Wall clock time and date at job start Mon Mar 30 2020 02:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.50698 * 109.46898 * 310.05943 * 3 2 1 5 5 C 1.37648 * 120.10454 * 264.99850 * 4 3 2 6 6 C 1.38569 * 120.27572 * 179.72779 * 5 4 3 7 7 C 1.38888 * 120.47473 * 0.25368 * 6 5 4 8 8 F 1.35096 * 119.90047 * 180.02562 * 7 6 5 9 9 C 1.37815 * 120.19792 * 0.04659 * 7 6 5 10 10 C 1.40698 * 119.71959 * 359.97438 * 9 7 6 11 11 C 1.41406 * 120.23266 * 180.02562 * 10 9 7 12 12 H 1.07990 * 120.00140 * 153.95562 * 11 10 9 13 13 C 1.39942 * 119.99716 * 333.96261 * 11 10 9 14 14 N 1.30829 * 119.99805 * 343.76157 * 13 11 10 15 15 Si 1.86799 * 119.99857 * 163.76238 * 13 11 10 16 16 H 1.48507 * 109.46992 * 94.96322 * 15 13 11 17 17 H 1.48502 * 109.46980 * 214.95817 * 15 13 11 18 18 H 1.48488 * 109.47151 * 334.96120 * 15 13 11 19 19 H 1.08996 * 109.46899 * 190.05948 * 3 2 1 20 20 H 1.08999 * 109.46632 * 70.06001 * 3 2 1 21 21 H 1.07999 * 119.86290 * 0.02562 * 5 4 3 22 22 H 1.08000 * 119.76097 * 180.27363 * 6 5 4 23 23 H 1.07992 * 120.14297 * 179.97438 * 9 7 6 24 24 H 0.96998 * 119.99564 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1108 -0.9135 1.0875 5 6 3.4385 -0.4021 2.3227 6 6 3.8958 -1.2403 3.3269 7 6 4.0337 -2.6033 3.0984 8 9 4.4800 -3.4099 4.0860 9 6 3.7170 -3.1353 1.8672 10 6 3.2524 -2.2917 0.8414 11 6 2.9239 -2.8261 -0.4259 12 1 2.2048 -2.3221 -1.0545 13 6 3.5305 -4.0081 -0.8654 14 7 4.6117 -4.4475 -0.2741 15 14 2.7966 -4.9584 -2.2964 16 1 3.4750 -4.5592 -3.5557 17 1 2.9855 -6.4143 -2.0725 18 1 1.3462 -4.6573 -2.3985 19 1 2.9709 1.0127 0.1795 20 1 2.9715 -0.3497 -0.9661 21 1 3.3344 0.6562 2.5114 22 1 4.1463 -0.8308 4.2943 23 1 3.8250 -4.1951 1.6903 24 1 5.0324 -5.2666 -0.5790 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044368289.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:29 Heat of formation + Delta-G solvation = -30.978058 kcal Electronic energy + Delta-G solvation = -12359.124404 eV Core-core repulsion = 9957.535116 eV Total energy + Delta-G solvation = -2401.589288 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.060 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.54529 -39.64526 -37.28473 -35.58391 -33.16776 -31.55662 -28.45734 -26.94271 -23.23622 -22.07463 -19.45278 -18.25886 -17.79439 -16.81115 -16.46654 -16.27128 -16.15184 -15.04741 -14.75588 -14.40073 -14.00204 -13.79433 -13.57985 -13.34206 -12.83692 -12.72647 -12.34815 -12.21298 -12.06474 -11.66669 -11.31211 -11.06727 -9.44801 -9.16623 -8.68580 -6.44393 0.73392 0.95511 1.40380 1.47857 1.54121 2.00667 2.02164 2.17849 2.64515 3.33948 3.76903 3.84703 4.36849 4.54374 4.60194 4.79799 4.99301 5.12399 5.17394 5.34738 5.69006 5.77112 5.86914 6.01662 6.27090 6.58091 6.78971 6.85220 6.92747 8.25988 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.021872 B = 0.015757 C = 0.009862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.868698 B = 1776.508778 C = 2838.607301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C 0.247 3.753 3 C 0.042 3.958 4 C -0.216 4.216 5 C -0.044 4.044 6 C -0.279 4.279 7 C 0.089 3.911 8 F -0.171 7.171 9 C -0.230 4.230 10 C 0.115 3.885 11 C -0.474 4.474 12 H 0.090 0.910 13 C 0.040 3.960 14 N -0.814 5.814 15 Si 0.972 3.028 16 H -0.254 1.254 17 H -0.272 1.272 18 H -0.264 1.264 19 H 0.147 0.853 20 H 0.121 0.879 21 H 0.150 0.850 22 H 0.125 0.875 23 H 0.104 0.896 24 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.230 4.632 -1.563 5.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.193 5.193 2 C -0.069 4.069 3 C 0.002 3.998 4 C -0.219 4.219 5 C -0.062 4.062 6 C -0.299 4.299 7 C 0.070 3.930 8 F -0.150 7.150 9 C -0.250 4.250 10 C 0.112 3.888 11 C -0.503 4.503 12 H 0.108 0.892 13 C -0.177 4.177 14 N -0.439 5.439 15 Si 0.793 3.207 16 H -0.179 1.179 17 H -0.197 1.197 18 H -0.188 1.188 19 H 0.165 0.835 20 H 0.139 0.861 21 H 0.167 0.833 22 H 0.143 0.857 23 H 0.122 0.878 24 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.266 4.423 -1.547 4.693 hybrid contribution 0.441 -1.241 -0.096 1.320 sum 0.175 3.182 -1.644 3.586 Atomic orbital electron populations 1.81090 1.14773 1.11826 1.11568 1.29967 0.95815 0.90425 0.90654 1.18101 0.79066 1.02054 1.00540 1.19622 1.13091 0.92832 0.96318 1.20752 0.94908 0.99537 0.91039 1.20669 1.16226 0.91060 1.01949 1.18058 1.00414 0.89297 0.85209 1.91318 1.87630 1.74252 1.61764 1.21236 1.11270 1.00470 0.92044 1.17542 0.87972 0.91025 0.92245 1.19838 1.21906 1.07250 1.01277 0.89181 1.26712 0.93332 0.97342 1.00292 1.69865 1.14794 1.20488 1.38726 0.85326 0.79589 0.77598 0.78186 1.17853 1.19720 1.18848 0.83531 0.86084 0.83284 0.85669 0.87766 0.89913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -20.52 18.54 20.01 0.37 -20.15 14 2 C 0.25 8.64 15.04 89.44 1.34 9.99 14 3 C 0.04 1.23 5.20 28.04 0.15 1.38 14 4 C -0.22 -8.42 5.15 -19.40 -0.10 -8.52 14 5 C -0.04 -1.59 9.66 22.21 0.21 -1.38 14 6 C -0.28 -11.29 10.03 22.50 0.23 -11.06 14 7 C 0.09 4.22 7.29 22.33 0.16 4.39 14 8 F -0.17 -7.97 17.26 44.97 0.78 -7.19 14 9 C -0.23 -11.75 8.66 22.77 0.20 -11.55 14 10 C 0.12 5.50 5.56 -21.29 -0.12 5.38 14 11 C -0.47 -22.48 8.14 23.46 0.19 -22.28 14 12 H 0.09 4.03 6.65 -2.92 -0.02 4.01 14 13 C 0.04 1.87 5.16 85.26 0.44 2.31 14 14 N -0.81 -40.04 10.97 21.83 0.24 -39.80 14 15 Si 0.97 35.92 29.59 68.60 2.03 37.95 14 16 H -0.25 -8.82 7.11 99.48 0.71 -8.11 14 17 H -0.27 -9.92 7.11 99.48 0.71 -9.21 14 18 H -0.26 -9.92 7.11 99.48 0.71 -9.21 14 19 H 0.15 2.93 8.05 -2.39 -0.02 2.91 14 20 H 0.12 3.50 7.04 -2.39 -0.02 3.49 14 21 H 0.15 3.96 8.06 -2.91 -0.02 3.94 14 22 H 0.13 4.40 8.06 -2.91 -0.02 4.38 14 23 H 0.10 5.74 6.22 -2.91 -0.02 5.72 14 24 H 0.29 13.02 8.30 -92.71 -0.77 12.25 14 Total: -1.00 -57.73 229.92 7.35 -50.38 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: 1.23 Total: 10.16 kcal Atomic # 6 Polarization: -34.05 SS G_CDS: 2.70 Total: -31.35 kcal Atomic # 7 Polarization: -60.56 SS G_CDS: 0.61 Total: -59.95 kcal Atomic # 9 Polarization: -7.97 SS G_CDS: 0.78 Total: -7.19 kcal Atomic # 14 Polarization: 35.92 SS G_CDS: 2.03 Total: 37.95 kcal Total: -57.73 7.35 -50.38 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044368289.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.405 kcal (2) G-P(sol) polarization free energy of solvation -57.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds