Wall clock time and date at job start Mon Mar 30 2020 02:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00222 * 2 1 4 4 H 1.48498 * 109.47028 * 240.00373 * 3 2 1 5 5 H 1.48503 * 109.46851 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47412 * 119.99982 * 3 2 1 7 7 C 1.38817 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99438 * 180.27052 * 7 2 1 9 9 N 1.36935 * 119.99990 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99938 * 179.97438 * 9 7 2 11 11 H 1.09011 * 110.67154 * 328.23598 * 10 9 7 12 12 C 1.54892 * 110.75530 * 91.66909 * 10 9 7 13 13 C 1.54270 * 104.19253 * 156.26071 * 12 10 9 14 14 H 1.09003 * 117.76195 * 116.75523 * 13 12 10 15 15 C 1.53872 * 106.60045 * 336.38830 * 13 12 10 16 16 H 1.08999 * 121.33017 * 138.06601 * 15 13 12 17 17 C 1.54272 * 106.59783 * 0.02562 * 15 13 12 18 18 C 1.53002 * 60.87629 * 246.52867 * 15 13 12 19 19 F 1.39907 * 117.46146 * 108.13124 * 18 15 13 20 20 F 1.39899 * 117.46151 * 252.95263 * 18 15 13 21 21 H 0.96996 * 119.99743 * 0.02562 * 1 2 3 22 22 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 23 23 H 1.09004 * 110.48684 * 274.93541 * 12 10 9 24 24 H 1.08995 * 110.48816 * 37.58180 * 12 10 9 25 25 H 1.08997 * 110.48915 * 264.93191 * 17 15 13 26 26 H 1.09005 * 110.48277 * 142.28468 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0050 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 3.0014 -3.5565 -0.5364 12 6 2.2959 -4.1533 1.4483 13 6 2.4851 -5.6771 1.2994 14 1 3.4504 -6.0986 1.5797 15 6 1.7856 -6.0810 -0.0103 16 1 2.2398 -6.7931 -0.6991 17 6 1.1962 -4.7884 -0.6118 18 6 1.2213 -6.5822 1.3206 19 9 0.0180 -6.0222 1.7631 20 9 1.4083 -7.9331 1.6328 21 1 -0.4849 0.8400 -0.0004 22 1 0.3555 -2.3881 0.0005 23 1 3.1933 -3.6964 1.8657 24 1 1.4299 -3.9357 2.0734 25 1 0.1525 -4.6729 -0.3196 26 1 1.2908 -4.7954 -1.6978 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575481251.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:49 Heat of formation + Delta-G solvation = -77.830603 kcal Electronic energy + Delta-G solvation = -13106.556022 eV Core-core repulsion = 10435.310403 eV Total energy + Delta-G solvation = -2671.245619 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.082 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -49.62841 -48.33836 -39.94612 -36.03333 -33.19256 -29.88119 -29.33218 -25.72321 -22.90178 -21.38888 -21.07860 -19.25634 -18.73600 -17.67803 -16.84971 -16.72093 -16.01950 -15.36080 -15.07188 -14.94847 -14.56984 -14.00044 -13.76071 -13.64602 -12.96146 -12.72173 -12.46501 -12.34018 -12.26920 -11.95424 -11.72657 -11.17237 -10.90096 -10.67089 -9.03113 -7.93763 -5.23397 1.49575 1.52281 1.58316 1.97551 2.08175 2.57551 3.23804 3.27296 3.43035 3.65165 4.05704 4.13618 4.22932 4.42029 4.51288 4.64265 4.74528 4.89560 5.03817 5.11856 5.28745 5.46819 5.55591 6.27687 7.33782 8.08709 8.31276 9.29687 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.075396 B = 0.007739 C = 0.007547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 371.285695 B = 3617.184218 C = 3709.260561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.076 4.076 3 Si 0.974 3.026 4 H -0.275 1.275 5 H -0.299 1.299 6 H -0.277 1.277 7 C -0.244 4.244 8 H 0.082 0.918 9 N -0.732 5.732 10 C 0.171 3.829 11 H 0.073 0.927 12 C -0.118 4.118 13 C -0.136 4.136 14 H 0.164 0.836 15 C -0.135 4.135 16 H 0.166 0.834 17 C -0.104 4.104 18 C 0.180 3.820 19 F -0.178 7.178 20 F -0.163 7.163 21 H 0.251 0.749 22 H 0.372 0.628 23 H 0.078 0.922 24 H 0.048 0.952 25 H 0.057 0.943 26 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.116 -12.763 0.377 14.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.268 4.268 3 Si 0.803 3.197 4 H -0.201 1.201 5 H -0.226 1.226 6 H -0.204 1.204 7 C -0.375 4.375 8 H 0.100 0.900 9 N -0.370 5.370 10 C 0.062 3.938 11 H 0.091 0.909 12 C -0.158 4.158 13 C -0.155 4.155 14 H 0.181 0.819 15 C -0.155 4.155 16 H 0.184 0.816 17 C -0.142 4.142 18 C 0.143 3.857 19 F -0.159 7.159 20 F -0.144 7.144 21 H 0.059 0.941 22 H 0.204 0.796 23 H 0.097 0.903 24 H 0.067 0.933 25 H 0.076 0.924 26 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 6.228 -12.634 0.376 14.090 hybrid contribution -0.595 0.853 0.371 1.104 sum 5.633 -11.780 0.747 13.079 Atomic orbital electron populations 1.69823 1.06790 1.26157 1.59452 1.25589 0.96298 1.01232 1.03664 0.85206 0.77147 0.79084 0.78285 1.20126 1.22566 1.20356 1.19664 0.91666 0.85035 1.41153 0.90005 1.42577 1.05437 1.00976 1.88033 1.21577 0.94895 0.84573 0.92803 0.90915 1.22677 1.01834 0.90877 1.00411 1.25009 0.95574 0.94716 1.00216 0.81887 1.24562 1.00290 0.99543 0.91062 0.81614 1.22213 0.99327 0.91312 1.01372 1.20996 0.83817 0.77020 1.03831 1.92963 1.47661 1.84361 1.90891 1.92978 1.94952 1.32338 1.94105 0.94065 0.79627 0.90308 0.93284 0.92393 0.88832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.46 13.06 21.65 0.28 -59.17 15 2 C -0.08 -4.29 5.50 84.86 0.47 -3.82 15 3 Si 0.97 45.39 29.55 68.60 2.03 47.42 15 4 H -0.28 -12.24 7.11 99.48 0.71 -11.54 15 5 H -0.30 -14.22 7.11 99.48 0.71 -13.52 15 6 H -0.28 -12.43 7.11 99.48 0.71 -11.72 15 7 C -0.24 -13.16 9.96 84.04 0.84 -12.32 15 8 H 0.08 4.16 7.83 -2.91 -0.02 4.13 15 9 N -0.73 -36.16 5.23 -316.87 -1.66 -37.81 15 10 C 0.17 6.32 3.56 46.27 0.16 6.49 15 11 H 0.07 2.58 8.09 -2.38 -0.02 2.56 15 12 C -0.12 -3.92 6.23 31.67 0.20 -3.72 15 13 C -0.14 -3.43 7.02 -9.22 -0.06 -3.49 15 14 H 0.16 3.03 8.14 -2.39 -0.02 3.01 15 15 C -0.14 -3.29 6.84 -10.07 -0.07 -3.36 15 16 H 0.17 2.85 8.14 -2.39 -0.02 2.83 15 17 C -0.10 -3.20 6.15 31.66 0.19 -3.01 15 18 C 0.18 5.08 5.22 31.44 0.16 5.25 15 19 F -0.18 -6.18 16.34 44.97 0.73 -5.44 15 20 F -0.16 -4.42 17.60 44.97 0.79 -3.63 15 21 H 0.25 14.94 8.31 -92.71 -0.77 14.17 15 22 H 0.37 20.15 7.76 -92.71 -0.72 19.43 15 23 H 0.08 2.51 8.14 -2.38 -0.02 2.49 15 24 H 0.05 1.91 7.76 -2.39 -0.02 1.89 15 25 H 0.06 2.03 7.49 -2.39 -0.02 2.02 15 26 H 0.09 2.59 8.14 -2.38 -0.02 2.57 15 Total: -1.00 -62.85 233.39 4.55 -58.30 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: 0.47 Total: 18.32 kcal Atomic # 6 Polarization: -19.88 SS G_CDS: 1.89 Total: -17.99 kcal Atomic # 7 Polarization: -95.61 SS G_CDS: -1.37 Total: -96.99 kcal Atomic # 9 Polarization: -10.60 SS G_CDS: 1.53 Total: -9.07 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -62.85 4.55 -58.30 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575481251.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.527 kcal (2) G-P(sol) polarization free energy of solvation -62.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds