Wall clock time and date at job start Mon Mar 30 2020 02:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.46722 * 2 1 4 4 C 1.53195 * 109.45201 * 240.02984 * 2 1 3 5 5 S 1.81746 * 108.80116 * 182.35036 * 4 2 1 6 6 O 1.42097 * 109.46792 * 170.56745 * 5 4 2 7 7 C 1.81742 * 102.30632 * 54.52893 * 5 4 2 8 8 C 1.53236 * 108.79908 * 305.46400 * 7 5 4 9 9 N 1.46374 * 109.46535 * 119.99517 * 2 1 3 10 10 C 1.36938 * 119.65264 * 5.08580 * 9 2 1 11 11 H 1.07998 * 119.99655 * 329.77659 * 10 9 2 12 12 C 1.38807 * 120.00147 * 149.77033 * 10 9 2 13 13 N 1.31621 * 120.00067 * 342.87811 * 12 10 9 14 14 Si 1.86806 * 120.00031 * 162.87677 * 12 10 9 15 15 H 1.48508 * 109.46826 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46883 * 120.00130 * 14 12 10 17 17 H 1.48496 * 109.47118 * 240.00034 * 14 12 10 18 18 H 1.09002 * 109.46968 * 300.00606 * 1 2 3 19 19 H 1.09003 * 109.47149 * 60.00070 * 1 2 3 20 20 H 1.09003 * 109.47668 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.59001 * 62.54765 * 4 2 1 22 22 H 1.09002 * 109.57407 * 302.13942 * 4 2 1 23 23 H 1.09000 * 109.57964 * 65.25223 * 7 5 4 24 24 H 1.08993 * 109.58035 * 185.52592 * 7 5 4 25 25 H 1.09000 * 109.47012 * 177.66182 * 8 7 5 26 26 H 1.09007 * 109.46733 * 297.65065 * 8 7 5 27 27 H 0.97005 * 120.00046 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0402 -0.7216 -1.2514 5 16 3.8561 -0.7727 -1.1986 6 8 4.3362 -1.6225 -2.2314 7 6 4.1753 -1.5422 0.4166 8 6 3.4489 -0.7372 1.4993 9 7 2.0178 -0.6899 1.1952 10 6 1.1259 -1.2981 2.0378 11 1 0.1254 -0.9047 2.1402 12 6 1.5078 -2.4202 2.7601 13 7 2.5780 -3.0990 2.4045 14 14 0.5030 -2.9671 4.2369 15 1 -0.6433 -2.0419 4.4256 16 1 -0.0050 -4.3435 4.0077 17 1 1.3580 -2.9507 5.4509 18 1 -0.3633 0.5139 0.8900 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0277 0.0005 21 1 1.7155 -0.1831 -2.1417 22 1 1.6466 -1.7379 -1.2728 23 1 3.8041 -2.5671 0.4126 24 1 5.2469 -1.5425 0.6157 25 1 3.5989 -1.2134 2.4682 26 1 3.8479 0.2768 1.5273 27 1 2.8451 -3.8830 2.9095 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307510432.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:23 Heat of formation + Delta-G solvation = -39.545915 kcal Electronic energy + Delta-G solvation = -12033.257782 eV Core-core repulsion = 9917.512698 eV Total energy + Delta-G solvation = -2115.745083 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 203.072 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.66737 -36.63465 -34.36248 -32.74897 -30.27817 -27.97602 -25.95481 -23.44441 -21.37984 -18.63883 -17.96754 -17.07415 -16.11581 -15.94963 -15.73584 -15.25872 -14.96180 -14.62906 -13.60256 -13.27518 -13.09552 -13.05650 -12.66519 -12.57209 -12.33564 -12.19264 -11.88066 -11.74275 -11.31228 -10.68335 -10.43263 -9.10761 -8.64881 -7.84685 -5.33058 0.95918 1.44414 1.48692 1.56805 1.83091 2.52264 2.98309 3.31713 3.59201 4.16710 4.44709 4.57646 4.62899 4.65750 4.86577 4.96002 4.99278 5.16746 5.41223 5.56824 5.61968 5.74088 5.85527 6.46013 7.20331 7.92480 8.33244 9.18813 Molecular weight = 203.07amu Principal moments of inertia in cm(-1) A = 0.045593 B = 0.013617 C = 0.011498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.982603 B = 2055.776536 C = 2434.627143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.181 3.819 3 H 0.099 0.901 4 C -0.442 4.442 5 S 1.281 4.719 6 O -0.946 6.946 7 C -0.430 4.430 8 C 0.189 3.811 9 N -0.612 5.612 10 C -0.252 4.252 11 H 0.079 0.921 12 C -0.053 4.053 13 N -0.928 5.928 14 Si 0.956 3.044 15 H -0.263 1.263 16 H -0.306 1.306 17 H -0.292 1.292 18 H 0.059 0.941 19 H 0.077 0.923 20 H 0.026 0.974 21 H 0.132 0.868 22 H 0.040 0.960 23 H 0.058 0.942 24 H 0.106 0.894 25 H 0.058 0.942 26 H 0.072 0.928 27 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.077 11.007 -2.691 11.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.074 3.926 3 H 0.117 0.883 4 C -0.583 4.583 5 S 1.484 4.516 6 O -0.942 6.942 7 C -0.572 4.572 8 C 0.062 3.938 9 N -0.335 5.335 10 C -0.382 4.382 11 H 0.097 0.903 12 C -0.248 4.248 13 N -0.575 5.575 14 Si 0.785 3.215 15 H -0.187 1.187 16 H -0.234 1.234 17 H -0.219 1.219 18 H 0.078 0.922 19 H 0.096 0.904 20 H 0.045 0.955 21 H 0.150 0.850 22 H 0.059 0.941 23 H 0.077 0.923 24 H 0.124 0.876 25 H 0.076 0.924 26 H 0.089 0.911 27 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 0.657 11.190 -3.343 11.698 hybrid contribution -1.258 -3.523 0.943 3.858 sum -0.601 7.668 -2.400 8.057 Atomic orbital electron populations 1.21800 0.94846 1.00541 1.01738 1.20516 0.94705 0.95306 0.82092 0.88338 1.28129 1.18857 1.04606 1.06745 1.68610 0.87156 1.14028 0.81793 1.92869 1.75447 1.73852 1.52021 1.27873 1.05530 1.08823 1.14941 1.20322 0.81607 0.95845 0.96004 1.44613 1.02932 1.62322 1.23597 1.19608 0.96615 1.05205 1.16820 0.90307 1.25796 0.99342 0.96412 1.03240 1.70186 1.28616 1.18415 1.40250 0.85381 0.78744 0.77059 0.80281 1.18676 1.23382 1.21911 0.92233 0.90411 0.95452 0.84997 0.94118 0.92335 0.87598 0.92380 0.91054 0.94776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.26 7.91 71.98 0.57 -3.69 15 2 C 0.18 6.15 3.32 45.08 0.15 6.30 15 3 H 0.10 2.51 8.14 -2.39 -0.02 2.49 15 4 C -0.44 -15.35 5.93 72.05 0.43 -14.92 15 5 S 1.28 43.76 13.71 -56.49 -0.77 42.99 15 6 O -0.95 -44.60 18.14 -148.98 -2.70 -47.30 15 7 C -0.43 -17.82 6.44 72.06 0.46 -17.36 15 8 C 0.19 7.83 5.36 86.48 0.46 8.29 15 9 N -0.61 -26.79 2.80 -677.81 -1.90 -28.69 15 10 C -0.25 -12.63 8.42 84.03 0.71 -11.93 15 11 H 0.08 3.82 6.12 -2.91 -0.02 3.80 15 12 C -0.05 -2.81 4.85 84.86 0.41 -2.40 15 13 N -0.93 -53.21 9.97 21.65 0.22 -52.99 15 14 Si 0.96 43.85 29.59 68.60 2.03 45.88 15 15 H -0.26 -11.29 7.11 99.48 0.71 -10.59 15 16 H -0.31 -14.58 7.11 99.48 0.71 -13.88 15 17 H -0.29 -13.44 7.11 99.48 0.71 -12.73 15 18 H 0.06 1.91 7.30 -2.39 -0.02 1.89 15 19 H 0.08 1.94 8.14 -2.39 -0.02 1.93 15 20 H 0.03 1.04 7.61 -2.39 -0.02 1.02 15 21 H 0.13 3.57 8.14 -2.39 -0.02 3.55 15 22 H 0.04 1.77 8.14 -2.39 -0.02 1.76 15 23 H 0.06 3.09 6.94 -2.39 -0.02 3.08 15 24 H 0.11 3.88 8.14 -2.39 -0.02 3.86 15 25 H 0.06 2.86 6.02 -2.39 -0.01 2.84 15 26 H 0.07 2.26 8.14 -2.38 -0.02 2.24 15 27 H 0.24 13.86 8.31 -92.70 -0.77 13.08 15 Total: -1.00 -72.68 228.93 1.21 -71.46 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: 1.15 Total: 4.35 kcal Atomic # 6 Polarization: -38.89 SS G_CDS: 3.19 Total: -35.70 kcal Atomic # 7 Polarization: -80.00 SS G_CDS: -1.68 Total: -81.68 kcal Atomic # 8 Polarization: -44.60 SS G_CDS: -2.70 Total: -47.30 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: 43.76 SS G_CDS: -0.77 Total: 42.99 kcal Total: -72.68 1.21 -71.46 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307510432.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.919 kcal (2) G-P(sol) polarization free energy of solvation -72.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds