Wall clock time and date at job start Mon Mar 30 2020 02:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42108 * 109.47145 * 2 1 4 4 N 1.65605 * 102.99873 * 109.05445 * 2 1 3 5 5 C 1.46499 * 119.99782 * 66.14631 * 4 2 1 6 6 C 1.50701 * 109.46992 * 94.99996 * 5 4 2 7 7 H 1.07998 * 120.00129 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99861 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99913 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99734 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47294 * 60.00559 * 10 8 6 12 12 H 1.48503 * 109.46954 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47431 * 300.00157 * 10 8 6 14 14 C 1.46502 * 119.99873 * 246.14659 * 4 2 1 15 15 C 1.52996 * 117.49637 * 188.61914 * 14 4 2 16 16 C 1.53000 * 60.00276 * 252.51521 * 15 14 4 17 17 H 1.09004 * 109.46960 * 300.00394 * 1 2 3 18 18 H 1.09005 * 109.46756 * 59.99706 * 1 2 3 19 19 H 1.09001 * 109.47257 * 180.02562 * 1 2 3 20 20 H 1.09002 * 109.47391 * 334.99987 * 5 4 2 21 21 H 1.09001 * 109.46813 * 215.00043 * 5 4 2 22 22 H 0.97002 * 119.99768 * 179.97438 * 9 8 6 23 23 H 1.08993 * 115.55012 * 334.33507 * 14 4 2 24 24 H 1.08998 * 117.49717 * 0.02562 * 15 14 4 25 25 H 1.09000 * 117.49726 * 145.02020 * 15 14 4 26 26 H 1.08999 * 117.49695 * 252.51611 * 16 15 14 27 27 H 1.08989 * 117.50214 * 107.49153 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2877 1.3398 0.0000 4 7 2.1865 -0.5268 1.5252 5 6 1.8513 -1.8943 1.9300 6 6 3.0463 -2.7879 1.7187 7 1 3.9637 -2.3781 1.3228 8 6 2.9686 -4.1284 2.0317 9 7 1.8515 -4.6273 2.5142 10 14 4.4500 -5.2359 1.7704 11 1 5.5875 -4.7421 2.5875 12 1 4.1102 -6.6221 2.1806 13 1 4.8298 -5.2241 0.3348 14 6 2.8512 0.3747 2.4696 15 6 3.3500 -0.2243 3.7861 16 6 2.1227 0.6893 3.7777 17 1 -0.3633 0.5139 0.8900 18 1 -0.3633 0.5139 -0.8900 19 1 -0.3634 -1.0277 0.0005 20 1 1.0162 -2.2564 1.3304 21 1 1.5728 -1.9032 2.9838 22 1 1.7967 -5.5705 2.7341 23 1 3.4460 1.1702 2.0208 24 1 3.1839 -1.2891 3.9494 25 1 4.2734 0.1770 4.2037 26 1 2.2388 1.6918 4.1898 27 1 1.1491 0.2257 3.9357 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307699064.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:02 Heat of formation + Delta-G solvation = -32.626114 kcal Electronic energy + Delta-G solvation = -11630.353045 eV Core-core repulsion = 9514.908027 eV Total energy + Delta-G solvation = -2115.445018 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 203.072 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.87314 -36.71079 -35.12794 -33.23674 -29.49876 -28.69889 -24.78945 -23.19985 -21.74015 -18.92678 -18.31018 -17.70773 -16.75586 -15.96839 -15.87005 -15.26540 -14.43963 -14.33012 -13.72283 -13.48513 -13.28575 -12.99450 -12.69068 -12.52401 -12.30853 -12.17728 -11.93414 -11.60387 -11.32851 -11.16444 -10.47179 -9.66090 -8.68192 -8.04086 -6.18586 1.17635 1.53101 1.53984 1.61229 1.80063 2.51876 2.97914 3.09670 3.24404 4.04921 4.09464 4.12577 4.30213 4.43910 4.57845 4.74231 4.99735 5.16947 5.21050 5.33448 5.43606 5.72425 5.89197 6.17522 6.27751 6.94433 7.51675 8.99268 Molecular weight = 203.07amu Principal moments of inertia in cm(-1) A = 0.035302 B = 0.012253 C = 0.010785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.958496 B = 2284.556566 C = 2595.457282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.537 4.537 2 S 1.540 4.460 3 O -0.948 6.948 4 N -0.855 5.855 5 C 0.273 3.727 6 C -0.530 4.530 7 H 0.063 0.937 8 C 0.016 3.984 9 N -0.929 5.929 10 Si 0.953 3.047 11 H -0.278 1.278 12 H -0.290 1.290 13 H -0.262 1.262 14 C 0.080 3.920 15 C -0.168 4.168 16 C -0.202 4.202 17 H 0.054 0.946 18 H 0.110 0.890 19 H 0.116 0.884 20 H 0.034 0.966 21 H 0.000 1.000 22 H 0.264 0.736 23 H 0.113 0.887 24 H 0.088 0.912 25 H 0.110 0.890 26 H 0.108 0.892 27 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.289 4.076 -3.584 5.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.694 4.694 2 S 1.643 4.357 3 O -0.935 6.935 4 N -0.682 5.682 5 C 0.149 3.851 6 C -0.569 4.569 7 H 0.081 0.919 8 C -0.183 4.183 9 N -0.569 5.569 10 Si 0.779 3.221 11 H -0.204 1.204 12 H -0.216 1.216 13 H -0.187 1.187 14 C -0.030 4.030 15 C -0.207 4.207 16 C -0.242 4.242 17 H 0.074 0.926 18 H 0.129 0.871 19 H 0.134 0.866 20 H 0.052 0.948 21 H 0.018 0.982 22 H 0.073 0.927 23 H 0.131 0.869 24 H 0.107 0.893 25 H 0.128 0.872 26 H 0.126 0.874 27 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.829 4.197 -4.204 5.998 hybrid contribution -0.571 0.509 1.735 1.897 sum 0.259 4.706 -2.469 5.321 Atomic orbital electron populations 1.28380 1.27543 1.07942 1.05506 1.69340 0.83855 0.92980 0.89571 1.92816 1.75821 1.41720 1.83104 1.54676 1.69261 1.17358 1.26912 1.18647 0.95155 0.76370 0.94970 1.21800 0.99442 0.93251 1.42447 0.91893 1.25667 0.98291 0.99416 0.94925 1.70026 1.27592 1.14303 1.44962 0.85684 0.79755 0.77446 0.79222 1.20370 1.21570 1.18660 1.21346 1.00303 0.96149 0.85194 1.23161 0.98027 0.99587 0.99945 1.23335 0.96636 1.00859 1.03361 0.92641 0.87119 0.86551 0.94787 0.98211 0.92726 0.86938 0.89323 0.87218 0.87391 0.90544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.54 -16.42 10.58 113.37 1.20 -15.22 15 2 S 1.54 52.49 14.45 -56.49 -0.82 51.67 15 3 O -0.95 -40.61 16.35 -148.98 -2.44 -43.05 15 4 N -0.85 -34.85 2.99 -497.41 -1.49 -36.34 15 5 C 0.27 12.63 4.68 85.63 0.40 13.03 15 6 C -0.53 -26.34 8.74 25.60 0.22 -26.12 15 7 H 0.06 3.09 7.81 -2.91 -0.02 3.07 15 8 C 0.02 0.83 5.46 84.66 0.46 1.29 15 9 N -0.93 -50.62 13.29 21.45 0.28 -50.33 15 10 Si 0.95 40.62 29.54 68.60 2.03 42.64 15 11 H -0.28 -11.81 7.11 99.48 0.71 -11.10 15 12 H -0.29 -12.35 7.11 99.48 0.71 -11.64 15 13 H -0.26 -10.59 7.11 99.48 0.71 -9.88 15 14 C 0.08 3.20 6.15 44.99 0.28 3.48 15 15 C -0.17 -6.33 9.63 30.59 0.29 -6.04 15 16 C -0.20 -7.28 10.12 30.60 0.31 -6.97 15 17 H 0.05 1.89 8.14 -2.39 -0.02 1.87 15 18 H 0.11 2.87 8.14 -2.39 -0.02 2.85 15 19 H 0.12 3.32 7.73 -2.39 -0.02 3.30 15 20 H 0.03 1.57 7.34 -2.39 -0.02 1.56 15 21 H 0.00 -0.01 6.56 -2.39 -0.02 -0.02 15 22 H 0.26 13.78 8.31 -92.71 -0.77 13.00 15 23 H 0.11 4.56 7.26 -2.39 -0.02 4.54 15 24 H 0.09 3.90 6.15 -2.39 -0.01 3.88 15 25 H 0.11 3.52 8.14 -2.39 -0.02 3.50 15 26 H 0.11 3.32 8.14 -2.39 -0.02 3.30 15 27 H 0.08 2.91 8.06 -2.39 -0.02 2.89 15 Total: -1.00 -62.70 245.09 1.88 -60.82 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: 1.15 Total: 11.14 kcal Atomic # 6 Polarization: -39.71 SS G_CDS: 3.17 Total: -36.54 kcal Atomic # 7 Polarization: -85.47 SS G_CDS: -1.20 Total: -86.68 kcal Atomic # 8 Polarization: -40.61 SS G_CDS: -2.44 Total: -43.05 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.64 kcal Atomic # 16 Polarization: 52.49 SS G_CDS: -0.82 Total: 51.67 kcal Total: -62.70 1.88 -60.82 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307699064.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.191 kcal (2) G-P(sol) polarization free energy of solvation -62.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds