Wall clock time and date at job start Mon Mar 30 2020 02:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00577 * 2 1 4 4 H 1.48498 * 109.47299 * 240.00254 * 3 2 1 5 5 H 1.48501 * 109.46754 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47129 * 120.00023 * 3 2 1 7 7 C 1.37881 * 119.99541 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00208 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99942 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.46909 * 179.97438 * 9 7 2 11 11 C 1.47068 * 126.29884 * 85.00553 * 10 9 7 12 12 C 1.54066 * 110.04916 * 208.96145 * 11 10 9 13 13 C 1.55602 * 104.29476 * 314.83004 * 12 11 10 14 14 S 1.66842 * 126.22232 * 264.93402 * 10 9 7 15 15 O 1.42107 * 105.14140 * 61.13608 * 14 10 9 16 16 O 1.42098 * 105.27888 * 291.49366 * 14 10 9 17 17 H 0.97006 * 119.99793 * 0.02562 * 1 2 3 18 18 H 1.08999 * 109.46956 * 60.00359 * 9 7 2 19 19 H 1.08996 * 109.47713 * 300.00020 * 9 7 2 20 20 H 1.09002 * 109.35873 * 88.81413 * 11 10 9 21 21 H 1.09000 * 109.35301 * 329.10530 * 11 10 9 22 22 H 1.08992 * 110.46854 * 73.53536 * 12 11 10 23 23 H 1.09002 * 110.46579 * 196.12669 * 12 11 10 24 24 H 1.08998 * 111.16728 * 155.79272 * 13 12 11 25 25 H 1.09005 * 111.16478 * 280.05459 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1943 -0.0001 9 6 1.2508 -2.4992 -0.0005 10 7 2.2028 -3.6128 -0.0018 11 6 2.8478 -4.2080 1.1782 12 6 4.2231 -4.7860 0.7932 13 6 3.9582 -5.5577 -0.5318 14 16 2.7520 -4.4388 -1.3433 15 8 3.4100 -3.4612 -2.1375 16 8 1.6263 -5.1587 -1.8266 17 1 -0.4850 0.8401 -0.0004 18 1 0.6239 -2.5566 -0.8903 19 1 0.6245 -2.5571 0.8896 20 1 2.2175 -5.0061 1.5705 21 1 2.9789 -3.4425 1.9430 22 1 4.9417 -3.9830 0.6294 23 1 4.5804 -5.4667 1.5659 24 1 4.8695 -5.6494 -1.1228 25 1 3.5182 -6.5356 -0.3364 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036809254.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:49 Heat of formation + Delta-G solvation = -65.683781 kcal Electronic energy + Delta-G solvation = -11985.855811 eV Core-core repulsion = 9705.832732 eV Total energy + Delta-G solvation = -2280.023079 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 205.056 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -36.72573 -36.33912 -35.20277 -33.39187 -31.61233 -27.27212 -25.50165 -22.72084 -21.45824 -18.20840 -16.75720 -16.44905 -16.01293 -15.14695 -14.56222 -14.05320 -13.86089 -13.37912 -12.80692 -12.31668 -12.24583 -11.45994 -11.33553 -11.30627 -11.16187 -10.98134 -10.74948 -10.36805 -10.12804 -9.91138 -9.68212 -8.42230 -7.94593 -6.03494 -4.08311 0.78827 3.27768 3.34897 3.38783 3.44152 4.16017 4.39137 4.47290 4.59494 4.90925 5.24951 5.29271 5.44166 5.59278 5.73627 5.97458 6.10848 6.36707 7.29345 7.46189 7.66466 7.95808 8.24312 8.97207 9.57121 11.04438 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.048813 B = 0.011271 C = 0.010893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.484990 B = 2483.678496 C = 2569.949002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.059 3.941 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.533 4.533 8 H 0.065 0.935 9 C 0.286 3.714 10 N -0.974 5.974 11 C 0.084 3.916 12 C -0.124 4.124 13 C -0.611 4.611 14 S 2.570 3.430 15 O -0.954 6.954 16 O -0.973 6.973 17 H 0.264 0.736 18 H 0.035 0.965 19 H 0.038 0.962 20 H 0.061 0.939 21 H 0.093 0.907 22 H 0.091 0.909 23 H 0.099 0.901 24 H 0.131 0.869 25 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.634 -9.840 2.756 12.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.143 4.143 3 Si 0.727 3.273 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.573 4.573 8 H 0.083 0.917 9 C 0.165 3.835 10 N -0.818 5.818 11 C -0.044 4.044 12 C -0.164 4.164 13 C -0.740 4.740 14 S 2.664 3.336 15 O -0.943 6.943 16 O -0.963 6.963 17 H 0.074 0.926 18 H 0.053 0.947 19 H 0.056 0.944 20 H 0.079 0.921 21 H 0.111 0.889 22 H 0.110 0.890 23 H 0.118 0.882 24 H 0.149 0.851 25 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.101 -9.521 1.776 12.009 hybrid contribution 0.812 0.685 0.616 1.228 sum 7.914 -8.835 2.392 12.100 Atomic orbital electron populations 1.69927 1.06018 1.27246 1.50516 1.24984 0.94905 0.99352 0.95091 0.86542 0.79515 0.82528 0.78753 1.19998 1.21243 1.20234 1.21640 0.93987 0.90717 1.50912 0.91714 1.18868 0.85680 0.80677 0.98247 1.57308 1.58309 1.47604 1.18599 1.21855 0.91457 0.98640 0.92443 1.22637 0.98671 0.99743 0.95331 1.30910 1.17980 1.14197 1.10941 1.06368 0.76301 0.76070 0.74816 1.93594 1.76482 1.56145 1.68095 1.93554 1.48580 1.74708 1.79448 0.92598 0.94666 0.94416 0.92086 0.88884 0.89048 0.88238 0.85064 0.84916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.64 13.29 55.43 0.74 -25.90 15 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 15 3 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 15 4 H -0.27 -6.74 7.11 56.52 0.40 -6.34 15 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 15 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 7 C -0.53 -15.10 9.39 -34.44 -0.32 -15.43 15 8 H 0.06 1.81 7.81 -52.49 -0.41 1.40 15 9 C 0.29 7.44 6.10 -5.19 -0.03 7.41 15 10 N -0.97 -20.32 3.30 -114.62 -0.38 -20.69 15 11 C 0.08 1.27 6.83 -3.18 -0.02 1.25 15 12 C -0.12 -1.46 6.79 -24.79 -0.17 -1.63 15 13 C -0.61 -7.33 7.51 38.54 0.29 -7.04 15 14 S 2.57 48.86 6.16 -107.50 -0.66 48.20 15 15 O -0.95 -21.96 18.14 -57.43 -1.04 -23.00 15 16 O -0.97 -21.15 18.14 -57.43 -1.04 -22.19 15 17 H 0.26 7.41 8.31 -40.82 -0.34 7.07 15 18 H 0.04 1.00 8.14 -51.93 -0.42 0.57 15 19 H 0.04 0.99 8.14 -51.93 -0.42 0.57 15 20 H 0.06 0.80 8.14 -51.93 -0.42 0.38 15 21 H 0.09 1.44 8.14 -51.93 -0.42 1.02 15 22 H 0.09 1.09 8.14 -51.93 -0.42 0.67 15 23 H 0.10 0.84 8.14 -51.93 -0.42 0.41 15 24 H 0.13 1.29 8.14 -51.93 -0.42 0.86 15 25 H 0.13 1.29 8.14 -51.93 -0.42 0.87 15 LS Contribution 233.21 15.07 3.51 3.51 Total: -1.00 -34.94 233.21 -7.17 -42.12 By element: Atomic # 1 Polarization: -2.18 SS G_CDS: -2.93 Total: -5.11 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: -0.35 Total: -13.85 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: 0.36 Total: -46.60 kcal Atomic # 8 Polarization: -43.11 SS G_CDS: -2.08 Total: -45.19 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 16 Polarization: 48.86 SS G_CDS: -0.66 Total: 48.20 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -34.94 -7.17 -42.12 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036809254.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.567 kcal (2) G-P(sol) polarization free energy of solvation -34.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds