Wall clock time and date at job start Mon Mar 30 2020 02:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42108 * 109.47145 * 2 1 4 4 N 1.65605 * 102.99873 * 109.05445 * 2 1 3 5 5 C 1.46499 * 119.99782 * 66.14631 * 4 2 1 6 6 C 1.50701 * 109.46992 * 94.99996 * 5 4 2 7 7 H 1.07998 * 120.00129 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99861 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99913 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99734 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47294 * 60.00559 * 10 8 6 12 12 H 1.48503 * 109.46954 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47431 * 300.00157 * 10 8 6 14 14 C 1.46502 * 119.99873 * 246.14659 * 4 2 1 15 15 C 1.52996 * 117.49637 * 188.61914 * 14 4 2 16 16 C 1.53000 * 60.00276 * 252.51521 * 15 14 4 17 17 H 1.09004 * 109.46960 * 300.00394 * 1 2 3 18 18 H 1.09005 * 109.46756 * 59.99706 * 1 2 3 19 19 H 1.09001 * 109.47257 * 180.02562 * 1 2 3 20 20 H 1.09002 * 109.47391 * 334.99987 * 5 4 2 21 21 H 1.09001 * 109.46813 * 215.00043 * 5 4 2 22 22 H 0.97002 * 119.99768 * 179.97438 * 9 8 6 23 23 H 1.08993 * 115.55012 * 334.33507 * 14 4 2 24 24 H 1.08998 * 117.49717 * 0.02562 * 15 14 4 25 25 H 1.09000 * 117.49726 * 145.02020 * 15 14 4 26 26 H 1.08999 * 117.49695 * 252.51611 * 16 15 14 27 27 H 1.08989 * 117.50214 * 107.49153 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2877 1.3398 0.0000 4 7 2.1865 -0.5268 1.5252 5 6 1.8513 -1.8943 1.9300 6 6 3.0463 -2.7879 1.7187 7 1 3.9637 -2.3781 1.3228 8 6 2.9686 -4.1284 2.0317 9 7 1.8515 -4.6273 2.5142 10 14 4.4500 -5.2359 1.7704 11 1 5.5875 -4.7421 2.5875 12 1 4.1102 -6.6221 2.1806 13 1 4.8298 -5.2241 0.3348 14 6 2.8512 0.3747 2.4696 15 6 3.3500 -0.2243 3.7861 16 6 2.1227 0.6893 3.7777 17 1 -0.3633 0.5139 0.8900 18 1 -0.3633 0.5139 -0.8900 19 1 -0.3634 -1.0277 0.0005 20 1 1.0162 -2.2564 1.3304 21 1 1.5728 -1.9032 2.9838 22 1 1.7967 -5.5705 2.7341 23 1 3.4460 1.1702 2.0208 24 1 3.1839 -1.2891 3.9494 25 1 4.2734 0.1770 4.2037 26 1 2.2388 1.6918 4.1898 27 1 1.1491 0.2257 3.9357 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307699064.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:02 Heat of formation + Delta-G solvation = -12.491375 kcal Electronic energy + Delta-G solvation = -11629.479937 eV Core-core repulsion = 9514.908027 eV Total energy + Delta-G solvation = -2114.571910 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 203.072 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -37.26839 -35.07350 -33.26287 -31.46673 -28.12704 -26.82581 -22.92294 -21.67369 -20.11801 -17.29049 -16.37180 -16.14133 -15.01537 -14.32907 -14.20069 -13.77730 -12.96647 -12.47479 -12.15515 -12.03086 -11.58553 -11.29214 -10.98061 -10.83169 -10.62761 -10.48843 -10.12310 -9.95841 -9.65374 -9.43784 -8.49543 -8.05847 -7.08805 -6.08711 -4.15597 2.67110 3.26568 3.29724 3.34844 3.38001 4.38131 4.49693 4.64361 5.22714 5.61740 5.62945 5.66255 5.74530 5.88118 5.99040 6.22225 6.50959 6.54835 6.82138 7.01043 7.31315 7.54411 7.79862 7.94987 8.21409 8.91995 9.51043 10.97235 Molecular weight = 203.07amu Principal moments of inertia in cm(-1) A = 0.035302 B = 0.012253 C = 0.010785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.958496 B = 2284.556566 C = 2595.457282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.544 4.544 2 S 1.501 4.499 3 O -0.911 6.911 4 N -0.842 5.842 5 C 0.257 3.743 6 C -0.528 4.528 7 H 0.064 0.936 8 C 0.062 3.938 9 N -0.896 5.896 10 Si 0.895 3.105 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.274 1.274 14 C 0.100 3.900 15 C -0.171 4.171 16 C -0.215 4.215 17 H 0.069 0.931 18 H 0.086 0.914 19 H 0.104 0.896 20 H 0.035 0.965 21 H 0.026 0.974 22 H 0.264 0.736 23 H 0.115 0.885 24 H 0.117 0.883 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.082 3.875 -3.046 4.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.699 4.699 2 S 1.602 4.398 3 O -0.897 6.897 4 N -0.671 5.671 5 C 0.134 3.866 6 C -0.567 4.567 7 H 0.082 0.918 8 C -0.141 4.141 9 N -0.535 5.535 10 Si 0.723 3.277 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.200 1.200 14 C -0.010 4.010 15 C -0.211 4.211 16 C -0.256 4.256 17 H 0.089 0.911 18 H 0.104 0.896 19 H 0.122 0.878 20 H 0.052 0.948 21 H 0.044 0.956 22 H 0.074 0.926 23 H 0.133 0.867 24 H 0.135 0.865 25 H 0.103 0.897 26 H 0.101 0.899 27 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.433 3.982 -3.666 5.430 hybrid contribution -0.381 0.534 1.581 1.712 sum 0.052 4.516 -2.085 4.975 Atomic orbital electron populations 1.28488 1.29410 1.06931 1.05035 1.69831 0.83609 0.94987 0.91421 1.92893 1.74243 1.39710 1.82823 1.54716 1.68439 1.18048 1.25893 1.19002 0.95779 0.75223 0.96547 1.21568 0.99033 0.92893 1.43223 0.91792 1.24970 0.96030 0.98028 0.95052 1.69922 1.25801 1.14061 1.43712 0.86612 0.82896 0.79415 0.78820 1.20310 1.21419 1.19962 1.21231 0.99227 0.95871 0.84669 1.23239 0.96504 1.01006 1.00342 1.23318 0.97491 0.99885 1.04864 0.91142 0.89556 0.87766 0.94751 0.95636 0.92647 0.86709 0.86458 0.89737 0.89941 0.89461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.54 -8.86 10.58 101.05 1.07 -7.79 15 2 S 1.50 26.49 14.45 -107.50 -1.55 24.94 15 3 O -0.91 -20.02 16.35 -35.23 -0.58 -20.60 15 4 N -0.84 -17.41 2.99 -108.57 -0.33 -17.73 15 5 C 0.26 5.96 4.68 -5.19 -0.02 5.94 15 6 C -0.53 -13.21 8.74 -34.44 -0.30 -13.51 15 7 H 0.06 1.60 7.81 -52.49 -0.41 1.19 15 8 C 0.06 1.59 5.46 -17.82 -0.10 1.49 15 9 N -0.90 -24.39 13.29 55.43 0.74 -23.66 15 10 Si 0.89 20.08 29.54 -169.99 -5.02 15.06 15 11 H -0.28 -6.25 7.11 56.52 0.40 -5.85 15 12 H -0.29 -6.50 7.11 56.52 0.40 -6.09 15 13 H -0.27 -6.00 7.11 56.52 0.40 -5.60 15 14 C 0.10 2.04 6.15 -67.93 -0.42 1.62 15 15 C -0.17 -3.30 9.63 -26.73 -0.26 -3.56 15 16 C -0.22 -4.01 10.12 -26.73 -0.27 -4.28 15 17 H 0.07 1.26 8.14 -51.92 -0.42 0.84 15 18 H 0.09 1.24 8.14 -51.92 -0.42 0.82 15 19 H 0.10 1.60 7.73 -51.92 -0.40 1.20 15 20 H 0.03 0.80 7.34 -51.93 -0.38 0.42 15 21 H 0.03 0.65 6.56 -51.93 -0.34 0.31 15 22 H 0.26 6.88 8.31 -40.82 -0.34 6.55 15 23 H 0.12 2.38 7.26 -51.93 -0.38 2.00 15 24 H 0.12 2.56 6.15 -51.93 -0.32 2.24 15 25 H 0.08 1.43 8.14 -51.93 -0.42 1.01 15 26 H 0.08 1.36 8.14 -51.93 -0.42 0.94 15 27 H 0.09 1.68 8.06 -51.93 -0.42 1.26 15 LS Contribution 245.09 15.07 3.69 3.69 Total: -1.00 -30.34 245.09 -6.82 -37.16 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -3.47 Total: 1.22 kcal Atomic # 6 Polarization: -19.78 SS G_CDS: -0.30 Total: -20.08 kcal Atomic # 7 Polarization: -41.80 SS G_CDS: 0.41 Total: -41.39 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -0.58 Total: -20.60 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Atomic # 16 Polarization: 26.49 SS G_CDS: -1.55 Total: 24.94 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -30.34 -6.82 -37.16 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307699064.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.670 kcal (2) G-P(sol) polarization free energy of solvation -30.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds