Wall clock time and date at job start Mon Mar 30 2020 01:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47097 * 2 1 4 4 C 1.50699 * 109.47216 * 240.00410 * 2 1 3 5 5 H 1.08000 * 120.00130 * 240.00276 * 4 2 1 6 6 C 1.37875 * 120.00220 * 59.99521 * 4 2 1 7 7 N 1.31518 * 119.99957 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 120.00316 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46681 * 89.99795 * 8 6 4 10 10 H 1.48497 * 109.47150 * 210.00074 * 8 6 4 11 11 H 1.48496 * 109.47009 * 330.00433 * 8 6 4 12 12 C 1.52992 * 109.47278 * 119.99816 * 2 1 3 13 13 C 1.52997 * 109.47482 * 295.00291 * 12 2 1 14 14 C 1.50701 * 109.47212 * 179.97438 * 13 12 2 15 15 C 1.38233 * 120.00099 * 269.72808 * 14 13 12 16 16 C 1.38239 * 119.99655 * 179.76882 * 15 14 13 17 17 C 1.38230 * 120.00228 * 0.50243 * 16 15 14 18 18 C 1.38238 * 119.99995 * 359.75228 * 17 16 15 19 19 C 1.38238 * 120.00072 * 359.97438 * 18 17 16 20 20 H 1.08998 * 109.46891 * 299.99978 * 1 2 3 21 21 H 1.09004 * 109.47334 * 59.99953 * 1 2 3 22 22 H 1.09000 * 109.46593 * 179.97438 * 1 2 3 23 23 H 0.96998 * 119.99888 * 180.02562 * 7 6 4 24 24 H 1.09002 * 109.47103 * 175.00044 * 12 2 1 25 25 H 1.08998 * 109.46862 * 55.00856 * 12 2 1 26 26 H 1.09002 * 109.47153 * 59.99783 * 13 12 2 27 27 H 1.09001 * 109.46832 * 299.99974 * 13 12 2 28 28 H 1.08003 * 119.99927 * 359.97438 * 15 14 13 29 29 H 1.08000 * 119.99431 * 180.23215 * 16 15 14 30 30 H 1.07997 * 120.00220 * 179.73036 * 17 16 15 31 31 H 1.08002 * 119.99952 * 179.97438 * 18 17 16 32 32 H 1.07991 * 120.00062 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3225 -1.1193 -4.0081 9 1 1.3449 -2.1615 -4.4124 10 1 2.4872 -0.1399 -5.1121 11 1 3.6309 -1.7563 -3.7121 12 6 2.0400 -0.7212 1.2492 13 6 1.6353 0.0689 2.4953 14 6 2.1371 -0.6418 3.7258 15 6 1.3420 -1.5824 4.3533 16 6 1.8043 -2.2378 5.4792 17 6 3.0576 -1.9451 5.9836 18 6 3.8507 -1.0007 5.3591 19 6 3.3907 -0.3493 4.2299 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3632 -1.0277 -0.0005 23 1 0.7088 1.1614 -3.4844 24 1 3.1264 -0.7994 1.2055 25 1 1.6055 -1.7197 1.2950 26 1 0.5489 0.1471 2.5390 27 1 2.0699 1.0675 2.4493 28 1 0.3608 -1.8076 3.9620 29 1 1.1845 -2.9753 5.9673 30 1 3.4170 -2.4539 6.8658 31 1 4.8297 -0.7717 5.7534 32 1 4.0101 0.3887 3.7422 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006020673.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:03 Heat of formation + Delta-G solvation = -17.655060 kcal Electronic energy + Delta-G solvation = -12530.057593 eV Core-core repulsion = 10453.765344 eV Total energy + Delta-G solvation = -2076.292249 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 204.121 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.14364 -37.31460 -34.53618 -32.37251 -31.70203 -28.80717 -27.29788 -24.97462 -23.37510 -22.04450 -20.87388 -18.36897 -17.48269 -16.63701 -16.23550 -15.93771 -15.12358 -14.81927 -14.38937 -14.16749 -13.77703 -13.60726 -13.37884 -12.83664 -12.70981 -12.37985 -12.25512 -12.13063 -11.94716 -11.79711 -11.34317 -11.01574 -10.78172 -10.42494 -9.75768 -9.47848 -8.07858 -6.22332 0.53479 0.56251 1.40904 1.41156 1.51805 2.43619 2.95612 3.18858 3.97579 4.01536 4.23479 4.35084 4.36008 4.57099 4.71494 4.71828 4.76462 4.93287 4.99565 5.12490 5.22235 5.26406 5.32983 5.36209 5.50793 5.62175 5.65570 5.67085 5.84981 6.00138 6.17143 6.22506 6.40536 6.89999 7.46030 8.96536 Molecular weight = 204.12amu Principal moments of inertia in cm(-1) A = 0.057638 B = 0.006401 C = 0.006186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.675741 B = 4373.355771 C = 4524.927555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.036 3.964 3 H -0.004 1.004 4 C -0.535 4.535 5 H 0.049 0.951 6 C 0.010 3.990 7 N -0.919 5.919 8 Si 0.954 3.046 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.270 1.270 12 C -0.083 4.083 13 C -0.076 4.076 14 C -0.088 4.088 15 C -0.135 4.135 16 C -0.123 4.123 17 C -0.135 4.135 18 C -0.124 4.124 19 C -0.137 4.137 20 H 0.035 0.965 21 H 0.050 0.950 22 H 0.024 0.976 23 H 0.260 0.740 24 H 0.039 0.961 25 H 0.044 0.956 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.123 0.877 29 H 0.143 0.857 30 H 0.147 0.853 31 H 0.142 0.858 32 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.646 -4.223 14.755 15.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.017 3.983 3 H 0.015 0.985 4 C -0.573 4.573 5 H 0.067 0.933 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.779 3.221 9 H -0.201 1.201 10 H -0.208 1.208 11 H -0.194 1.194 12 C -0.121 4.121 13 C -0.113 4.113 14 C -0.088 4.088 15 C -0.153 4.153 16 C -0.141 4.141 17 C -0.152 4.152 18 C -0.141 4.141 19 C -0.155 4.155 20 H 0.053 0.947 21 H 0.069 0.931 22 H 0.043 0.957 23 H 0.069 0.931 24 H 0.058 0.942 25 H 0.063 0.937 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.141 0.859 29 H 0.161 0.839 30 H 0.165 0.835 31 H 0.160 0.840 32 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.572 -4.108 14.620 15.402 hybrid contribution 0.157 -0.151 -1.237 1.256 sum 2.729 -4.258 13.383 14.307 Atomic orbital electron populations 1.21674 0.98339 0.98666 0.99751 1.18685 0.93121 0.94331 0.92118 0.98549 1.21604 1.31057 1.12374 0.92262 0.93274 1.25760 0.95358 0.95734 1.01935 1.70028 1.37824 1.24137 1.23844 0.85627 0.78884 0.78402 0.79179 1.20052 1.20755 1.19413 1.21404 0.98996 0.98162 0.93514 1.20642 1.01032 0.98193 0.91470 1.20130 0.95153 0.97315 0.96173 1.21271 1.00310 0.96979 0.96782 1.21440 0.96870 0.99770 0.96021 1.21468 0.94492 0.98343 1.00930 1.21436 1.00691 0.96594 0.95410 1.21273 0.95653 1.01146 0.97433 0.94651 0.93067 0.95703 0.93053 0.94218 0.93729 0.91057 0.91852 0.85908 0.83921 0.83532 0.83989 0.86086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.25 8.73 71.98 0.63 -5.62 16 2 C 0.04 1.85 2.30 -11.54 -0.03 1.83 16 3 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 4 C -0.53 -30.47 8.56 25.60 0.22 -30.25 16 5 H 0.05 2.76 7.74 -2.91 -0.02 2.74 16 6 C 0.01 0.59 5.30 84.65 0.45 1.04 16 7 N -0.92 -54.31 11.32 21.45 0.24 -54.07 16 8 Si 0.95 44.51 29.54 68.60 2.03 46.54 16 9 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 11 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 12 C -0.08 -3.56 4.60 30.59 0.14 -3.41 16 13 C -0.08 -2.71 5.10 29.85 0.15 -2.56 16 14 C -0.09 -2.75 5.13 -19.86 -0.10 -2.85 16 15 C -0.14 -3.79 9.70 22.27 0.22 -3.58 16 16 C -0.12 -2.83 10.05 22.27 0.22 -2.60 16 17 C -0.13 -2.84 10.05 22.27 0.22 -2.62 16 18 C -0.12 -2.86 10.05 22.27 0.22 -2.64 16 19 C -0.14 -3.89 9.70 22.27 0.22 -3.67 16 20 H 0.03 1.51 6.56 -2.39 -0.02 1.49 16 21 H 0.05 2.82 6.07 -2.38 -0.01 2.80 16 22 H 0.02 1.16 8.14 -2.39 -0.02 1.15 16 23 H 0.26 14.60 8.31 -92.71 -0.77 13.82 16 24 H 0.04 1.71 8.14 -2.39 -0.02 1.70 16 25 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.07 2.48 6.51 -2.39 -0.02 2.46 16 27 H 0.06 2.24 8.09 -2.39 -0.02 2.22 16 28 H 0.12 3.26 8.06 -2.91 -0.02 3.23 16 29 H 0.14 2.46 8.06 -2.91 -0.02 2.43 16 30 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 31 H 0.14 2.49 8.06 -2.91 -0.02 2.46 16 32 H 0.12 3.28 8.06 -2.92 -0.02 3.26 16 Total: -1.00 -62.27 267.59 5.90 -56.37 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: 1.07 Total: 8.11 kcal Atomic # 6 Polarization: -59.51 SS G_CDS: 2.56 Total: -56.94 kcal Atomic # 7 Polarization: -54.31 SS G_CDS: 0.24 Total: -54.07 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -62.27 5.90 -56.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006020673.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.714 kcal (2) G-P(sol) polarization free energy of solvation -62.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds