Wall clock time and date at job start Mon Mar 30 2020 02:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30908 * 1 3 3 Si 1.86803 * 119.99979 * 2 1 4 4 H 1.48491 * 109.47221 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47129 * 300.00525 * 3 2 1 6 6 H 1.48500 * 109.46926 * 60.00231 * 3 2 1 7 7 C 1.39862 * 120.00074 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00051 * 194.20129 * 7 2 1 9 9 C 1.41136 * 120.00100 * 14.20910 * 7 2 1 10 10 C 1.40890 * 120.15684 * 26.20153 * 9 7 2 11 11 C 1.36333 * 119.83722 * 179.97438 * 10 9 7 12 12 C 1.39567 * 120.16121 * 359.97438 * 11 10 9 13 13 N 1.38865 * 119.84066 * 180.02562 * 12 11 10 14 14 C 1.47480 * 110.99666 * 218.47715 * 13 12 11 15 15 C 1.53517 * 87.93155 * 221.29491 * 14 13 12 16 16 C 1.47486 * 110.99903 * 122.50871 * 13 12 11 17 17 C 1.39563 * 120.31520 * 0.28015 * 12 11 10 18 18 C 1.36336 * 120.16022 * 359.48083 * 17 12 11 19 19 H 0.97001 * 119.99853 * 359.97438 * 1 2 3 20 20 H 1.07996 * 120.07976 * 0.02562 * 10 9 7 21 21 H 1.07996 * 119.92142 * 180.02562 * 11 10 9 22 22 H 1.08999 * 113.48180 * 336.06242 * 14 13 12 23 23 H 1.09004 * 113.47687 * 106.53072 * 14 13 12 24 24 H 1.09000 * 114.16791 * 139.66835 * 15 14 13 25 25 H 1.08996 * 114.17489 * 272.38229 * 15 14 13 26 26 H 1.08998 * 113.47430 * 253.46951 * 16 13 12 27 27 H 1.09005 * 113.47591 * 23.93472 * 16 13 12 28 28 H 1.08004 * 119.91847 * 179.72526 * 17 12 11 29 29 H 1.08004 * 120.08162 * 180.27707 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6178 0.0000 4 1 3.7030 1.3465 -0.0006 5 1 1.8842 2.3965 -1.2124 6 1 1.8843 2.3964 1.2125 7 6 2.0084 -1.2112 -0.0005 8 1 3.0637 -1.2256 0.2289 9 6 1.3351 -2.4147 -0.3011 10 6 0.1797 -2.3971 -1.1071 11 6 -0.4652 -3.5635 -1.3938 12 6 0.0168 -4.7731 -0.8914 13 7 -0.6450 -5.9573 -1.1880 14 6 -0.6591 -6.8610 -0.0226 15 6 -0.3700 -8.0195 -0.9876 16 6 0.2588 -6.9163 -1.8503 17 6 1.1577 -4.7975 -0.0879 18 6 1.8156 -3.6394 0.2029 19 1 -0.4850 0.8401 0.0004 20 1 -0.1937 -1.4619 -1.4976 21 1 -1.3508 -3.5516 -2.0118 22 1 0.1496 -6.6719 0.6834 23 1 -1.6336 -6.9313 0.4607 24 1 0.3440 -8.7498 -0.6069 25 1 -1.2616 -8.4718 -1.4217 26 1 0.0622 -7.0334 -2.9159 27 1 1.3124 -6.7419 -1.6320 28 1 1.5226 -5.7367 0.3011 29 1 2.7010 -3.6603 0.8211 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687715098.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:53 Heat of formation + Delta-G solvation = 42.979276 kcal Electronic energy + Delta-G solvation = -12543.897982 eV Core-core repulsion = 10432.120603 eV Total energy + Delta-G solvation = -2111.777379 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.55194 -38.69103 -35.45335 -32.22189 -31.35534 -29.16684 -26.72801 -25.86200 -23.22428 -22.20110 -20.48374 -19.24640 -17.99033 -17.07705 -16.52757 -15.70877 -15.33861 -15.06837 -14.80181 -14.01827 -13.84550 -13.57906 -13.21729 -12.87157 -12.67423 -12.40079 -12.25554 -11.86361 -11.57880 -11.50912 -11.44854 -11.04505 -9.71768 -9.51745 -9.13412 -8.65363 -6.37329 0.81665 1.09706 1.37583 1.46828 1.53278 2.19183 2.66069 3.31432 3.58926 3.70526 4.08525 4.26468 4.42217 4.56316 4.61058 4.75838 4.83262 4.96532 4.98705 5.08274 5.23166 5.29484 5.37797 5.41746 5.63652 5.71430 5.96772 6.06944 6.29327 6.56894 6.73232 6.88484 7.05726 8.30673 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.087356 B = 0.007722 C = 0.007429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 320.450233 B = 3625.344266 C = 3768.203367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.032 3.968 3 Si 0.987 3.013 4 H -0.257 1.257 5 H -0.264 1.264 6 H -0.265 1.265 7 C -0.494 4.494 8 H 0.078 0.922 9 C 0.079 3.921 10 C -0.183 4.183 11 C -0.084 4.084 12 C -0.078 4.078 13 N -0.446 5.446 14 C -0.012 4.012 15 C -0.123 4.123 16 C -0.005 4.005 17 C -0.112 4.112 18 C -0.232 4.232 19 H 0.289 0.711 20 H 0.105 0.895 21 H 0.100 0.900 22 H 0.069 0.931 23 H 0.080 0.920 24 H 0.095 0.905 25 H 0.102 0.898 26 H 0.082 0.918 27 H 0.062 0.938 28 H 0.120 0.880 29 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.952 -7.558 -0.922 7.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.183 4.183 3 Si 0.808 3.192 4 H -0.180 1.180 5 H -0.189 1.189 6 H -0.190 1.190 7 C -0.523 4.523 8 H 0.097 0.903 9 C 0.076 3.924 10 C -0.203 4.203 11 C -0.103 4.103 12 C -0.173 4.173 13 N -0.165 5.165 14 C -0.139 4.139 15 C -0.160 4.160 16 C -0.132 4.132 17 C -0.132 4.132 18 C -0.252 4.252 19 H 0.099 0.901 20 H 0.123 0.877 21 H 0.118 0.882 22 H 0.087 0.913 23 H 0.098 0.902 24 H 0.114 0.886 25 H 0.120 0.880 26 H 0.100 0.900 27 H 0.080 0.920 28 H 0.138 0.862 29 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.121 -7.167 -1.233 7.274 hybrid contribution 0.914 0.917 0.487 1.383 sum 1.035 -6.251 -0.746 6.380 Atomic orbital electron populations 1.69915 1.09059 1.30565 1.35766 1.26832 0.95570 1.04723 0.91173 0.85080 0.79319 0.75849 0.78977 1.18025 1.18865 1.18975 1.19860 0.97213 0.92048 1.43161 0.90349 1.18048 0.92080 0.93267 0.88976 1.21013 0.99870 0.96869 1.02595 1.20456 0.98436 0.91957 0.99426 1.18860 0.98196 0.92149 1.08126 1.66276 1.36875 0.99579 1.13819 1.24042 1.02233 0.93142 0.94531 1.23068 1.01854 0.95216 0.95894 1.23956 0.95984 0.92674 1.00599 1.20930 0.95695 0.97459 0.99070 1.20866 1.03769 0.93309 1.07224 0.90062 0.87703 0.88174 0.91275 0.90200 0.88608 0.87960 0.89984 0.92001 0.86238 0.88083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.06 10.85 21.82 0.24 -43.82 15 2 C 0.03 1.61 5.20 85.22 0.44 2.05 15 3 Si 0.99 38.39 29.58 68.60 2.03 40.42 15 4 H -0.26 -9.71 7.11 99.48 0.71 -9.01 15 5 H -0.26 -9.86 7.11 99.48 0.71 -9.15 15 6 H -0.27 -9.84 7.11 99.48 0.71 -9.14 15 7 C -0.49 -26.98 9.04 23.37 0.21 -26.77 15 8 H 0.08 4.10 7.88 -2.91 -0.02 4.08 15 9 C 0.08 4.36 5.57 -21.27 -0.12 4.25 15 10 C -0.18 -10.10 8.62 22.47 0.19 -9.90 15 11 C -0.08 -4.21 9.90 22.15 0.22 -3.99 15 12 C -0.08 -3.56 5.24 38.67 0.20 -3.36 15 13 N -0.45 -17.04 6.42 -724.76 -4.65 -21.69 15 14 C -0.01 -0.36 7.48 83.58 0.63 0.26 15 15 C -0.12 -2.91 8.47 30.94 0.26 -2.64 15 16 C 0.00 -0.15 7.53 83.58 0.63 0.48 15 17 C -0.11 -5.01 7.78 22.15 0.17 -4.84 15 18 C -0.23 -11.61 9.74 22.47 0.22 -11.39 15 19 H 0.29 13.82 8.30 -92.71 -0.77 13.05 15 20 H 0.11 6.01 6.14 -2.91 -0.02 5.99 15 21 H 0.10 4.75 8.06 -2.91 -0.02 4.73 15 22 H 0.07 2.20 5.59 -2.39 -0.01 2.18 15 23 H 0.08 2.37 8.14 -2.38 -0.02 2.35 15 24 H 0.10 1.78 8.14 -2.39 -0.02 1.76 15 25 H 0.10 2.13 8.14 -2.39 -0.02 2.11 15 26 H 0.08 2.36 8.14 -2.39 -0.02 2.34 15 27 H 0.06 1.97 6.87 -2.38 -0.02 1.95 15 28 H 0.12 4.55 6.00 -2.91 -0.02 4.54 15 29 H 0.10 4.73 8.06 -2.91 -0.02 4.71 15 Total: -1.00 -60.25 242.21 1.81 -58.44 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: 1.14 Total: 22.50 kcal Atomic # 6 Polarization: -58.91 SS G_CDS: 3.06 Total: -55.85 kcal Atomic # 7 Polarization: -61.10 SS G_CDS: -4.41 Total: -65.51 kcal Atomic # 14 Polarization: 38.39 SS G_CDS: 2.03 Total: 40.42 kcal Total: -60.25 1.81 -58.44 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687715098.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.419 kcal (2) G-P(sol) polarization free energy of solvation -60.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds