Wall clock time and date at job start Mon Mar 30 2020 02:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31594 * 1 3 3 Si 1.86803 * 120.00080 * 2 1 4 4 H 1.48494 * 109.47228 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.46907 * 300.00139 * 3 2 1 6 6 H 1.48500 * 109.47000 * 60.00031 * 3 2 1 7 7 C 1.38795 * 119.99972 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99869 * 179.97438 * 7 2 1 9 9 N 1.36848 * 120.00080 * 0.02562 * 7 2 1 10 10 C 1.39305 * 119.99954 * 179.97438 * 9 7 2 11 11 C 1.39098 * 120.08766 * 359.71855 * 10 9 7 12 12 C 1.38033 * 119.90875 * 179.77061 * 11 10 9 13 13 C 1.38357 * 120.08439 * 0.53048 * 12 11 10 14 14 C 1.38299 * 120.18388 * 359.70108 * 13 12 11 15 15 C 1.50700 * 119.95766 * 180.02562 * 14 13 12 16 16 C 1.53001 * 117.49793 * 8.64345 * 15 14 13 17 17 C 1.52997 * 59.99980 * 252.51119 * 16 15 14 18 18 C 1.38071 * 120.09025 * 0.04552 * 14 13 12 19 19 H 0.96990 * 119.99746 * 359.97438 * 1 2 3 20 20 H 0.96999 * 120.00056 * 359.97438 * 9 7 2 21 21 H 1.08003 * 120.04632 * 0.02562 * 11 10 9 22 22 H 1.07993 * 119.95748 * 180.25697 * 12 11 10 23 23 H 1.08001 * 119.90483 * 179.72199 * 13 12 11 24 24 H 1.08995 * 115.55234 * 154.35369 * 15 14 13 25 25 H 1.08996 * 117.49667 * 0.02562 * 16 15 14 26 26 H 1.09003 * 117.49776 * 145.01888 * 16 15 14 27 27 H 1.09006 * 117.50019 * 252.51014 * 17 16 15 28 28 H 1.09007 * 117.51949 * 107.48449 * 17 16 15 29 29 H 1.07996 * 120.04809 * 179.97438 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.7099 1.3464 0.0006 5 1 1.8912 2.3964 -1.2124 6 1 1.8912 2.3964 1.2125 7 6 2.0099 -1.2020 0.0005 8 1 3.0899 -1.2020 0.0001 9 7 1.3257 -2.3871 0.0005 10 6 2.0222 -3.5936 0.0005 11 6 3.4132 -3.5957 -0.0054 12 6 4.0997 -4.7932 -0.0006 13 6 3.4060 -5.9903 -0.0010 14 6 2.0230 -5.9925 0.0001 15 6 1.2725 -7.2994 0.0002 16 6 2.0845 -8.5802 0.2032 17 6 1.5087 -8.2497 -1.1753 18 6 1.3288 -4.7990 0.0005 19 1 -0.4849 0.8400 0.0004 20 1 0.3557 -2.3872 0.0005 21 1 3.9554 -2.6616 -0.0096 22 1 5.1796 -4.7957 -0.0010 23 1 3.9460 -6.9256 -0.0017 24 1 0.2700 -7.2657 0.4266 25 1 3.1613 -8.4775 0.3370 26 1 1.6161 -9.3895 0.7634 27 1 0.6616 -8.8417 -1.5221 28 1 2.2067 -7.9296 -1.9490 29 1 0.2489 -4.8015 0.0009 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575482891.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:53 Heat of formation + Delta-G solvation = 30.522414 kcal Electronic energy + Delta-G solvation = -12198.972625 eV Core-core repulsion = 10086.655075 eV Total energy + Delta-G solvation = -2112.317549 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.36797 -38.15092 -36.16931 -33.60331 -31.46157 -29.51907 -26.58888 -24.24889 -23.38196 -22.79311 -20.81477 -19.41950 -18.11011 -16.85789 -16.46248 -16.25799 -15.59228 -15.13561 -14.46368 -14.17560 -14.10055 -13.46797 -13.11483 -13.00740 -12.49079 -12.28246 -12.23976 -12.06474 -11.81014 -11.46073 -11.25654 -11.12783 -10.51074 -9.30587 -8.46490 -8.44797 -5.70748 0.76899 0.96594 1.40178 1.47145 1.53882 2.28644 2.83738 3.14505 3.44421 3.51693 3.86793 4.09098 4.23995 4.34408 4.43843 4.54830 4.76964 4.89897 4.93283 5.07588 5.19210 5.29708 5.35207 5.38655 5.45609 5.78672 5.87949 6.00771 6.06391 6.49614 6.85046 7.55325 7.68394 8.74738 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.069117 B = 0.007133 C = 0.006585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 405.012149 B = 3924.568007 C = 4250.852075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.036 4.036 3 Si 0.998 3.002 4 H -0.259 1.259 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.315 4.315 8 H 0.102 0.898 9 N -0.595 5.595 10 C 0.194 3.806 11 C -0.249 4.249 12 C -0.060 4.060 13 C -0.233 4.233 14 C 0.002 3.998 15 C -0.138 4.138 16 C -0.161 4.161 17 C -0.164 4.164 18 C -0.248 4.248 19 H 0.272 0.728 20 H 0.389 0.611 21 H 0.104 0.896 22 H 0.134 0.866 23 H 0.132 0.868 24 H 0.108 0.892 25 H 0.102 0.898 26 H 0.113 0.887 27 H 0.111 0.889 28 H 0.090 0.910 29 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.627 -11.738 -0.408 12.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.234 4.234 3 Si 0.822 3.178 4 H -0.183 1.183 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.444 4.444 8 H 0.119 0.881 9 N -0.202 5.202 10 C 0.078 3.922 11 C -0.273 4.273 12 C -0.079 4.079 13 C -0.255 4.255 14 C 0.001 3.999 15 C -0.156 4.156 16 C -0.198 4.198 17 C -0.201 4.201 18 C -0.273 4.273 19 H 0.081 0.919 20 H 0.222 0.778 21 H 0.122 0.878 22 H 0.152 0.848 23 H 0.150 0.850 24 H 0.126 0.874 25 H 0.120 0.880 26 H 0.132 0.868 27 H 0.130 0.870 28 H 0.108 0.892 29 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 4.545 -11.295 -0.410 12.182 hybrid contribution -0.512 1.287 0.021 1.385 sum 4.033 -10.008 -0.389 10.797 Atomic orbital electron populations 1.69807 1.07317 1.28770 1.51913 1.26148 0.96570 1.02856 0.97797 0.84771 0.78462 0.76869 0.77738 1.18280 1.20411 1.20420 1.20015 0.93218 0.83697 1.47496 0.88080 1.40955 1.07391 1.02389 1.69422 1.18285 0.92545 0.86199 0.95157 1.20604 0.92313 0.98601 1.15830 1.20975 0.99644 0.91536 0.95713 1.20666 0.93188 0.97775 1.13840 1.18934 0.93521 0.92279 0.95210 1.21046 1.00013 0.88545 1.05974 1.23136 1.00354 0.97007 0.99284 1.23048 1.03823 1.01569 0.91620 1.20223 0.98394 0.91179 1.17483 0.91855 0.77819 0.87796 0.84809 0.84992 0.87418 0.87978 0.86837 0.87047 0.89185 0.87959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.49 13.05 21.65 0.28 -53.21 15 2 C -0.04 -1.96 5.50 84.86 0.47 -1.50 15 3 Si 1.00 42.68 29.55 68.60 2.03 44.71 15 4 H -0.26 -10.50 7.11 99.48 0.71 -9.79 15 5 H -0.28 -11.67 7.11 99.48 0.71 -10.96 15 6 H -0.28 -11.68 7.11 99.48 0.71 -10.97 15 7 C -0.31 -17.30 9.56 84.04 0.80 -16.50 15 8 H 0.10 5.36 5.68 -2.91 -0.02 5.34 15 9 N -0.60 -31.92 5.43 -184.28 -1.00 -32.92 15 10 C 0.19 9.36 6.62 38.36 0.25 9.62 15 11 C -0.25 -11.11 9.30 22.43 0.21 -10.90 15 12 C -0.06 -2.20 10.04 22.25 0.22 -1.98 15 13 C -0.23 -7.97 9.30 22.31 0.21 -7.76 15 14 C 0.00 0.06 5.61 -19.89 -0.11 -0.06 15 15 C -0.14 -3.87 6.04 -11.54 -0.07 -3.94 15 16 C -0.16 -3.43 9.86 30.59 0.30 -3.13 15 17 C -0.16 -3.71 10.16 30.59 0.31 -3.39 15 18 C -0.25 -10.65 9.59 22.43 0.22 -10.43 15 19 H 0.27 14.61 8.31 -92.72 -0.77 13.84 15 20 H 0.39 21.45 7.90 -92.71 -0.73 20.72 15 21 H 0.10 4.74 5.96 -2.91 -0.02 4.72 15 22 H 0.13 3.98 8.06 -2.91 -0.02 3.96 15 23 H 0.13 3.65 6.01 -2.91 -0.02 3.64 15 24 H 0.11 2.93 8.14 -2.39 -0.02 2.91 15 25 H 0.10 2.11 6.17 -2.39 -0.01 2.09 15 26 H 0.11 1.92 8.14 -2.39 -0.02 1.90 15 27 H 0.11 2.06 8.14 -2.38 -0.02 2.04 15 28 H 0.09 2.15 8.14 -2.38 -0.02 2.13 15 29 H 0.10 4.27 8.06 -2.91 -0.02 4.25 15 Total: -1.00 -60.13 249.65 4.54 -55.59 By element: Atomic # 1 Polarization: 35.37 SS G_CDS: 0.43 Total: 35.80 kcal Atomic # 6 Polarization: -52.77 SS G_CDS: 2.81 Total: -49.97 kcal Atomic # 7 Polarization: -85.41 SS G_CDS: -0.72 Total: -86.13 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -60.13 4.54 -55.59 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575482891.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.110 kcal (2) G-P(sol) polarization free energy of solvation -60.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds