Wall clock time and date at job start Mon Mar 30 2020 02:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.46722 * 2 1 4 4 C 1.53195 * 109.45201 * 240.02984 * 2 1 3 5 5 S 1.81746 * 108.80116 * 182.35036 * 4 2 1 6 6 O 1.42097 * 109.46792 * 170.56745 * 5 4 2 7 7 C 1.81742 * 102.30632 * 54.52893 * 5 4 2 8 8 C 1.53236 * 108.79908 * 305.46400 * 7 5 4 9 9 N 1.46374 * 109.46535 * 119.99517 * 2 1 3 10 10 C 1.36938 * 119.65264 * 5.08580 * 9 2 1 11 11 H 1.07998 * 119.99655 * 329.77659 * 10 9 2 12 12 C 1.38807 * 120.00147 * 149.77033 * 10 9 2 13 13 N 1.31621 * 120.00067 * 342.87811 * 12 10 9 14 14 Si 1.86806 * 120.00031 * 162.87677 * 12 10 9 15 15 H 1.48508 * 109.46826 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46883 * 120.00130 * 14 12 10 17 17 H 1.48496 * 109.47118 * 240.00034 * 14 12 10 18 18 H 1.09002 * 109.46968 * 300.00606 * 1 2 3 19 19 H 1.09003 * 109.47149 * 60.00070 * 1 2 3 20 20 H 1.09003 * 109.47668 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.59001 * 62.54765 * 4 2 1 22 22 H 1.09002 * 109.57407 * 302.13942 * 4 2 1 23 23 H 1.09000 * 109.57964 * 65.25223 * 7 5 4 24 24 H 1.08993 * 109.58035 * 185.52592 * 7 5 4 25 25 H 1.09000 * 109.47012 * 177.66182 * 8 7 5 26 26 H 1.09007 * 109.46733 * 297.65065 * 8 7 5 27 27 H 0.97005 * 120.00046 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0402 -0.7216 -1.2514 5 16 3.8561 -0.7727 -1.1986 6 8 4.3362 -1.6225 -2.2314 7 6 4.1753 -1.5422 0.4166 8 6 3.4489 -0.7372 1.4993 9 7 2.0178 -0.6899 1.1952 10 6 1.1259 -1.2981 2.0378 11 1 0.1254 -0.9047 2.1402 12 6 1.5078 -2.4202 2.7601 13 7 2.5780 -3.0990 2.4045 14 14 0.5030 -2.9671 4.2369 15 1 -0.6433 -2.0419 4.4256 16 1 -0.0050 -4.3435 4.0077 17 1 1.3580 -2.9507 5.4509 18 1 -0.3633 0.5139 0.8900 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0277 0.0005 21 1 1.7155 -0.1831 -2.1417 22 1 1.6466 -1.7379 -1.2728 23 1 3.8041 -2.5671 0.4126 24 1 5.2469 -1.5425 0.6157 25 1 3.5989 -1.2134 2.4682 26 1 3.8479 0.2768 1.5273 27 1 2.8451 -3.8830 2.9095 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307510432.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:23 Heat of formation + Delta-G solvation = -15.412025 kcal Electronic energy + Delta-G solvation = -12032.211258 eV Core-core repulsion = 9917.512698 eV Total energy + Delta-G solvation = -2114.698559 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 203.072 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -36.99455 -34.81385 -32.61693 -30.99752 -28.50543 -26.48066 -24.08337 -21.80252 -19.71425 -16.94604 -16.24626 -15.30668 -14.48305 -14.22831 -14.03174 -13.57181 -13.30101 -12.84524 -11.95790 -11.62050 -11.49069 -11.23618 -10.91378 -10.82172 -10.73207 -10.44465 -10.20800 -10.02249 -9.60210 -8.93615 -8.55060 -7.43887 -6.81232 -5.88836 -3.36913 2.49189 3.31248 3.39653 3.40295 3.41648 4.40977 4.58883 5.21602 5.28472 5.74433 5.93232 6.05484 6.20603 6.28301 6.32540 6.50619 6.51927 6.64299 6.89337 7.07507 7.33128 7.50718 7.77138 8.37398 9.11161 9.73489 10.22981 11.17729 Molecular weight = 203.07amu Principal moments of inertia in cm(-1) A = 0.045593 B = 0.013617 C = 0.011498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.982603 B = 2055.776536 C = 2434.627143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.191 3.809 3 H 0.050 0.950 4 C -0.441 4.441 5 S 1.186 4.814 6 O -0.891 6.891 7 C -0.423 4.423 8 C 0.191 3.809 9 N -0.594 5.594 10 C -0.260 4.260 11 H 0.075 0.925 12 C 0.004 3.996 13 N -0.898 5.898 14 Si 0.902 3.098 15 H -0.276 1.276 16 H -0.292 1.292 17 H -0.288 1.288 18 H 0.057 0.943 19 H 0.040 0.960 20 H 0.059 0.941 21 H 0.093 0.907 22 H 0.082 0.918 23 H 0.111 0.889 24 H 0.088 0.912 25 H 0.095 0.905 26 H 0.022 0.978 27 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.371 8.497 -2.087 8.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.082 3.918 3 H 0.067 0.933 4 C -0.582 4.582 5 S 1.389 4.611 6 O -0.887 6.887 7 C -0.565 4.565 8 C 0.064 3.936 9 N -0.317 5.317 10 C -0.390 4.390 11 H 0.092 0.908 12 C -0.195 4.195 13 N -0.542 5.542 14 Si 0.731 3.269 15 H -0.201 1.201 16 H -0.219 1.219 17 H -0.215 1.215 18 H 0.076 0.924 19 H 0.059 0.941 20 H 0.078 0.922 21 H 0.111 0.889 22 H 0.101 0.899 23 H 0.130 0.870 24 H 0.106 0.894 25 H 0.113 0.887 26 H 0.039 0.961 27 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.113 8.655 -2.738 9.146 hybrid contribution -1.347 -2.816 0.820 3.228 sum -0.234 5.839 -1.918 6.150 Atomic orbital electron populations 1.21822 0.95512 1.02096 0.99767 1.20117 0.93904 0.93736 0.83998 0.93274 1.28087 1.18952 1.06465 1.04683 1.69347 0.88654 1.17524 0.85543 1.92995 1.73490 1.72607 1.49573 1.27839 1.04460 1.11741 1.12455 1.20285 0.81779 0.93792 0.97745 1.44299 1.02722 1.62407 1.22254 1.19291 0.96197 1.06079 1.17399 0.90753 1.25148 0.98070 0.95565 1.00698 1.70003 1.26847 1.17984 1.39336 0.86243 0.79648 0.78118 0.82852 1.20129 1.21897 1.21483 0.92412 0.94127 0.92159 0.88897 0.89895 0.87048 0.89384 0.88737 0.96051 0.93624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 7.91 37.16 0.29 -2.09 15 2 C 0.19 3.59 3.32 -67.90 -0.23 3.36 15 3 H 0.05 0.78 8.14 -51.93 -0.42 0.36 15 4 C -0.44 -8.26 5.93 37.26 0.22 -8.04 15 5 S 1.19 21.68 13.71 -107.50 -1.47 20.21 15 6 O -0.89 -21.59 18.14 -35.23 -0.64 -22.23 15 7 C -0.42 -8.87 6.44 37.28 0.24 -8.63 15 8 C 0.19 4.09 5.36 -3.98 -0.02 4.07 15 9 N -0.59 -13.51 2.80 -165.59 -0.46 -13.97 15 10 C -0.26 -6.60 8.42 -15.06 -0.13 -6.73 15 11 H 0.07 1.85 6.12 -52.49 -0.32 1.52 15 12 C 0.00 0.11 4.85 -17.43 -0.08 0.03 15 13 N -0.90 -24.86 9.97 55.49 0.55 -24.31 15 14 Si 0.90 20.97 29.59 -169.99 -5.03 15.94 15 15 H -0.28 -6.26 7.11 56.52 0.40 -5.86 15 16 H -0.29 -6.99 7.11 56.52 0.40 -6.59 15 17 H -0.29 -6.74 7.11 56.52 0.40 -6.34 15 18 H 0.06 1.02 7.30 -51.93 -0.38 0.64 15 19 H 0.04 0.60 8.14 -51.93 -0.42 0.17 15 20 H 0.06 1.21 7.61 -51.93 -0.40 0.81 15 21 H 0.09 1.47 8.14 -51.93 -0.42 1.05 15 22 H 0.08 1.85 8.14 -51.93 -0.42 1.43 15 23 H 0.11 2.87 6.94 -51.93 -0.36 2.51 15 24 H 0.09 1.65 8.14 -51.93 -0.42 1.23 15 25 H 0.09 2.31 6.02 -51.93 -0.31 2.00 15 26 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 15 27 H 0.25 6.90 8.31 -40.82 -0.34 6.56 15 LS Contribution 228.93 15.07 3.45 3.45 Total: -1.00 -32.73 228.93 -6.75 -39.47 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: -3.44 Total: -0.54 kcal Atomic # 6 Polarization: -18.32 SS G_CDS: 0.30 Total: -18.02 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 0.09 Total: -38.28 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -0.64 Total: -22.23 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.94 kcal Atomic # 16 Polarization: 21.68 SS G_CDS: -1.47 Total: 20.21 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -32.73 -6.75 -39.47 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307510432.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.061 kcal (2) G-P(sol) polarization free energy of solvation -32.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds