Wall clock time and date at job start Mon Mar 30 2020 01:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50705 * 109.47212 * 2 1 4 4 C 1.37611 * 120.12584 * 258.40971 * 3 2 1 5 5 C 1.38641 * 120.24697 * 179.72155 * 4 3 2 6 6 C 1.38628 * 120.49967 * 0.25256 * 5 4 3 7 7 C 1.37619 * 120.25119 * 359.97438 * 6 5 4 8 8 C 1.50699 * 120.12673 * 180.02562 * 7 6 5 9 9 C 1.53002 * 109.46972 * 264.99658 * 8 7 6 10 10 C 1.40709 * 119.74448 * 0.02562 * 7 6 5 11 11 C 1.41392 * 120.24569 * 179.97438 * 10 7 6 12 12 H 1.07999 * 119.99990 * 50.65748 * 11 10 7 13 13 C 1.39944 * 120.00329 * 230.65438 * 11 10 7 14 14 N 1.30828 * 120.00394 * 199.97346 * 13 11 10 15 15 Si 1.86801 * 120.00057 * 19.96693 * 13 11 10 16 16 H 1.48502 * 109.47081 * 85.13198 * 15 13 11 17 17 H 1.48500 * 109.47389 * 205.13236 * 15 13 11 18 18 H 1.48498 * 109.47136 * 325.13243 * 15 13 11 19 19 H 1.09008 * 109.47320 * 304.86887 * 1 2 3 20 20 H 1.08999 * 109.47039 * 64.86636 * 1 2 3 21 21 H 1.08995 * 109.47165 * 184.86839 * 1 2 3 22 22 H 1.08994 * 109.47327 * 239.99975 * 2 1 3 23 23 H 1.09000 * 109.47177 * 119.99504 * 2 1 3 24 24 H 1.08004 * 119.87752 * 359.97438 * 4 3 2 25 25 H 1.08003 * 119.75000 * 180.23515 * 5 4 3 26 26 H 1.08007 * 119.87620 * 180.02562 * 6 5 4 27 27 H 1.09002 * 109.47688 * 24.99660 * 8 7 6 28 28 H 1.09002 * 109.47185 * 145.00233 * 8 7 6 29 29 H 1.08994 * 109.47488 * 180.02562 * 9 8 7 30 30 H 1.09005 * 109.47397 * 300.00627 * 9 8 7 31 31 H 1.09008 * 109.47128 * 60.00214 * 9 8 7 32 32 H 0.96996 * 120.00630 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.4881 1.9923 -1.1660 5 6 2.9454 3.3011 -1.1700 6 6 2.9542 4.0469 -0.0015 7 6 2.5075 3.4944 1.1771 8 6 2.5178 4.3079 2.4456 9 6 3.8032 4.0217 3.2245 10 6 2.0411 2.1669 1.1931 11 6 1.5802 1.5885 2.3982 12 1 0.8497 2.1071 3.0013 13 6 2.0706 0.3439 2.8094 14 7 1.3986 -0.3704 3.6753 15 14 3.6846 -0.2976 2.1217 16 1 4.8134 0.2476 2.9179 17 1 3.6988 -1.7808 2.1940 18 1 3.8248 0.1304 0.7067 19 1 -0.3634 0.5875 0.8432 20 1 -0.3633 0.4365 -0.9304 21 1 -0.3633 -1.0239 0.0872 22 1 1.8933 -0.5138 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 2.4856 1.4204 -2.0822 25 1 3.2977 3.7429 -2.0904 26 1 3.3123 5.0658 -0.0163 27 1 2.4718 5.3683 2.1976 28 1 1.6557 4.0397 3.0562 29 1 3.8106 4.6096 4.1422 30 1 3.8494 2.9612 3.4725 31 1 4.6655 4.2898 2.6139 32 1 1.7383 -1.2331 3.9600 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044368853.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:44 Heat of formation + Delta-G solvation = 3.296395 kcal Electronic energy + Delta-G solvation = -13541.867832 eV Core-core repulsion = 11466.484107 eV Total energy + Delta-G solvation = -2075.383726 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 204.121 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.46614 -34.15525 -33.41013 -31.72181 -29.43512 -27.97426 -25.14315 -23.06901 -22.45998 -19.95108 -18.94191 -17.44475 -15.34532 -14.58672 -14.53544 -13.63061 -13.19798 -13.13111 -12.82754 -12.33628 -12.20441 -12.02309 -11.57912 -11.15036 -11.03155 -10.85239 -10.60058 -10.37617 -10.25079 -9.98524 -9.68255 -9.54239 -9.27823 -8.87077 -7.43957 -7.22785 -6.66164 -4.29678 2.62330 2.65095 3.16212 3.26515 3.37272 4.11698 4.62517 5.26599 5.83155 5.85679 5.93821 6.05051 6.11220 6.30317 6.33859 6.37959 6.40546 6.53177 6.63161 6.73987 6.76811 6.93594 6.95353 7.04395 7.11376 7.24536 7.38912 7.52676 7.71086 7.74891 8.04210 8.20070 8.54941 8.80099 9.01454 10.36005 Molecular weight = 204.12amu Principal moments of inertia in cm(-1) A = 0.025015 B = 0.019260 C = 0.014090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.052218 B = 1453.478532 C = 1986.754307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.064 4.064 3 C -0.146 4.146 4 C -0.104 4.104 5 C -0.211 4.211 6 C -0.104 4.104 7 C -0.154 4.154 8 C -0.058 4.058 9 C -0.139 4.139 10 C 0.098 3.902 11 C -0.480 4.480 12 H 0.090 0.910 13 C 0.100 3.900 14 N -0.828 5.828 15 Si 0.865 3.135 16 H -0.278 1.278 17 H -0.283 1.283 18 H -0.231 1.231 19 H 0.072 0.928 20 H 0.038 0.962 21 H 0.038 0.962 22 H 0.042 0.958 23 H 0.063 0.937 24 H 0.092 0.908 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.043 0.957 28 H 0.069 0.931 29 H 0.040 0.960 30 H 0.062 0.938 31 H 0.041 0.959 32 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.315 2.483 -4.027 5.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.101 4.101 3 C -0.147 4.147 4 C -0.123 4.123 5 C -0.230 4.230 6 C -0.122 4.122 7 C -0.155 4.155 8 C -0.095 4.095 9 C -0.196 4.196 10 C 0.096 3.904 11 C -0.510 4.510 12 H 0.107 0.893 13 C -0.115 4.115 14 N -0.455 5.455 15 Si 0.690 3.310 16 H -0.204 1.204 17 H -0.209 1.209 18 H -0.154 1.154 19 H 0.091 0.909 20 H 0.057 0.943 21 H 0.057 0.943 22 H 0.061 0.939 23 H 0.081 0.919 24 H 0.111 0.889 25 H 0.111 0.889 26 H 0.111 0.889 27 H 0.061 0.939 28 H 0.087 0.913 29 H 0.059 0.941 30 H 0.081 0.919 31 H 0.060 0.940 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.248 2.266 -3.851 5.002 hybrid contribution 0.810 -0.437 -0.251 0.954 sum 3.058 1.828 -4.102 5.434 Atomic orbital electron populations 1.21578 0.95693 1.00271 1.01599 1.20412 0.96013 0.93947 0.99765 1.20023 1.04944 0.96727 0.92998 1.20574 1.00114 0.95032 0.96547 1.20511 1.10022 0.95438 0.97061 1.20579 1.00774 0.97891 0.93001 1.20113 1.04503 0.97088 0.93841 1.20133 0.98344 0.96325 0.94744 1.21648 0.97270 1.02346 0.98373 1.17504 0.89289 0.90849 0.92732 1.18919 1.24077 1.02168 1.05883 0.89256 1.25678 0.97458 0.94716 0.93609 1.69722 1.36237 1.10960 1.28609 0.87149 0.83028 0.77766 0.83039 1.20449 1.20870 1.15382 0.90948 0.94268 0.94290 0.93887 0.91916 0.88941 0.88903 0.88887 0.93863 0.91268 0.94089 0.91890 0.94019 0.91240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.75 9.83 37.16 0.37 -2.38 16 2 C -0.06 -1.42 4.47 -27.88 -0.12 -1.54 16 3 C -0.15 -3.41 3.36 -103.91 -0.35 -3.76 16 4 C -0.10 -2.26 9.65 -39.66 -0.38 -2.64 16 5 C -0.21 -4.37 10.05 -39.29 -0.39 -4.76 16 6 C -0.10 -2.19 9.66 -39.66 -0.38 -2.57 16 7 C -0.15 -3.49 5.19 -103.92 -0.54 -4.03 16 8 C -0.06 -1.17 5.59 -27.88 -0.16 -1.33 16 9 C -0.14 -2.64 9.89 37.16 0.37 -2.28 16 10 C 0.10 2.41 4.42 -106.83 -0.47 1.94 16 11 C -0.48 -12.50 6.96 -37.74 -0.26 -12.76 16 12 H 0.09 2.50 7.36 -52.49 -0.39 2.11 16 13 C 0.10 2.58 4.24 -17.34 -0.07 2.51 16 14 N -0.83 -22.17 13.93 55.55 0.77 -21.39 16 15 Si 0.87 20.47 24.75 -169.99 -4.21 16.26 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.23 -5.47 5.14 56.52 0.29 -5.18 16 19 H 0.07 1.65 7.27 -51.92 -0.38 1.27 16 20 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 21 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.04 0.85 7.98 -51.93 -0.41 0.44 16 23 H 0.06 1.48 2.72 -51.93 -0.14 1.33 16 24 H 0.09 1.78 8.02 -52.48 -0.42 1.36 16 25 H 0.09 1.67 8.06 -52.48 -0.42 1.25 16 26 H 0.09 1.71 8.06 -52.48 -0.42 1.29 16 27 H 0.04 0.77 8.05 -51.93 -0.42 0.35 16 28 H 0.07 1.46 6.89 -51.93 -0.36 1.10 16 29 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 1.35 7.97 -51.93 -0.41 0.93 16 31 H 0.04 0.74 8.14 -51.92 -0.42 0.32 16 32 H 0.28 6.91 8.30 -40.82 -0.34 6.57 16 LS Contribution 254.59 15.07 3.84 3.84 Total: -1.00 -26.49 254.59 -6.71 -33.21 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -4.71 Total: 1.68 kcal Atomic # 6 Polarization: -31.19 SS G_CDS: -2.40 Total: -33.60 kcal Atomic # 7 Polarization: -22.17 SS G_CDS: 0.77 Total: -21.39 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.21 Total: 16.26 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -26.49 -6.71 -33.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044368853.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.505 kcal (2) G-P(sol) polarization free energy of solvation -26.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds