Wall clock time and date at job start Mon Mar 30 2020 02:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99719 * 2 1 4 4 H 1.48501 * 109.47078 * 269.99891 * 3 2 1 5 5 H 1.48500 * 109.47076 * 30.00051 * 3 2 1 6 6 H 1.48494 * 109.47153 * 149.99782 * 3 2 1 7 7 C 1.38807 * 120.00401 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00394 * 199.23024 * 7 2 1 9 9 N 1.36941 * 119.99863 * 19.22591 * 7 2 1 10 10 C 1.46373 * 119.64636 * 28.06664 * 9 7 2 11 11 C 1.53235 * 109.48838 * 245.08386 * 10 9 7 12 12 S 1.81733 * 108.80257 * 302.34833 * 11 10 9 13 13 C 1.81747 * 102.30688 * 54.53587 * 12 11 10 14 14 H 1.09000 * 109.57691 * 65.39574 * 13 12 11 15 15 C 1.52995 * 109.58189 * 185.66689 * 13 12 11 16 16 O 1.42901 * 109.47391 * 175.00405 * 15 13 12 17 17 C 1.46383 * 119.64397 * 208.06777 * 9 7 2 18 18 H 0.96994 * 120.00294 * 0.02562 * 1 2 3 19 19 H 1.09001 * 109.46535 * 125.08342 * 10 9 7 20 20 H 1.08998 * 109.46520 * 5.09224 * 10 9 7 21 21 H 1.09004 * 109.58039 * 182.54823 * 11 10 9 22 22 H 1.09005 * 109.69166 * 62.21280 * 11 10 9 23 23 H 1.09000 * 109.47585 * 294.99912 * 15 13 12 24 24 H 1.09002 * 109.47341 * 55.00094 * 15 13 12 25 25 H 0.96691 * 114.00711 * 180.02562 * 16 15 13 26 26 H 1.09001 * 109.46718 * 354.90861 * 17 9 7 27 27 H 1.09001 * 109.46533 * 234.92150 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0451 -1.2283 0.3075 9 7 1.3830 -2.3548 -0.3916 10 6 0.2769 -2.2885 -1.3480 11 6 -1.0171 -2.7445 -0.6655 12 16 -0.7803 -4.4295 -0.0272 13 6 0.7061 -4.2482 1.0028 14 1 0.4885 -3.5927 1.8460 15 6 1.1425 -5.6206 1.5193 16 8 2.3748 -5.4918 2.2314 17 6 1.8257 -3.6401 0.1514 18 1 -0.4850 0.8400 -0.0004 19 1 0.4898 -2.9402 -2.1953 20 1 0.1609 -1.2630 -1.6986 21 1 -1.8329 -2.7389 -1.3884 22 1 -1.2546 -2.0716 0.1585 23 1 0.3775 -6.0180 2.1863 24 1 1.2787 -6.2993 0.6773 25 1 2.7121 -6.3250 2.5878 26 1 2.7104 -3.4879 0.7697 27 1 2.0673 -4.3168 -0.6682 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642872996.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:26 Heat of formation + Delta-G solvation = -30.181084 kcal Electronic energy + Delta-G solvation = -11813.611008 eV Core-core repulsion = 9698.272014 eV Total energy + Delta-G solvation = -2115.338994 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 203.072 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -37.20005 -35.94206 -32.18296 -30.78917 -29.00186 -25.39935 -23.53415 -21.22648 -20.18216 -17.51919 -16.84335 -15.32788 -15.20358 -14.26822 -14.00895 -13.47374 -13.37850 -12.79509 -12.34965 -12.20313 -11.41348 -11.20032 -10.91921 -10.81374 -10.68769 -10.13323 -9.93723 -9.78213 -9.70213 -8.94291 -8.47183 -7.15555 -6.65372 -5.88921 -3.32507 2.50611 3.35149 3.39625 3.42465 3.43892 4.44052 4.75746 5.20009 5.29581 5.43384 5.56753 5.83454 6.13598 6.18730 6.29607 6.41376 6.60697 6.76129 6.85313 7.30392 7.38407 7.76004 7.84296 8.37189 9.12916 9.74645 10.26450 11.18832 Molecular weight = 203.07amu Principal moments of inertia in cm(-1) A = 0.041393 B = 0.012553 C = 0.010350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.287481 B = 2230.083695 C = 2704.723245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.004 3.996 3 Si 0.906 3.094 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.259 4.259 8 H 0.069 0.931 9 N -0.595 5.595 10 C 0.168 3.832 11 C -0.067 4.067 12 S -0.318 6.318 13 C -0.062 4.062 14 H 0.089 0.911 15 C 0.101 3.899 16 O -0.564 6.564 17 C 0.159 3.841 18 H 0.255 0.745 19 H 0.016 0.984 20 H 0.098 0.902 21 H 0.079 0.921 22 H 0.107 0.893 23 H 0.044 0.956 24 H 0.049 0.951 25 H 0.374 0.626 26 H 0.072 0.928 27 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.556 -8.112 0.646 8.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.195 4.195 3 Si 0.736 3.264 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.388 4.388 8 H 0.087 0.913 9 N -0.316 5.316 10 C 0.041 3.959 11 C -0.217 4.217 12 S -0.093 6.093 13 C -0.193 4.193 14 H 0.107 0.893 15 C 0.021 3.979 16 O -0.369 6.369 17 C 0.031 3.969 18 H 0.065 0.935 19 H 0.034 0.966 20 H 0.116 0.884 21 H 0.098 0.902 22 H 0.125 0.875 23 H 0.062 0.938 24 H 0.068 0.932 25 H 0.220 0.780 26 H 0.090 0.910 27 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -0.253 -8.229 0.282 8.238 hybrid contribution 0.873 1.334 0.533 1.681 sum 0.620 -6.895 0.815 6.970 Atomic orbital electron populations 1.69987 1.05285 1.25711 1.53512 1.25040 0.95306 0.98607 1.00524 0.86232 0.79189 0.83297 0.77717 1.21356 1.21768 1.20385 1.19295 0.93676 0.85065 1.40793 0.91306 1.44115 1.38138 1.01948 1.47385 1.20787 0.84693 1.01216 0.89236 1.24073 1.02512 0.91057 1.04053 1.85868 1.37969 1.22100 1.63365 1.23636 0.97143 0.98127 1.00419 0.89301 1.21858 0.85505 0.95944 0.94593 1.86548 1.39651 1.36161 1.74568 1.21010 0.94176 0.87618 0.94096 0.93493 0.96646 0.88379 0.90227 0.87465 0.93754 0.93245 0.78020 0.90982 0.94873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.00 10.04 55.49 0.56 -24.45 15 2 C 0.00 0.11 4.81 -17.43 -0.08 0.02 15 3 Si 0.91 21.50 29.60 -169.99 -5.03 16.47 15 4 H -0.29 -6.78 7.11 56.52 0.40 -6.38 15 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 15 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 7 C -0.26 -7.10 9.46 -15.06 -0.14 -7.24 15 8 H 0.07 1.88 7.88 -52.49 -0.41 1.47 15 9 N -0.59 -15.12 2.81 -173.15 -0.49 -15.61 15 10 C 0.17 4.03 5.37 -3.99 -0.02 4.01 15 11 C -0.07 -1.50 6.46 37.28 0.24 -1.26 15 12 S -0.32 -6.48 21.66 -107.50 -2.33 -8.81 15 13 C -0.06 -1.27 3.09 -26.61 -0.08 -1.35 15 14 H 0.09 2.06 8.14 -51.93 -0.42 1.64 15 15 C 0.10 1.62 6.55 37.16 0.24 1.86 15 16 O -0.56 -8.66 12.87 -35.23 -0.45 -9.12 15 17 C 0.16 3.56 5.36 -3.98 -0.02 3.53 15 18 H 0.26 6.88 8.31 -40.82 -0.34 6.55 15 19 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 15 20 H 0.10 2.56 5.92 -51.93 -0.31 2.26 15 21 H 0.08 1.59 8.14 -51.93 -0.42 1.17 15 22 H 0.11 2.70 7.05 -51.93 -0.37 2.33 15 23 H 0.04 0.66 8.14 -51.93 -0.42 0.23 15 24 H 0.05 0.74 8.14 -51.93 -0.42 0.32 15 25 H 0.37 3.55 9.12 45.56 0.42 3.97 15 26 H 0.07 1.65 7.39 -51.93 -0.38 1.27 15 27 H 0.03 0.71 8.14 -51.93 -0.42 0.29 15 LS Contribution 233.92 15.07 3.53 3.53 Total: -1.00 -29.28 233.92 -6.81 -36.09 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -2.73 Total: 2.32 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: 0.13 Total: -0.42 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: 0.07 Total: -40.05 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: -0.45 Total: -9.12 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal Atomic # 16 Polarization: -6.48 SS G_CDS: -2.33 Total: -8.81 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -29.28 -6.81 -36.09 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642872996.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.906 kcal (2) G-P(sol) polarization free energy of solvation -29.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds