Wall clock time and date at job start Mon Mar 30 2020 02:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00211 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99752 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99933 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99926 * 3 2 1 7 7 C 1.38817 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99635 * 359.97438 * 7 2 1 9 9 N 1.36932 * 120.00011 * 180.02562 * 7 2 1 10 10 C 1.46499 * 119.99549 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46939 * 180.02562 * 10 9 7 12 12 O 1.42903 * 108.84900 * 302.87389 * 11 10 9 13 13 C 1.52942 * 108.88794 * 184.43704 * 11 10 9 14 14 C 1.55153 * 108.96085 * 209.10464 * 13 11 10 15 15 S 1.83986 * 100.90995 * 41.43490 * 14 13 11 16 16 C 1.53703 * 108.89092 * 61.44993 * 11 10 9 17 17 H 0.96998 * 119.99442 * 359.97438 * 1 2 3 18 18 H 0.96993 * 120.00149 * 359.97438 * 9 7 2 19 19 H 1.09008 * 109.47182 * 299.99726 * 10 9 7 20 20 H 1.08994 * 109.47256 * 60.00002 * 10 9 7 21 21 H 0.96698 * 113.99860 * 59.30014 * 12 11 10 22 22 H 1.09005 * 109.60255 * 329.03029 * 13 11 10 23 23 H 1.08996 * 109.60543 * 89.17276 * 13 11 10 24 24 H 1.09010 * 111.12888 * 283.52541 * 14 13 11 25 25 H 1.09000 * 111.17158 * 159.36364 * 14 13 11 26 26 H 1.09004 * 110.34663 * 242.49506 * 16 11 10 27 27 H 1.09001 * 110.34168 * 4.64758 * 16 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 1.4477 2.6527 -0.7001 6 1 3.5478 1.4401 -0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4709 0.0000 11 6 5.6163 -2.1913 0.0013 12 8 5.9370 -1.3848 -1.1339 13 6 6.3668 -3.5193 -0.1107 14 6 7.7407 -3.3832 0.5972 15 16 7.2657 -2.4333 2.0996 16 6 5.9776 -1.4177 1.2793 17 1 -0.4849 0.8401 0.0004 18 1 3.8646 -0.3622 0.0004 19 1 3.8484 -3.0427 0.8898 20 1 3.8491 -3.0422 -0.8902 21 1 5.4744 -0.5359 -1.1566 22 1 5.7862 -4.3088 0.3665 23 1 6.5196 -3.7655 -1.1614 24 1 8.4450 -2.8214 -0.0165 25 1 8.1458 -4.3599 0.8616 26 1 6.3741 -0.4340 1.0276 27 1 5.1033 -1.3197 1.9229 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575566463.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:14 Heat of formation + Delta-G solvation = -38.819212 kcal Electronic energy + Delta-G solvation = -11645.448654 eV Core-core repulsion = 9529.735083 eV Total energy + Delta-G solvation = -2115.713571 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 203.072 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.76163 -34.28837 -33.41941 -31.37530 -29.12486 -26.71668 -24.10960 -21.72896 -20.05860 -18.23910 -16.73483 -16.32736 -14.83665 -14.71769 -14.51461 -14.26333 -13.44406 -12.83772 -12.67247 -12.60656 -12.07903 -11.65768 -11.54265 -11.49327 -10.96862 -10.74259 -10.39326 -10.23389 -9.70640 -9.46049 -9.03521 -7.67056 -7.39379 -5.86606 -3.24830 1.88804 2.35139 3.25068 3.29970 3.37571 4.29222 4.48149 4.48783 4.66520 4.93098 5.11760 5.28023 5.44553 5.47015 5.54964 5.67323 5.78572 5.93767 6.05986 6.39387 6.47772 7.71823 7.88513 8.30451 9.06355 9.78505 9.95311 11.31412 Molecular weight = 203.07amu Principal moments of inertia in cm(-1) A = 0.053974 B = 0.009719 C = 0.009348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.647975 B = 2880.233832 C = 2994.628341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.008 3.992 3 Si 0.884 3.116 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.279 1.279 7 C -0.249 4.249 8 H 0.092 0.908 9 N -0.753 5.753 10 C 0.136 3.864 11 C 0.119 3.881 12 O -0.558 6.558 13 C -0.110 4.110 14 C -0.064 4.064 15 S -0.302 6.302 16 C -0.093 4.093 17 H 0.261 0.739 18 H 0.356 0.644 19 H 0.042 0.958 20 H 0.041 0.959 21 H 0.381 0.619 22 H 0.093 0.907 23 H 0.093 0.907 24 H 0.091 0.909 25 H 0.105 0.895 26 H 0.092 0.908 27 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.304 -4.652 0.496 15.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.188 4.188 3 Si 0.714 3.286 4 H -0.209 1.209 5 H -0.214 1.214 6 H -0.206 1.206 7 C -0.379 4.379 8 H 0.110 0.890 9 N -0.401 5.401 10 C 0.007 3.993 11 C 0.077 3.923 12 O -0.366 6.366 13 C -0.149 4.149 14 C -0.213 4.213 15 S -0.077 6.077 16 C -0.241 4.241 17 H 0.071 0.929 18 H 0.190 0.810 19 H 0.059 0.941 20 H 0.059 0.941 21 H 0.230 0.770 22 H 0.112 0.888 23 H 0.112 0.888 24 H 0.109 0.891 25 H 0.124 0.876 26 H 0.111 0.889 27 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 14.841 -5.266 1.507 15.819 hybrid contribution -0.295 1.875 -0.968 2.130 sum 14.546 -3.392 0.539 14.946 Atomic orbital electron populations 1.69693 1.05097 1.25982 1.56928 1.24683 0.95252 0.97194 1.01689 0.86578 0.79075 0.85089 0.77825 1.20914 1.21444 1.20574 1.19014 0.80187 0.94919 1.43767 0.88992 1.42643 1.04343 1.01617 1.91450 1.21398 0.87685 0.90096 1.00088 1.22077 0.96109 0.90143 0.83969 1.86479 1.70771 1.34091 1.45234 1.22248 0.93892 0.95876 1.02902 1.24321 0.99832 1.02095 0.95002 1.87704 1.49801 1.50373 1.19784 1.24873 0.99531 1.00470 0.99272 0.92871 0.81046 0.94059 0.94112 0.77009 0.88807 0.88847 0.89072 0.87616 0.88898 0.86599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.71 13.97 55.49 0.78 -27.94 15 2 C 0.01 0.23 5.50 -17.43 -0.10 0.14 15 3 Si 0.88 21.32 27.73 -169.99 -4.71 16.60 15 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 15 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 15 6 H -0.28 -6.13 6.52 56.52 0.37 -5.76 15 7 C -0.25 -6.87 10.47 -15.06 -0.16 -7.03 15 8 H 0.09 2.73 8.06 -52.48 -0.42 2.31 15 9 N -0.75 -16.96 4.74 -59.91 -0.28 -17.25 15 10 C 0.14 2.53 4.89 -4.04 -0.02 2.51 15 11 C 0.12 1.84 1.01 -90.28 -0.09 1.75 15 12 O -0.56 -9.03 12.71 -35.23 -0.45 -9.48 15 13 C -0.11 -1.39 5.49 -25.62 -0.14 -1.53 15 14 C -0.06 -0.74 7.52 38.30 0.29 -0.45 15 15 S -0.30 -4.33 23.23 -107.50 -2.50 -6.83 15 16 C -0.09 -1.43 6.12 37.52 0.23 -1.20 15 17 H 0.26 7.67 8.31 -40.82 -0.34 7.33 15 18 H 0.36 7.63 4.02 -40.82 -0.16 7.47 15 19 H 0.04 0.78 8.14 -51.92 -0.42 0.36 15 20 H 0.04 0.79 8.14 -51.93 -0.42 0.37 15 21 H 0.38 5.96 7.58 45.56 0.35 6.31 15 22 H 0.09 1.10 7.83 -51.93 -0.41 0.70 15 23 H 0.09 1.12 8.04 -51.93 -0.42 0.70 15 24 H 0.09 1.01 8.14 -51.92 -0.42 0.59 15 25 H 0.11 0.98 8.14 -51.93 -0.42 0.56 15 26 H 0.09 1.37 7.92 -51.93 -0.41 0.95 15 27 H 0.12 1.94 7.44 -51.93 -0.39 1.56 15 LS Contribution 235.89 15.07 3.55 3.55 Total: -1.00 -30.48 235.89 -6.32 -36.80 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -2.72 Total: 10.34 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: 0.01 Total: -5.81 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: 0.49 Total: -45.18 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: -0.45 Total: -9.48 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.71 Total: 16.60 kcal Atomic # 16 Polarization: -4.33 SS G_CDS: -2.50 Total: -6.83 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -30.48 -6.32 -36.80 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575566463.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.016 kcal (2) G-P(sol) polarization free energy of solvation -30.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds