Wall clock time and date at job start Mon Mar 30 2020 02:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42105 * 109.46988 * 2 1 4 4 N 1.65601 * 102.99984 * 250.94738 * 2 1 3 5 5 C 1.46504 * 119.99930 * 293.84912 * 4 2 1 6 6 C 1.50703 * 109.46705 * 95.00082 * 5 4 2 7 7 H 1.07997 * 120.00355 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99728 * 179.97438 * 6 5 4 9 9 N 1.31517 * 120.00101 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99953 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.47185 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.46767 * 120.00207 * 10 8 6 13 13 H 1.48503 * 109.47230 * 240.00016 * 10 8 6 14 14 C 1.46497 * 120.00152 * 113.85467 * 4 2 1 15 15 C 1.53003 * 117.49886 * 188.74519 * 14 4 2 16 16 C 1.52997 * 117.50185 * 120.08873 * 14 4 2 17 17 H 1.08999 * 109.47052 * 59.99922 * 1 2 3 18 18 H 1.08992 * 109.47071 * 179.97438 * 1 2 3 19 19 H 1.08996 * 109.46917 * 299.99923 * 1 2 3 20 20 H 1.08993 * 109.47413 * 214.99943 * 5 4 2 21 21 H 1.08996 * 109.46907 * 335.00521 * 5 4 2 22 22 H 0.96996 * 119.99879 * 179.97438 * 9 8 6 23 23 H 1.09003 * 115.54974 * 334.40915 * 14 4 2 24 24 H 1.09007 * 117.49879 * 0.02562 * 15 14 4 25 25 H 1.08999 * 117.49700 * 145.01673 * 15 14 4 26 26 H 1.09002 * 117.50074 * 214.98138 * 16 14 4 27 27 H 1.09002 * 117.49451 * 359.96737 * 16 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2877 1.3398 0.0000 4 7 2.1866 -0.5267 -1.5252 5 6 1.8515 -1.8942 -1.9301 6 6 0.5237 -1.8959 -2.6429 7 1 -0.0167 -0.9710 -2.7802 8 6 -0.0012 -3.0783 -3.1198 9 7 0.6566 -4.2047 -2.9522 10 14 -1.6473 -3.0805 -4.0028 11 1 -2.1801 -1.6956 -4.0602 12 1 -1.4680 -3.5991 -5.3828 13 1 -2.6021 -3.9487 -3.2679 14 6 2.8513 0.3747 -2.4695 15 6 2.9849 -0.0948 -3.9195 16 6 4.2167 -0.0522 -3.0119 17 1 -0.3633 0.5138 -0.8900 18 1 -0.3633 -1.0276 -0.0005 19 1 -0.3633 0.5138 0.8900 20 1 2.6234 -2.2746 -2.5989 21 1 1.7904 -2.5300 -1.0468 22 1 0.2872 -5.0366 -3.2874 23 1 2.6880 1.4387 -2.2981 24 1 2.5779 -1.0743 -4.1710 25 1 2.9100 0.6604 -4.7020 26 1 4.9518 0.7310 -3.1975 27 1 4.6207 -1.0035 -2.6656 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307699065.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:04 Heat of formation + Delta-G solvation = -33.604984 kcal Electronic energy + Delta-G solvation = -11708.592623 eV Core-core repulsion = 9593.105158 eV Total energy + Delta-G solvation = -2115.487465 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 203.072 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.82901 -36.69695 -35.17412 -33.22162 -29.44822 -28.62763 -24.83223 -23.13744 -21.71233 -18.94294 -18.35555 -17.65337 -16.75335 -16.01247 -15.80976 -15.24195 -14.41384 -14.37944 -13.77234 -13.33537 -13.26051 -13.04108 -12.74530 -12.55910 -12.30912 -12.15301 -11.99460 -11.57710 -11.32137 -11.08616 -10.52419 -9.71551 -8.69562 -8.08931 -6.22794 1.28466 1.37253 1.42164 1.50461 1.78411 2.42633 3.03460 3.11957 3.17295 4.08436 4.12294 4.20173 4.35556 4.50027 4.66693 4.83192 5.03528 5.26802 5.35046 5.37477 5.45305 5.71197 5.88415 6.19217 6.24349 6.88681 7.46170 8.92512 Molecular weight = 203.07amu Principal moments of inertia in cm(-1) A = 0.034118 B = 0.013415 C = 0.011064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.478958 B = 2086.790288 C = 2530.161081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.525 4.525 2 S 1.546 4.454 3 O -0.950 6.950 4 N -0.853 5.853 5 C 0.269 3.731 6 C -0.530 4.530 7 H 0.041 0.959 8 C 0.023 3.977 9 N -0.918 5.918 10 Si 0.941 3.059 11 H -0.282 1.282 12 H -0.283 1.283 13 H -0.275 1.275 14 C 0.076 3.924 15 C -0.186 4.186 16 C -0.177 4.177 17 H 0.046 0.954 18 H 0.114 0.886 19 H 0.104 0.896 20 H 0.016 0.984 21 H 0.047 0.953 22 H 0.265 0.735 23 H 0.100 0.900 24 H 0.088 0.912 25 H 0.099 0.901 26 H 0.110 0.890 27 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.883 2.859 4.525 6.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.681 4.681 2 S 1.648 4.352 3 O -0.937 6.937 4 N -0.680 5.680 5 C 0.145 3.855 6 C -0.570 4.570 7 H 0.060 0.940 8 C -0.177 4.177 9 N -0.558 5.558 10 Si 0.768 3.232 11 H -0.207 1.207 12 H -0.209 1.209 13 H -0.201 1.201 14 C -0.034 4.034 15 C -0.226 4.226 16 C -0.217 4.217 17 H 0.065 0.935 18 H 0.133 0.867 19 H 0.123 0.877 20 H 0.034 0.966 21 H 0.065 0.935 22 H 0.074 0.926 23 H 0.118 0.882 24 H 0.106 0.894 25 H 0.117 0.883 26 H 0.128 0.872 27 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.491 2.949 5.161 6.894 hybrid contribution -2.170 1.142 -2.300 3.362 sum 1.321 4.091 2.862 5.164 Atomic orbital electron populations 1.28292 1.27356 1.07945 1.04531 1.68591 0.83631 0.93591 0.89410 1.92826 1.75642 1.41900 1.83297 1.54738 1.68637 1.18033 1.26618 1.18719 0.93674 0.77222 0.95886 1.21803 1.05748 0.92756 1.36689 0.94044 1.25485 0.99964 0.95408 0.96808 1.69983 1.39579 0.98797 1.47415 0.85777 0.81213 0.77523 0.78678 1.20681 1.20876 1.20094 1.21233 0.97388 0.93432 0.91377 1.23216 1.02667 1.03307 0.93375 1.23328 0.91232 1.03412 1.03685 0.93497 0.86681 0.87735 0.96566 0.93515 0.92550 0.88213 0.89378 0.88257 0.87179 0.88917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.52 -18.05 10.24 113.37 1.16 -16.89 15 2 S 1.55 52.07 14.43 -56.49 -0.82 51.26 15 3 O -0.95 -40.69 16.35 -148.98 -2.44 -43.12 15 4 N -0.85 -34.36 2.99 -497.42 -1.49 -35.85 15 5 C 0.27 12.19 4.65 85.63 0.40 12.59 15 6 C -0.53 -27.02 8.18 25.60 0.21 -26.81 15 7 H 0.04 2.22 7.81 -2.91 -0.02 2.20 15 8 C 0.02 1.21 5.46 84.65 0.46 1.67 15 9 N -0.92 -49.48 13.29 21.45 0.28 -49.20 15 10 Si 0.94 42.30 29.54 68.60 2.03 44.32 15 11 H -0.28 -12.85 7.11 99.48 0.71 -12.14 15 12 H -0.28 -12.60 7.11 99.48 0.71 -11.89 15 13 H -0.28 -11.99 7.11 99.48 0.71 -11.28 15 14 C 0.08 3.02 6.15 44.99 0.28 3.30 15 15 C -0.19 -7.07 9.63 30.62 0.29 -6.78 15 16 C -0.18 -5.98 10.12 30.61 0.31 -5.67 15 17 H 0.05 1.88 8.14 -2.39 -0.02 1.86 15 18 H 0.11 3.93 8.14 -2.39 -0.02 3.91 15 19 H 0.10 3.02 8.14 -2.39 -0.02 3.00 15 20 H 0.02 0.80 6.56 -2.39 -0.02 0.78 15 21 H 0.05 2.04 7.99 -2.39 -0.02 2.02 15 22 H 0.27 13.63 8.31 -92.71 -0.77 12.86 15 23 H 0.10 4.19 7.26 -2.39 -0.02 4.17 15 24 H 0.09 3.88 6.15 -2.38 -0.01 3.87 15 25 H 0.10 3.33 8.14 -2.39 -0.02 3.31 15 26 H 0.11 3.13 8.14 -2.39 -0.02 3.11 15 27 H 0.09 3.14 8.05 -2.39 -0.02 3.12 15 Total: -1.00 -64.09 245.20 1.83 -62.27 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: 1.14 Total: 8.90 kcal Atomic # 6 Polarization: -41.70 SS G_CDS: 3.11 Total: -38.58 kcal Atomic # 7 Polarization: -83.84 SS G_CDS: -1.20 Total: -85.05 kcal Atomic # 8 Polarization: -40.69 SS G_CDS: -2.44 Total: -43.12 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.32 kcal Atomic # 16 Polarization: 52.07 SS G_CDS: -0.82 Total: 51.26 kcal Total: -64.09 1.83 -62.27 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307699065.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.663 kcal (2) G-P(sol) polarization free energy of solvation -64.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds