Wall clock time and date at job start Mon Mar 30 2020 02:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00211 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99752 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99933 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99926 * 3 2 1 7 7 C 1.38817 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99635 * 359.97438 * 7 2 1 9 9 N 1.36932 * 120.00011 * 180.02562 * 7 2 1 10 10 C 1.46499 * 119.99549 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46939 * 180.02562 * 10 9 7 12 12 O 1.42903 * 108.84900 * 302.87389 * 11 10 9 13 13 C 1.52942 * 108.88794 * 184.43704 * 11 10 9 14 14 C 1.55153 * 108.96085 * 209.10464 * 13 11 10 15 15 S 1.83986 * 100.90995 * 41.43490 * 14 13 11 16 16 C 1.53703 * 108.89092 * 61.44993 * 11 10 9 17 17 H 0.96998 * 119.99442 * 359.97438 * 1 2 3 18 18 H 0.96993 * 120.00149 * 359.97438 * 9 7 2 19 19 H 1.09008 * 109.47182 * 299.99726 * 10 9 7 20 20 H 1.08994 * 109.47256 * 60.00002 * 10 9 7 21 21 H 0.96698 * 113.99860 * 59.30014 * 12 11 10 22 22 H 1.09005 * 109.60255 * 329.03029 * 13 11 10 23 23 H 1.08996 * 109.60543 * 89.17276 * 13 11 10 24 24 H 1.09010 * 111.12888 * 283.52541 * 14 13 11 25 25 H 1.09000 * 111.17158 * 159.36364 * 14 13 11 26 26 H 1.09004 * 110.34663 * 242.49506 * 16 11 10 27 27 H 1.09001 * 110.34168 * 4.64758 * 16 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 1.4477 2.6527 -0.7001 6 1 3.5478 1.4401 -0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4709 0.0000 11 6 5.6163 -2.1913 0.0013 12 8 5.9370 -1.3848 -1.1339 13 6 6.3668 -3.5193 -0.1107 14 6 7.7407 -3.3832 0.5972 15 16 7.2657 -2.4333 2.0996 16 6 5.9776 -1.4177 1.2793 17 1 -0.4849 0.8401 0.0004 18 1 3.8646 -0.3622 0.0004 19 1 3.8484 -3.0427 0.8898 20 1 3.8491 -3.0422 -0.8902 21 1 5.4744 -0.5359 -1.1566 22 1 5.7862 -4.3088 0.3665 23 1 6.5196 -3.7655 -1.1614 24 1 8.4450 -2.8214 -0.0165 25 1 8.1458 -4.3599 0.8616 26 1 6.3741 -0.4340 1.0276 27 1 5.1033 -1.3197 1.9229 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575566463.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:14 Heat of formation + Delta-G solvation = -61.541045 kcal Electronic energy + Delta-G solvation = -11646.433946 eV Core-core repulsion = 9529.735083 eV Total energy + Delta-G solvation = -2116.698864 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 203.072 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.06580 -36.13370 -34.57066 -33.35873 -30.42851 -28.20051 -25.64951 -23.37213 -21.31036 -20.13634 -17.96199 -17.67171 -16.63616 -16.24105 -15.74852 -15.53827 -14.98263 -14.51121 -14.19641 -13.97824 -13.43142 -13.20010 -12.89339 -12.78894 -12.46697 -12.20254 -12.04922 -11.81926 -11.47038 -11.06329 -10.68993 -9.40510 -8.77751 -8.06675 -5.43192 0.80952 1.30003 1.33637 1.40014 1.46572 2.44600 3.05896 3.25443 3.32195 3.46081 3.71374 3.92616 4.10173 4.25782 4.47944 4.58072 4.72325 4.80930 4.84894 4.95894 5.09877 5.69472 6.14667 6.51475 7.00729 7.72043 7.91283 9.14473 Molecular weight = 203.07amu Principal moments of inertia in cm(-1) A = 0.053974 B = 0.009719 C = 0.009348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.647975 B = 2880.233832 C = 2994.628341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.060 4.060 3 Si 0.953 3.047 4 H -0.278 1.278 5 H -0.295 1.295 6 H -0.242 1.242 7 C -0.241 4.241 8 H 0.056 0.944 9 N -0.752 5.752 10 C 0.133 3.867 11 C 0.128 3.872 12 O -0.561 6.561 13 C -0.110 4.110 14 C -0.048 4.048 15 S -0.326 6.326 16 C -0.093 4.093 17 H 0.259 0.741 18 H 0.365 0.635 19 H 0.039 0.961 20 H 0.036 0.964 21 H 0.382 0.618 22 H 0.101 0.899 23 H 0.105 0.895 24 H 0.100 0.900 25 H 0.134 0.866 26 H 0.100 0.900 27 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.904 -4.543 0.175 17.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.632 5.632 2 C -0.252 4.252 3 Si 0.779 3.221 4 H -0.204 1.204 5 H -0.222 1.222 6 H -0.166 1.166 7 C -0.371 4.371 8 H 0.074 0.926 9 N -0.399 5.399 10 C 0.006 3.994 11 C 0.086 3.914 12 O -0.368 6.368 13 C -0.149 4.149 14 C -0.196 4.196 15 S -0.101 6.101 16 C -0.241 4.241 17 H 0.068 0.932 18 H 0.199 0.801 19 H 0.057 0.943 20 H 0.054 0.946 21 H 0.232 0.768 22 H 0.120 0.880 23 H 0.123 0.877 24 H 0.118 0.882 25 H 0.152 0.848 26 H 0.118 0.882 27 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 17.498 -5.188 1.181 18.290 hybrid contribution -1.118 1.706 -0.864 2.215 sum 16.380 -3.482 0.318 16.749 Atomic orbital electron populations 1.69885 1.07296 1.26892 1.59088 1.25543 0.96122 1.01405 1.02108 0.85457 0.79070 0.79360 0.78201 1.20446 1.22218 1.16638 1.18968 0.82405 0.93588 1.42169 0.92584 1.42531 1.02638 1.03530 1.91205 1.21536 0.89960 0.88357 0.99528 1.22084 0.93811 0.91527 0.84020 1.86490 1.70642 1.34256 1.45451 1.22282 0.94408 0.94240 1.03996 1.24434 0.99171 1.03049 0.92938 1.87825 1.49370 1.50958 1.21918 1.24750 0.99343 1.01148 0.98869 0.93186 0.80094 0.94320 0.94616 0.76828 0.88008 0.87658 0.88158 0.84799 0.88155 0.88468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.19 13.97 21.65 0.30 -61.88 15 2 C -0.06 -3.46 5.50 84.86 0.47 -2.99 15 3 Si 0.95 43.49 27.73 68.60 1.90 45.39 15 4 H -0.28 -12.48 7.11 99.48 0.71 -11.77 15 5 H -0.30 -13.82 7.11 99.48 0.71 -13.11 15 6 H -0.24 -9.46 6.52 99.48 0.65 -8.81 15 7 C -0.24 -13.42 10.47 84.04 0.88 -12.54 15 8 H 0.06 3.46 8.06 -2.91 -0.02 3.44 15 9 N -0.75 -33.14 4.74 -343.44 -1.63 -34.77 15 10 C 0.13 4.84 4.89 86.38 0.42 5.26 15 11 C 0.13 3.65 1.01 -10.58 -0.01 3.64 15 12 O -0.56 -16.52 12.71 -148.98 -1.89 -18.42 15 13 C -0.11 -2.43 5.49 31.31 0.17 -2.26 15 14 C -0.05 -0.93 7.52 72.72 0.55 -0.38 15 15 S -0.33 -8.56 23.23 -56.49 -1.31 -9.88 15 16 C -0.09 -2.65 6.12 72.22 0.44 -2.21 15 17 H 0.26 15.62 8.31 -92.71 -0.77 14.85 15 18 H 0.36 14.84 4.02 -92.71 -0.37 14.47 15 19 H 0.04 1.44 8.14 -2.38 -0.02 1.42 15 20 H 0.04 1.35 8.14 -2.39 -0.02 1.33 15 21 H 0.38 10.84 7.58 -74.06 -0.56 10.28 15 22 H 0.10 2.10 7.83 -2.38 -0.02 2.08 15 23 H 0.11 2.13 8.04 -2.39 -0.02 2.11 15 24 H 0.10 1.81 8.14 -2.38 -0.02 1.79 15 25 H 0.13 1.86 8.14 -2.39 -0.02 1.84 15 26 H 0.10 2.70 7.92 -2.38 -0.02 2.68 15 27 H 0.10 3.15 7.44 -2.39 -0.02 3.13 15 Total: -1.00 -65.78 235.89 0.48 -65.30 By element: Atomic # 1 Polarization: 25.55 SS G_CDS: 0.18 Total: 25.73 kcal Atomic # 6 Polarization: -14.40 SS G_CDS: 2.92 Total: -11.48 kcal Atomic # 7 Polarization: -95.33 SS G_CDS: -1.32 Total: -96.65 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -1.89 Total: -18.42 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 1.90 Total: 45.39 kcal Atomic # 16 Polarization: -8.56 SS G_CDS: -1.31 Total: -9.88 kcal Total: -65.78 0.48 -65.30 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575566463.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.761 kcal (2) G-P(sol) polarization free energy of solvation -65.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds