Wall clock time and date at job start Mon Mar 30 2020 02:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31594 * 1 3 3 Si 1.86803 * 120.00080 * 2 1 4 4 H 1.48494 * 109.47228 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.46907 * 300.00139 * 3 2 1 6 6 H 1.48500 * 109.47000 * 60.00031 * 3 2 1 7 7 C 1.38795 * 119.99972 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99869 * 179.97438 * 7 2 1 9 9 N 1.36848 * 120.00080 * 0.02562 * 7 2 1 10 10 C 1.39305 * 119.99954 * 179.97438 * 9 7 2 11 11 C 1.39098 * 120.08766 * 359.71855 * 10 9 7 12 12 C 1.38033 * 119.90875 * 179.77061 * 11 10 9 13 13 C 1.38357 * 120.08439 * 0.53048 * 12 11 10 14 14 C 1.38299 * 120.18388 * 359.70108 * 13 12 11 15 15 C 1.50700 * 119.95766 * 180.02562 * 14 13 12 16 16 C 1.53001 * 117.49793 * 8.64345 * 15 14 13 17 17 C 1.52997 * 59.99980 * 252.51119 * 16 15 14 18 18 C 1.38071 * 120.09025 * 0.04552 * 14 13 12 19 19 H 0.96990 * 119.99746 * 359.97438 * 1 2 3 20 20 H 0.96999 * 120.00056 * 359.97438 * 9 7 2 21 21 H 1.08003 * 120.04632 * 0.02562 * 11 10 9 22 22 H 1.07993 * 119.95748 * 180.25697 * 12 11 10 23 23 H 1.08001 * 119.90483 * 179.72199 * 13 12 11 24 24 H 1.08995 * 115.55234 * 154.35369 * 15 14 13 25 25 H 1.08996 * 117.49667 * 0.02562 * 16 15 14 26 26 H 1.09003 * 117.49776 * 145.01888 * 16 15 14 27 27 H 1.09006 * 117.50019 * 252.51014 * 17 16 15 28 28 H 1.09007 * 117.51949 * 107.48449 * 17 16 15 29 29 H 1.07996 * 120.04809 * 179.97438 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.7099 1.3464 0.0006 5 1 1.8912 2.3964 -1.2124 6 1 1.8912 2.3964 1.2125 7 6 2.0099 -1.2020 0.0005 8 1 3.0899 -1.2020 0.0001 9 7 1.3257 -2.3871 0.0005 10 6 2.0222 -3.5936 0.0005 11 6 3.4132 -3.5957 -0.0054 12 6 4.0997 -4.7932 -0.0006 13 6 3.4060 -5.9903 -0.0010 14 6 2.0230 -5.9925 0.0001 15 6 1.2725 -7.2994 0.0002 16 6 2.0845 -8.5802 0.2032 17 6 1.5087 -8.2497 -1.1753 18 6 1.3288 -4.7990 0.0005 19 1 -0.4849 0.8400 0.0004 20 1 0.3557 -2.3872 0.0005 21 1 3.9554 -2.6616 -0.0096 22 1 5.1796 -4.7957 -0.0010 23 1 3.9460 -6.9256 -0.0017 24 1 0.2700 -7.2657 0.4266 25 1 3.1613 -8.4775 0.3370 26 1 1.6161 -9.3895 0.7634 27 1 0.6616 -8.8417 -1.5221 28 1 2.2067 -7.9296 -1.9490 29 1 0.2489 -4.8015 0.0009 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575482891.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:53 Heat of formation + Delta-G solvation = 44.816020 kcal Electronic energy + Delta-G solvation = -12198.352807 eV Core-core repulsion = 10086.655075 eV Total energy + Delta-G solvation = -2111.697732 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.80411 -36.72486 -34.50254 -31.75009 -29.86327 -27.78573 -24.73439 -22.76433 -22.22110 -21.31731 -19.26481 -17.55758 -16.54725 -15.34948 -14.82440 -14.63808 -13.92128 -13.74272 -12.83875 -12.57334 -12.39568 -11.69320 -11.62913 -11.35804 -11.26261 -10.71910 -10.68457 -10.36063 -10.31188 -10.00733 -9.79717 -9.70504 -8.67489 -7.72509 -6.66559 -6.52187 -3.70935 2.39445 2.62804 3.17412 3.18595 3.22543 4.07788 4.16397 4.76250 4.97467 5.20578 5.22404 5.38320 5.42195 5.65321 5.80506 5.93873 6.03821 6.15728 6.31438 6.35695 6.52959 6.63654 6.98616 7.07700 7.28867 7.52826 7.57624 7.68689 7.78990 8.15211 8.80318 9.41145 9.60401 10.65196 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.069117 B = 0.007133 C = 0.006585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 405.012149 B = 3924.568007 C = 4250.852075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.017 3.983 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.298 4.298 8 H 0.101 0.899 9 N -0.566 5.566 10 C 0.214 3.786 11 C -0.227 4.227 12 C -0.062 4.062 13 C -0.247 4.247 14 C 0.000 4.000 15 C -0.106 4.106 16 C -0.181 4.181 17 C -0.174 4.174 18 C -0.234 4.234 19 H 0.273 0.727 20 H 0.398 0.602 21 H 0.113 0.887 22 H 0.100 0.900 23 H 0.098 0.902 24 H 0.104 0.896 25 H 0.098 0.902 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.094 0.906 29 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.088 -9.409 -0.358 9.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.186 4.186 3 Si 0.757 3.243 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.428 4.428 8 H 0.119 0.881 9 N -0.169 5.169 10 C 0.093 3.907 11 C -0.251 4.251 12 C -0.081 4.081 13 C -0.269 4.269 14 C -0.001 4.001 15 C -0.124 4.124 16 C -0.218 4.218 17 C -0.211 4.211 18 C -0.258 4.258 19 H 0.083 0.917 20 H 0.233 0.767 21 H 0.131 0.869 22 H 0.118 0.882 23 H 0.116 0.884 24 H 0.122 0.878 25 H 0.117 0.883 26 H 0.107 0.893 27 H 0.108 0.892 28 H 0.113 0.887 29 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.958 -8.900 -0.359 9.386 hybrid contribution -0.122 0.920 0.011 0.929 sum 2.836 -7.979 -0.349 8.476 Atomic orbital electron populations 1.69693 1.05938 1.28203 1.49610 1.25268 0.95729 0.99782 0.97776 0.85780 0.79398 0.81168 0.77911 1.19259 1.20647 1.20649 1.19764 0.93025 0.82810 1.47239 0.88092 1.40986 1.07958 1.01921 1.66048 1.17822 0.91679 0.85992 0.95184 1.20439 0.92632 0.97555 1.14488 1.20576 0.97819 0.92392 0.97335 1.20172 0.93148 0.96674 1.16882 1.18489 0.92858 0.91362 0.97441 1.21021 0.99384 0.89232 1.02753 1.23006 1.00410 0.98648 0.99723 1.22951 1.03232 1.03051 0.91890 1.19983 0.98004 0.90804 1.17041 0.91744 0.76713 0.86915 0.88165 0.88375 0.87831 0.88347 0.89265 0.89215 0.88704 0.87998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.54 13.05 55.49 0.72 -23.82 15 2 C 0.02 0.44 5.50 -17.45 -0.10 0.34 15 3 Si 0.93 20.31 29.55 -169.99 -5.02 15.29 15 4 H -0.27 -5.69 7.11 56.52 0.40 -5.29 15 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 15 6 H -0.28 -6.10 7.11 56.52 0.40 -5.70 15 7 C -0.30 -7.89 9.56 -15.11 -0.14 -8.04 15 8 H 0.10 2.58 5.68 -52.49 -0.30 2.28 15 9 N -0.57 -14.47 5.43 -9.60 -0.05 -14.53 15 10 C 0.21 5.03 6.62 -83.84 -0.55 4.47 15 11 C -0.23 -5.05 9.30 -39.34 -0.37 -5.42 15 12 C -0.06 -1.21 10.04 -39.61 -0.40 -1.61 15 13 C -0.25 -4.63 9.30 -39.52 -0.37 -4.99 15 14 C 0.00 -0.01 5.61 -104.66 -0.59 -0.59 15 15 C -0.11 -1.64 6.04 -91.77 -0.55 -2.20 15 16 C -0.18 -2.35 9.86 -26.73 -0.26 -2.61 15 17 C -0.17 -2.32 10.16 -26.73 -0.27 -2.59 15 18 C -0.23 -4.99 9.59 -39.34 -0.38 -5.36 15 19 H 0.27 7.03 8.31 -40.82 -0.34 6.69 15 20 H 0.40 10.32 7.90 -40.82 -0.32 9.99 15 21 H 0.11 2.52 5.96 -52.48 -0.31 2.21 15 22 H 0.10 1.68 8.06 -52.49 -0.42 1.26 15 23 H 0.10 1.62 6.01 -52.49 -0.32 1.30 15 24 H 0.10 1.52 8.14 -51.93 -0.42 1.10 15 25 H 0.10 1.28 6.17 -51.93 -0.32 0.96 15 26 H 0.09 0.99 8.14 -51.93 -0.42 0.57 15 27 H 0.09 1.02 8.14 -51.93 -0.42 0.60 15 28 H 0.09 1.31 8.14 -51.93 -0.42 0.89 15 29 H 0.10 2.06 8.06 -52.49 -0.42 1.64 15 LS Contribution 249.65 15.07 3.76 3.76 Total: -1.00 -27.28 249.65 -7.81 -35.09 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -3.24 Total: 12.80 kcal Atomic # 6 Polarization: -24.62 SS G_CDS: -3.98 Total: -28.60 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: 0.67 Total: -38.34 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -27.28 -7.81 -35.09 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575482891.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.909 kcal (2) G-P(sol) polarization free energy of solvation -27.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds