Wall clock time and date at job start Mon Mar 30 2020 01:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47263 * 2 1 4 4 C 1.52996 * 109.46866 * 239.99479 * 2 1 3 5 5 C 1.50709 * 109.47032 * 119.99797 * 2 1 3 6 6 C 1.38657 * 119.87337 * 359.97438 * 5 2 1 7 7 C 1.38616 * 120.49872 * 180.02562 * 6 5 2 8 8 C 1.37641 * 120.24601 * 0.02562 * 7 6 5 9 9 C 1.40695 * 119.74915 * 359.97438 * 8 7 6 10 10 C 1.41393 * 120.24694 * 180.02562 * 9 8 7 11 11 H 1.08000 * 119.99672 * 155.20204 * 10 9 8 12 12 C 1.39949 * 119.99739 * 335.20295 * 10 9 8 13 13 N 1.30823 * 120.00094 * 342.29831 * 12 10 9 14 14 Si 1.86801 * 119.99670 * 162.30263 * 12 10 9 15 15 H 1.48498 * 109.47523 * 59.99711 * 14 12 10 16 16 H 1.48503 * 109.46593 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47194 * 299.99426 * 14 12 10 18 18 C 1.37591 * 119.87250 * 180.02562 * 5 2 1 19 19 H 1.09009 * 109.47123 * 300.00319 * 1 2 3 20 20 H 1.08996 * 109.47220 * 60.00479 * 1 2 3 21 21 H 1.09002 * 109.47066 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47320 * 180.02562 * 3 2 1 23 23 H 1.09009 * 109.46791 * 299.99625 * 3 2 1 24 24 H 1.08995 * 109.47325 * 59.99766 * 3 2 1 25 25 H 1.09002 * 109.47197 * 299.99820 * 4 2 1 26 26 H 1.09000 * 109.47490 * 60.00398 * 4 2 1 27 27 H 1.09002 * 109.47129 * 180.02562 * 4 2 1 28 28 H 1.07994 * 119.75166 * 359.74437 * 6 5 2 29 29 H 1.07994 * 119.87549 * 179.97438 * 7 6 5 30 30 H 1.08004 * 120.12276 * 179.97438 * 8 7 6 31 31 H 0.96995 * 120.00038 * 180.02562 * 13 12 10 32 32 H 1.08003 * 120.13296 * 359.95265 * 18 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 2.0324 -0.7104 1.2306 6 6 1.1290 -1.2359 2.1418 7 6 1.5767 -1.8913 3.2782 8 6 2.9260 -2.0268 3.5141 9 6 3.8518 -1.4976 2.5963 10 6 5.2402 -1.6314 2.8280 11 1 5.9310 -1.6057 1.9982 12 6 5.7192 -1.7969 4.1325 13 7 4.9599 -1.4884 5.1522 14 14 7.4427 -2.4584 4.4176 15 1 8.4326 -1.5503 3.7845 16 1 7.7071 -2.5381 5.8767 17 1 7.5588 -3.8121 3.8183 18 6 3.3857 -0.8342 1.4460 19 1 -0.3634 0.5139 0.8900 20 1 -0.3633 0.5137 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 3.1300 1.4424 -0.0005 23 1 1.6767 1.9562 -0.8901 24 1 1.6767 1.9563 0.8899 25 1 1.6766 -1.7490 -1.2491 26 1 1.6767 -0.2076 -2.1392 27 1 3.1300 -0.7218 -1.2490 28 1 0.0686 -1.1297 1.9672 29 1 0.8643 -2.2963 3.9815 30 1 3.2726 -2.5375 4.4004 31 1 5.2920 -1.6028 6.0563 32 1 4.0876 -0.4241 0.7349 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000033607977.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:56 Heat of formation + Delta-G solvation = -20.769620 kcal Electronic energy + Delta-G solvation = -13025.032597 eV Core-core repulsion = 10948.605290 eV Total energy + Delta-G solvation = -2076.427306 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 204.121 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.10489 -37.24467 -35.09279 -31.81791 -30.19886 -28.49422 -28.01450 -26.71266 -23.32845 -22.28380 -20.30852 -18.42144 -17.35488 -16.60026 -15.62072 -15.41243 -14.98555 -14.85474 -14.39107 -14.05225 -13.54663 -13.22995 -12.91922 -12.85837 -12.74052 -12.51850 -12.43100 -12.16003 -12.11006 -11.75246 -11.68206 -11.10931 -11.01306 -10.94186 -9.33590 -9.05481 -8.61693 -6.32807 1.02422 1.15805 1.36128 1.47679 1.54612 2.20491 2.75198 3.74018 3.96265 4.08811 4.28671 4.53416 4.65477 4.75093 4.82843 4.85618 4.97430 5.05497 5.08723 5.09022 5.10329 5.20931 5.27515 5.41061 5.48049 5.55875 5.64178 5.77988 6.08925 6.15209 6.27745 6.44412 6.74185 6.97312 7.09142 8.35564 Molecular weight = 204.12amu Principal moments of inertia in cm(-1) A = 0.049199 B = 0.009027 C = 0.008198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.982561 B = 3101.198897 C = 3414.683332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.032 4.032 3 C -0.130 4.130 4 C -0.129 4.129 5 C -0.049 4.049 6 C -0.238 4.238 7 C -0.114 4.114 8 C -0.197 4.197 9 C 0.076 3.924 10 C -0.506 4.506 11 H 0.072 0.928 12 C 0.034 3.966 13 N -0.829 5.829 14 Si 0.981 3.019 15 H -0.259 1.259 16 H -0.267 1.267 17 H -0.261 1.261 18 C -0.229 4.229 19 H 0.051 0.949 20 H 0.074 0.926 21 H 0.054 0.946 22 H 0.041 0.959 23 H 0.078 0.922 24 H 0.043 0.957 25 H 0.047 0.953 26 H 0.077 0.923 27 H 0.042 0.958 28 H 0.122 0.878 29 H 0.106 0.894 30 H 0.096 0.904 31 H 0.286 0.714 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.109 1.799 -6.803 8.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.032 4.032 3 C -0.187 4.187 4 C -0.186 4.186 5 C -0.049 4.049 6 C -0.257 4.257 7 C -0.132 4.132 8 C -0.217 4.217 9 C 0.074 3.926 10 C -0.536 4.536 11 H 0.090 0.910 12 C -0.180 4.180 13 N -0.456 5.456 14 Si 0.801 3.199 15 H -0.184 1.184 16 H -0.191 1.191 17 H -0.186 1.186 18 C -0.249 4.249 19 H 0.070 0.930 20 H 0.093 0.907 21 H 0.073 0.927 22 H 0.060 0.940 23 H 0.097 0.903 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.096 0.904 27 H 0.061 0.939 28 H 0.140 0.860 29 H 0.124 0.876 30 H 0.114 0.886 31 H 0.097 0.903 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.116 1.828 -6.545 7.945 hybrid contribution 0.924 -0.354 0.697 1.210 sum -3.192 1.474 -5.849 6.824 Atomic orbital electron populations 1.21842 0.93201 1.01798 1.01961 1.19546 0.96404 0.94897 0.92306 1.21805 1.00396 0.94757 1.01748 1.21797 1.00429 0.99930 0.96445 1.19713 0.92620 0.96904 0.95649 1.20793 0.98707 1.08938 0.97267 1.20994 0.95018 0.99746 0.97472 1.21260 0.92833 1.05789 1.01785 1.17977 0.93938 0.88873 0.91763 1.19765 0.92957 1.47089 0.93749 0.90997 1.26752 1.03941 0.92306 0.95016 1.69887 1.39885 1.35311 1.00476 0.85284 0.76773 0.79671 0.78143 1.18351 1.19110 1.18576 1.20912 0.94802 1.08062 1.01075 0.92994 0.90737 0.92692 0.93983 0.90302 0.93786 0.93395 0.90368 0.93895 0.86029 0.87578 0.88601 0.90304 0.89144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.59 7.13 71.98 0.51 -3.07 16 2 C -0.03 -1.04 0.85 -52.93 -0.05 -1.09 16 3 C -0.13 -4.00 8.28 71.98 0.60 -3.41 16 4 C -0.13 -3.84 8.28 71.98 0.60 -3.24 16 5 C -0.05 -2.13 4.76 -19.91 -0.09 -2.23 16 6 C -0.24 -10.50 8.99 22.46 0.20 -10.30 16 7 C -0.11 -5.53 10.02 22.22 0.22 -5.31 16 8 C -0.20 -10.91 8.70 22.73 0.20 -10.72 16 9 C 0.08 4.32 5.57 -21.29 -0.12 4.21 16 10 C -0.51 -28.53 9.05 23.46 0.21 -28.32 16 11 H 0.07 3.92 7.91 -2.91 -0.02 3.89 16 12 C 0.03 1.79 5.14 85.26 0.44 2.23 16 13 N -0.83 -45.27 10.97 21.83 0.24 -45.03 16 14 Si 0.98 39.67 29.59 68.60 2.03 41.70 16 15 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 16 H -0.27 -10.15 7.11 99.48 0.71 -9.45 16 17 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 18 C -0.23 -11.55 8.44 22.73 0.19 -11.36 16 19 H 0.05 1.45 7.50 -2.38 -0.02 1.43 16 20 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 21 H 0.05 1.50 7.51 -2.39 -0.02 1.49 16 22 H 0.04 1.40 7.38 -2.39 -0.02 1.38 16 23 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 24 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.04 1.38 7.38 -2.39 -0.02 1.36 16 28 H 0.12 4.57 5.86 -2.91 -0.02 4.56 16 29 H 0.11 4.55 8.06 -2.91 -0.02 4.53 16 30 H 0.10 5.56 6.18 -2.91 -0.02 5.54 16 31 H 0.29 14.15 8.30 -92.71 -0.77 13.38 16 32 H 0.09 4.41 7.08 -2.91 -0.02 4.39 16 Total: -1.00 -60.66 260.95 6.26 -54.40 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: 1.08 Total: 21.54 kcal Atomic # 6 Polarization: -75.52 SS G_CDS: 2.91 Total: -72.61 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: 0.24 Total: -45.03 kcal Atomic # 14 Polarization: 39.67 SS G_CDS: 2.03 Total: 41.70 kcal Total: -60.66 6.26 -54.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033607977.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.631 kcal (2) G-P(sol) polarization free energy of solvation -60.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds