Wall clock time and date at job start Mon Mar 30 2020 02:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86793 * 119.99611 * 2 1 4 4 H 1.48491 * 109.47611 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47247 * 120.00625 * 3 2 1 6 6 H 1.48504 * 109.47389 * 239.99953 * 3 2 1 7 7 C 1.38809 * 119.99854 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99785 * 201.10444 * 7 2 1 9 9 N 1.36931 * 120.00423 * 21.10572 * 7 2 1 10 10 C 1.46501 * 120.00314 * 36.04028 * 9 7 2 11 11 C 1.52999 * 109.46889 * 89.99990 * 10 9 7 12 12 H 1.09005 * 109.47088 * 60.00373 * 11 10 9 13 13 O 1.42905 * 109.47429 * 300.00478 * 11 10 9 14 14 C 1.53001 * 109.47075 * 180.02562 * 11 10 9 15 15 F 1.39900 * 109.47197 * 185.00085 * 14 11 10 16 16 C 1.46505 * 119.99984 * 216.04649 * 9 7 2 17 17 C 1.52994 * 117.49722 * 13.80402 * 16 9 7 18 18 C 1.53003 * 117.49664 * 305.14456 * 16 9 7 19 19 H 0.96999 * 120.00099 * 354.58224 * 1 2 3 20 20 H 1.08992 * 109.47613 * 210.00249 * 10 9 7 21 21 H 1.09002 * 109.47007 * 330.00804 * 10 9 7 22 22 H 0.96704 * 113.99866 * 300.00095 * 13 11 10 23 23 H 1.08994 * 109.46953 * 305.00257 * 14 11 10 24 24 H 1.09008 * 109.46997 * 65.00232 * 14 11 10 25 25 H 1.08997 * 115.54918 * 159.48164 * 16 9 7 26 26 H 1.08995 * 117.50178 * 0.02562 * 17 16 9 27 27 H 1.09007 * 117.49403 * 145.02296 * 17 16 9 28 28 H 1.08999 * 117.50007 * 214.98135 * 18 16 9 29 29 H 1.08997 * 117.49884 * 359.97438 * 18 16 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2852 2.7464 0.0006 5 1 3.1040 1.6964 1.2124 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0360 -1.2336 0.3362 9 7 1.3946 -2.3481 -0.4280 10 6 0.4393 -2.2963 -1.5376 11 6 1.1809 -2.5064 -2.8592 12 1 1.6734 -3.4788 -2.8489 13 8 2.1597 -1.4784 -3.0249 14 6 0.1834 -2.4516 -4.0180 15 9 0.8413 -2.7564 -5.2145 16 6 1.6910 -3.6260 0.2242 17 6 2.4310 -3.5811 1.5625 18 6 3.1572 -4.0562 0.3016 19 1 -0.4850 0.8363 0.0793 20 1 -0.3073 -3.0803 -1.4112 21 1 -0.0531 -1.3239 -1.5479 22 1 1.7919 -0.5843 -3.0431 23 1 -0.6129 -3.1759 -3.8465 24 1 -0.2436 -1.4507 -4.0829 25 1 0.9437 -4.4077 0.0882 26 1 2.6970 -2.6008 1.9579 27 1 2.1707 -4.3336 2.3070 28 1 3.3745 -5.1210 0.2169 29 1 3.9012 -3.3888 -0.1332 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706767917.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:53 Heat of formation + Delta-G solvation = -76.543236 kcal Electronic energy + Delta-G solvation = -13835.660609 eV Core-core repulsion = 11287.931120 eV Total energy + Delta-G solvation = -2547.729489 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 203.106 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.51997 -39.19257 -37.57755 -35.03420 -32.81080 -30.89920 -27.21752 -25.16447 -22.95436 -22.62128 -21.62413 -18.61117 -17.64736 -17.21626 -17.00964 -16.52890 -16.15821 -15.75352 -15.55657 -14.93506 -14.40220 -13.64796 -13.59183 -12.99968 -12.68265 -12.66368 -12.31379 -12.17041 -11.94288 -11.87769 -11.71730 -11.41391 -10.96459 -10.64482 -10.40348 -8.38840 -7.81469 -5.37261 1.46124 1.50139 1.57117 2.49920 3.15786 3.24763 3.50063 3.68112 3.92362 4.06082 4.07091 4.30278 4.46727 4.50336 4.58963 4.73754 4.90468 4.95020 5.04689 5.14971 5.36023 5.54662 5.66100 5.75599 6.49451 6.89925 7.18969 7.86362 8.36209 9.15251 Molecular weight = 203.11amu Principal moments of inertia in cm(-1) A = 0.023118 B = 0.016013 C = 0.011088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.897061 B = 1748.151125 C = 2524.677334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.028 4.028 3 Si 0.949 3.051 4 H -0.290 1.290 5 H -0.286 1.286 6 H -0.278 1.278 7 C -0.237 4.237 8 H 0.041 0.959 9 N -0.560 5.560 10 C 0.118 3.882 11 C 0.064 3.936 12 H 0.083 0.917 13 O -0.562 6.562 14 C 0.035 3.965 15 F -0.232 7.232 16 C 0.102 3.898 17 C -0.194 4.194 18 C -0.210 4.210 19 H 0.254 0.746 20 H 0.052 0.948 21 H 0.086 0.914 22 H 0.371 0.629 23 H 0.106 0.894 24 H 0.085 0.915 25 H 0.111 0.889 26 H 0.069 0.931 27 H 0.104 0.896 28 H 0.105 0.895 29 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.954 -5.022 -3.794 6.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.225 4.225 3 Si 0.778 3.222 4 H -0.216 1.216 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.368 4.368 8 H 0.059 0.941 9 N -0.276 5.276 10 C -0.008 4.008 11 C 0.002 3.998 12 H 0.101 0.899 13 O -0.367 6.367 14 C -0.021 4.021 15 F -0.214 7.214 16 C -0.007 4.007 17 C -0.233 4.233 18 C -0.250 4.250 19 H 0.064 0.936 20 H 0.071 0.929 21 H 0.103 0.897 22 H 0.218 0.782 23 H 0.124 0.876 24 H 0.103 0.897 25 H 0.129 0.871 26 H 0.088 0.912 27 H 0.122 0.878 28 H 0.123 0.877 29 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.684 -5.374 -3.896 6.673 hybrid contribution 0.221 1.460 0.184 1.488 sum -0.463 -3.914 -3.712 5.414 Atomic orbital electron populations 1.69943 1.06183 1.26344 1.53910 1.25542 0.95657 1.00461 1.00796 0.85636 0.78002 0.80332 0.78188 1.21627 1.21283 1.20424 1.18812 0.93487 0.86016 1.38442 0.94111 1.43377 1.48936 1.02219 1.33084 1.21564 0.91023 1.03246 0.85006 1.23235 0.90287 0.91649 0.94641 0.89855 1.86507 1.36613 1.17839 1.95722 1.22851 0.95368 1.03934 0.79932 1.92708 1.84033 1.95110 1.49513 1.21466 0.92733 0.90075 0.96394 1.23074 1.06774 1.01628 0.91843 1.23307 0.98480 1.00432 1.02826 0.93622 0.92941 0.89665 0.78199 0.87585 0.89700 0.87098 0.91236 0.87767 0.87671 0.92034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.60 11.33 21.65 0.25 -49.36 15 2 C -0.03 -1.47 4.98 84.86 0.42 -1.05 15 3 Si 0.95 43.29 29.61 68.60 2.03 45.32 15 4 H -0.29 -13.10 7.11 99.48 0.71 -12.39 15 5 H -0.29 -13.16 7.11 99.48 0.71 -12.45 15 6 H -0.28 -12.54 7.11 99.48 0.71 -11.83 15 7 C -0.24 -12.47 7.47 84.03 0.63 -11.85 15 8 H 0.04 2.28 7.15 -2.91 -0.02 2.26 15 9 N -0.56 -26.46 2.74 -678.04 -1.86 -28.32 15 10 C 0.12 4.96 5.05 86.38 0.44 5.39 15 11 C 0.06 2.38 3.60 30.59 0.11 2.49 15 12 H 0.08 3.20 8.14 -2.38 -0.02 3.18 15 13 O -0.56 -24.05 12.60 -148.98 -1.88 -25.92 15 14 C 0.03 1.04 7.18 71.98 0.52 1.56 15 15 F -0.23 -7.88 17.35 44.97 0.78 -7.10 15 16 C 0.10 4.16 6.61 44.99 0.30 4.46 15 17 C -0.19 -7.54 9.80 30.62 0.30 -7.24 15 18 C -0.21 -7.85 10.09 30.62 0.31 -7.54 15 19 H 0.25 13.38 8.32 -92.71 -0.77 12.61 15 20 H 0.05 1.98 8.04 -2.39 -0.02 1.96 15 21 H 0.09 4.02 5.39 -2.39 -0.01 4.01 15 22 H 0.37 14.84 9.05 -74.05 -0.67 14.17 15 23 H 0.11 2.55 8.14 -2.39 -0.02 2.53 15 24 H 0.08 2.37 8.14 -2.38 -0.02 2.35 15 25 H 0.11 3.96 8.10 -2.39 -0.02 3.94 15 26 H 0.07 3.10 6.90 -2.39 -0.02 3.09 15 27 H 0.10 3.37 8.14 -2.38 -0.02 3.35 15 28 H 0.11 3.23 8.14 -2.39 -0.02 3.21 15 29 H 0.06 2.61 8.03 -2.39 -0.02 2.59 15 Total: -1.00 -59.40 251.42 2.81 -56.59 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: 0.47 Total: 22.57 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: 3.02 Total: -13.78 kcal Atomic # 7 Polarization: -76.06 SS G_CDS: -1.62 Total: -77.68 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -1.88 Total: -25.92 kcal Atomic # 9 Polarization: -7.88 SS G_CDS: 0.78 Total: -7.10 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -59.40 2.81 -56.59 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706767917.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.957 kcal (2) G-P(sol) polarization free energy of solvation -59.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds