 0.788 3.212 15 H -0.207 1.207 16 H -0.220 1.220 17 H -0.207 1.207 18 H 0.059 0.941 19 H 0.091 0.909 20 H 0.078 0.922 21 H 0.144 0.856 22 H 0.140 0.860 23 H 0.115 0.885 24 H 0.151 0.849 25 H 0.005 0.995 26 H 0.083 0.917 27 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 0.385 -0.951 -8.248 8.312 hybrid contribution -1.122 0.798 2.795 3.116 sum -0.737 -0.152 -5.453 5.505 Atomic orbital electron populations 1.21719 0.93584 1.02010 1.00670 1.20486 0.96095 0.92502 0.85768 0.96957 1.27908 1.19612 1.08048 1.02915 1.68830 0.86684 0.96719 0.99513 1.92891 1.74005 1.41675 1.84089 1.27707 1.04458 1.10241 1.14439 1.20323 0.83172 0.92778 0.99298 1.44366 1.02378 1.62579 1.23679 1.19391 0.96146 1.06050 1.18686 0.91211 1.25704 0.99192 0.95816 1.02448 1.70049 1.27504 1.17972 1.39989 0.85424 0.78128 0.77706 0.79948 1.20654 1.21951 1.20734 0.94137 0.90881 0.92249 0.85603 0.85962 0.88486 0.84916 0.99480 0.91676 0.93812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.54 7.92 71.98 0.57 -3.97 15 2 C 0.16 6.76 3.32 45.09 0.15 6.91 15 3 H 0.01 0.58 8.14 -2.38 -0.02 0.57 15 4 C -0.44 -14.99 5.93 72.06 0.43 -14.57 15 5 S 1.28 42.68 13.71 -56.49 -0.77 41.91 15 6 O -0.93 -42.05 18.14 -148.98 -2.70 -44.75 15 7 C -0.43 -17.36 6.44 72.06 0.46 -16.89 15 8 C 0.17 8.54 5.36 86.48 0.46 9.01 15 9 N -0.61 -30.29 2.80 -677.73 -1.90 -32.19 15 10 C -0.27 -14.42 8.42 84.03 0.71 -13.71 15 11 H 0.07 3.63 6.12 -2.91 -0.02 3.61 15 12 C -0.03 -1.81 4.85 84.86 0.41 -1.39 15 13 N -0.91 -48.80 9.97 21.65 0.22 -48.59 15 14 Si 0.96 43.19 29.59 68.60 2.03 45.22 15 15 H -0.28 -12.28 7.11 99.48 0.71 -11.57 15 16 H -0.29 -13.29 7.11 99.48 0.71 -12.59 15 17 H -0.28 -12.65 7.11 99.48 0.71 -11.94 15 18 H 0.04 1.57 7.30 -2.39 -0.02 1.56 15 19 H 0.07 2.20 8.14 -2.38 -0.02 2.18 15 20 H 0.06 2.28 7.61 -2.39 -0.02 2.26 15 21 H 0.13 4.06 8.14 -2.39 -0.02 4.04 15 22 H 0.12 3.40 8.14 -2.39 -0.02 3.38 15 23 H 0.10 3.61 8.14 -2.38 -0.02 3.59 15 24 H 0.13 5.63 6.94 -2.39 -0.02 5.62 15 25 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 15 26 H 0.06 3.58 6.02 -2.38 -0.01 3.57 15 27 H 0.25 13.17 8.31 -92.71 -0.77 12.40 15 Total: -1.00 -68.23 228.93 1.21 -67.02 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: 1.15 Total: 6.00 kcal Atomic # 6 Polarization: -37.82 SS G_CDS: 3.19 Total: -34.63 kcal Atomic # 7 Polarization: -79.09 SS G_CDS: -1.68 Total: -80.77 kcal Atomic # 8 Polarization: -42.05 SS G_CDS: -2.70 Total: -44.75 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Atomic # 16 Polarization: 42.68 SS G_CDS: -0.77 Total: 41.91 kcal Total: -68.23 1.21 -67.02 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307510431.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.769 kcal (2) G-P(sol) polarization free energy of solvation -68.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds