Wall clock time and date at job start Mon Mar 30 2020 02:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86793 * 119.99832 * 2 1 4 4 H 1.48509 * 109.47245 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47509 * 300.00259 * 3 2 1 6 6 H 1.48494 * 109.47307 * 60.00426 * 3 2 1 7 7 C 1.37876 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99903 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00063 * 359.97438 * 7 2 1 10 10 C 1.50706 * 109.90513 * 300.70445 * 9 7 2 11 11 O 1.20825 * 119.99859 * 264.29254 * 10 9 7 12 12 O 1.34224 * 120.00295 * 84.30213 * 10 9 7 13 13 C 1.53994 * 109.91926 * 179.59763 * 9 7 2 14 14 C 1.54588 * 105.14216 * 241.67413 * 13 9 7 15 15 H 1.09000 * 110.72407 * 263.59971 * 14 13 9 16 16 F 1.39896 * 110.72425 * 140.31489 * 14 13 9 17 17 C 1.54941 * 102.92290 * 21.95693 * 14 13 9 18 18 N 1.47896 * 109.91766 * 61.80320 * 9 7 2 19 19 H 0.97001 * 120.00267 * 359.97438 * 1 2 3 20 20 H 0.96700 * 117.00196 * 179.97438 * 12 10 9 21 21 H 1.08998 * 110.30926 * 0.59358 * 13 9 7 22 22 H 1.09005 * 110.30507 * 122.65912 * 13 9 7 23 23 H 1.09000 * 110.66501 * 81.01862 * 17 14 13 24 24 H 1.08993 * 110.66689 * 203.98497 * 17 14 13 25 25 H 1.00901 * 111.00410 * 214.73374 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 0.3684 -2.5820 1.2182 11 8 0.7568 -3.1568 2.2074 12 8 -0.8493 -2.0176 1.2046 13 6 2.2426 -3.6774 -0.0113 14 6 1.9524 -4.4373 -1.3259 15 1 1.2823 -5.2779 -1.1456 16 9 3.1424 -4.8698 -1.9208 17 6 1.2605 -3.3628 -2.2018 18 7 0.4297 -2.6067 -1.2257 19 1 -0.4850 0.8400 0.0004 20 1 -1.3792 -2.0972 2.0096 21 1 3.2683 -3.3087 -0.0060 22 1 2.0696 -4.3252 0.8481 23 1 1.9998 -2.7076 -2.6625 24 1 0.6356 -3.8306 -2.9626 25 1 -0.4366 -3.0893 -1.0392 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575564131.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:39 Heat of formation + Delta-G solvation = -152.658453 kcal Electronic energy + Delta-G solvation = -13871.690819 eV Core-core repulsion = 11184.827632 eV Total energy + Delta-G solvation = -2686.863187 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.074 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.55261 -41.12039 -38.45420 -36.58666 -34.49636 -30.73740 -30.04948 -26.68632 -24.24606 -22.53427 -20.88569 -19.11021 -18.33818 -17.92972 -17.16201 -16.71747 -15.98804 -15.83727 -15.68860 -14.76589 -14.41903 -14.14434 -13.54786 -12.94124 -12.89607 -12.76097 -12.73820 -12.29593 -12.12095 -11.90002 -11.57564 -11.19955 -11.16964 -10.51881 -9.08669 -8.03155 -6.29481 1.41049 1.46094 1.54976 1.69603 2.43166 2.68661 3.19056 3.43052 3.61401 3.73826 3.94211 4.16754 4.63401 4.70809 4.77307 4.97314 5.02122 5.33673 5.69715 5.91649 5.97671 6.11742 6.69838 6.85543 7.39537 7.55776 8.92701 Molecular weight = 203.07amu Principal moments of inertia in cm(-1) A = 0.031932 B = 0.015858 C = 0.012857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.653384 B = 1765.207825 C = 2177.221216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.041 3.959 3 Si 0.948 3.052 4 H -0.274 1.274 5 H -0.276 1.276 6 H -0.282 1.282 7 C -0.544 4.544 8 H 0.056 0.944 9 C 0.239 3.761 10 C 0.493 3.507 11 O -0.592 6.592 12 O -0.464 6.464 13 C -0.160 4.160 14 C 0.058 3.942 15 H 0.111 0.889 16 F -0.217 7.217 17 C 0.031 3.969 18 N -0.633 5.633 19 H 0.262 0.738 20 H 0.387 0.613 21 H 0.072 0.928 22 H 0.074 0.926 23 H 0.072 0.928 24 H 0.106 0.894 25 H 0.323 0.677 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.309 -4.890 -2.436 5.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.168 4.168 3 Si 0.773 3.227 4 H -0.199 1.199 5 H -0.202 1.202 6 H -0.208 1.208 7 C -0.582 4.582 8 H 0.074 0.926 9 C 0.149 3.851 10 C 0.339 3.661 11 O -0.487 6.487 12 O -0.270 6.270 13 C -0.199 4.199 14 C 0.020 3.980 15 H 0.128 0.872 16 F -0.198 7.198 17 C -0.100 4.100 18 N -0.262 5.262 19 H 0.071 0.929 20 H 0.243 0.757 21 H 0.091 0.909 22 H 0.093 0.907 23 H 0.090 0.910 24 H 0.124 0.876 25 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.059 -4.192 -2.830 5.167 hybrid contribution 0.253 0.051 1.183 1.211 sum -0.806 -4.141 -1.647 4.529 Atomic orbital electron populations 1.70185 1.05919 1.26781 1.43108 1.25665 0.95873 1.01624 0.93644 0.85684 0.79090 0.80268 0.77614 1.19873 1.20195 1.20818 1.20970 0.92159 0.89533 1.55521 0.92624 1.18972 0.87685 0.94918 0.83559 1.24811 0.79929 0.70470 0.90920 1.90500 1.74858 1.45747 1.37602 1.85037 1.27458 1.70988 1.43480 1.23355 1.01418 0.97348 0.97826 1.23399 0.83047 0.98279 0.93260 0.87160 1.92741 1.50273 1.91459 1.85318 1.23711 0.97581 0.92785 0.95898 1.63150 1.04452 1.49252 1.09300 0.92893 0.75713 0.90932 0.90731 0.90974 0.87615 0.86050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.40 10.28 21.45 0.22 -43.18 15 2 C 0.04 2.14 5.25 84.65 0.44 2.58 15 3 Si 0.95 42.06 29.54 68.60 2.03 44.09 15 4 H -0.27 -12.15 7.11 99.48 0.71 -11.45 15 5 H -0.28 -12.00 7.11 99.48 0.71 -11.29 15 6 H -0.28 -12.36 7.11 99.48 0.71 -11.65 15 7 C -0.54 -28.88 8.20 25.60 0.21 -28.67 15 8 H 0.06 3.01 7.33 -2.91 -0.02 2.99 15 9 C 0.24 11.26 0.68 2.18 0.00 11.26 15 10 C 0.49 23.55 6.45 71.24 0.46 24.01 15 11 O -0.59 -29.92 16.34 21.97 0.36 -29.56 15 12 O -0.46 -20.19 10.61 -51.35 -0.54 -20.74 15 13 C -0.16 -6.69 5.87 31.47 0.18 -6.51 15 14 C 0.06 2.00 4.87 31.80 0.15 2.15 15 15 H 0.11 3.14 8.14 -2.39 -0.02 3.12 15 16 F -0.22 -7.71 17.19 44.97 0.77 -6.93 15 17 C 0.03 1.09 7.34 86.60 0.64 1.72 15 18 N -0.63 -26.92 6.36 -465.80 -2.96 -29.88 15 19 H 0.26 13.16 8.31 -92.71 -0.77 12.39 15 20 H 0.39 13.10 9.10 -74.06 -0.67 12.43 15 21 H 0.07 3.20 7.36 -2.39 -0.02 3.18 15 22 H 0.07 3.12 6.76 -2.38 -0.02 3.11 15 23 H 0.07 2.80 8.14 -2.39 -0.02 2.78 15 24 H 0.11 2.95 8.14 -2.39 -0.02 2.93 15 25 H 0.32 12.68 8.13 -89.69 -0.73 11.95 15 Total: -1.00 -60.97 221.71 1.80 -59.18 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: -0.17 Total: 20.48 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: 2.09 Total: 6.54 kcal Atomic # 7 Polarization: -70.32 SS G_CDS: -2.74 Total: -73.06 kcal Atomic # 8 Polarization: -50.11 SS G_CDS: -0.19 Total: -50.30 kcal Atomic # 9 Polarization: -7.71 SS G_CDS: 0.77 Total: -6.93 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -60.97 1.80 -59.18 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575564131.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.480 kcal (2) G-P(sol) polarization free energy of solvation -60.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds