Wall clock time and date at job start Mon Mar 30 2020 01:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50705 * 109.47212 * 2 1 4 4 C 1.37611 * 120.12584 * 258.40971 * 3 2 1 5 5 C 1.38641 * 120.24697 * 179.72155 * 4 3 2 6 6 C 1.38628 * 120.49967 * 0.25256 * 5 4 3 7 7 C 1.37619 * 120.25119 * 359.97438 * 6 5 4 8 8 C 1.50699 * 120.12673 * 180.02562 * 7 6 5 9 9 C 1.53002 * 109.46972 * 264.99658 * 8 7 6 10 10 C 1.40709 * 119.74448 * 0.02562 * 7 6 5 11 11 C 1.41392 * 120.24569 * 179.97438 * 10 7 6 12 12 H 1.07999 * 119.99990 * 50.65748 * 11 10 7 13 13 C 1.39944 * 120.00329 * 230.65438 * 11 10 7 14 14 N 1.30828 * 120.00394 * 199.97346 * 13 11 10 15 15 Si 1.86801 * 120.00057 * 19.96693 * 13 11 10 16 16 H 1.48502 * 109.47081 * 85.13198 * 15 13 11 17 17 H 1.48500 * 109.47389 * 205.13236 * 15 13 11 18 18 H 1.48498 * 109.47136 * 325.13243 * 15 13 11 19 19 H 1.09008 * 109.47320 * 304.86887 * 1 2 3 20 20 H 1.08999 * 109.47039 * 64.86636 * 1 2 3 21 21 H 1.08995 * 109.47165 * 184.86839 * 1 2 3 22 22 H 1.08994 * 109.47327 * 239.99975 * 2 1 3 23 23 H 1.09000 * 109.47177 * 119.99504 * 2 1 3 24 24 H 1.08004 * 119.87752 * 359.97438 * 4 3 2 25 25 H 1.08003 * 119.75000 * 180.23515 * 5 4 3 26 26 H 1.08007 * 119.87620 * 180.02562 * 6 5 4 27 27 H 1.09002 * 109.47688 * 24.99660 * 8 7 6 28 28 H 1.09002 * 109.47185 * 145.00233 * 8 7 6 29 29 H 1.08994 * 109.47488 * 180.02562 * 9 8 7 30 30 H 1.09005 * 109.47397 * 300.00627 * 9 8 7 31 31 H 1.09008 * 109.47128 * 60.00214 * 9 8 7 32 32 H 0.96996 * 120.00630 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.4881 1.9923 -1.1660 5 6 2.9454 3.3011 -1.1700 6 6 2.9542 4.0469 -0.0015 7 6 2.5075 3.4944 1.1771 8 6 2.5178 4.3079 2.4456 9 6 3.8032 4.0217 3.2245 10 6 2.0411 2.1669 1.1931 11 6 1.5802 1.5885 2.3982 12 1 0.8497 2.1071 3.0013 13 6 2.0706 0.3439 2.8094 14 7 1.3986 -0.3704 3.6753 15 14 3.6846 -0.2976 2.1217 16 1 4.8134 0.2476 2.9179 17 1 3.6988 -1.7808 2.1940 18 1 3.8248 0.1304 0.7067 19 1 -0.3634 0.5875 0.8432 20 1 -0.3633 0.4365 -0.9304 21 1 -0.3633 -1.0239 0.0872 22 1 1.8933 -0.5138 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 2.4856 1.4204 -2.0822 25 1 3.2977 3.7429 -2.0904 26 1 3.3123 5.0658 -0.0163 27 1 2.4718 5.3683 2.1976 28 1 1.6557 4.0397 3.0562 29 1 3.8106 4.6096 4.1422 30 1 3.8494 2.9612 3.4725 31 1 4.6655 4.2898 2.6139 32 1 1.7383 -1.2331 3.9600 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044368853.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:44 Heat of formation + Delta-G solvation = -10.162849 kcal Electronic energy + Delta-G solvation = -13542.451469 eV Core-core repulsion = 11466.484107 eV Total energy + Delta-G solvation = -2075.967362 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 204.121 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.19336 -35.88311 -35.18012 -33.45721 -31.19768 -29.62352 -26.96512 -24.74026 -24.13820 -21.69239 -20.62797 -19.33191 -17.16215 -16.29282 -16.25021 -15.33441 -14.96274 -14.80474 -14.61406 -14.01207 -13.89763 -13.66703 -13.30180 -12.87186 -12.64590 -12.62384 -12.36847 -12.05555 -11.94087 -11.70834 -11.40862 -11.27309 -11.04075 -10.74139 -9.12864 -9.02319 -8.59738 -6.26630 0.86749 0.92218 1.28780 1.37557 1.47323 2.20739 2.77733 3.45150 4.19447 4.23244 4.34323 4.43855 4.54442 4.70432 4.72847 4.76970 4.82190 4.91953 5.01911 5.10804 5.14884 5.22833 5.29359 5.40375 5.51761 5.52738 5.60392 5.81251 6.00575 6.02436 6.18514 6.46082 6.61054 6.95676 7.08082 8.47215 Molecular weight = 204.12amu Principal moments of inertia in cm(-1) A = 0.025015 B = 0.019260 C = 0.014090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.052218 B = 1453.478532 C = 1986.754307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.072 4.072 3 C -0.156 4.156 4 C -0.117 4.117 5 C -0.195 4.195 6 C -0.112 4.112 7 C -0.164 4.164 8 C -0.059 4.059 9 C -0.134 4.134 10 C 0.068 3.932 11 C -0.488 4.488 12 H 0.050 0.950 13 C 0.071 3.929 14 N -0.873 5.873 15 Si 0.909 3.091 16 H -0.285 1.285 17 H -0.275 1.275 18 H -0.228 1.228 19 H 0.038 0.962 20 H 0.058 0.942 21 H 0.053 0.947 22 H 0.068 0.932 23 H 0.044 0.956 24 H 0.120 0.880 25 H 0.129 0.871 26 H 0.125 0.875 27 H 0.072 0.928 28 H 0.045 0.955 29 H 0.065 0.935 30 H 0.029 0.971 31 H 0.056 0.944 32 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.692 3.625 -6.500 8.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.109 4.109 3 C -0.157 4.157 4 C -0.135 4.135 5 C -0.214 4.214 6 C -0.130 4.130 7 C -0.165 4.165 8 C -0.096 4.096 9 C -0.191 4.191 10 C 0.066 3.934 11 C -0.520 4.520 12 H 0.068 0.932 13 C -0.139 4.139 14 N -0.503 5.503 15 Si 0.733 3.267 16 H -0.212 1.212 17 H -0.200 1.200 18 H -0.150 1.150 19 H 0.057 0.943 20 H 0.077 0.923 21 H 0.072 0.928 22 H 0.086 0.914 23 H 0.063 0.937 24 H 0.138 0.862 25 H 0.147 0.853 26 H 0.143 0.857 27 H 0.091 0.909 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.048 0.952 31 H 0.075 0.925 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.626 3.417 -6.338 8.062 hybrid contribution 0.374 -0.614 0.373 0.809 sum 4.000 2.803 -5.965 7.710 Atomic orbital electron populations 1.21487 0.94995 1.00784 1.01097 1.20498 0.96754 0.93606 1.00011 1.20278 1.04826 0.97222 0.93331 1.20941 0.99759 0.95910 0.96862 1.21033 1.07199 0.94868 0.98295 1.20957 1.00196 0.99507 0.92315 1.20497 1.03795 0.96556 0.95609 1.20165 0.98003 0.97655 0.93794 1.21592 0.97192 1.00624 0.99689 1.17655 0.90911 0.92257 0.92568 1.18719 1.24226 1.02492 1.06523 0.93245 1.26112 0.99179 0.94822 0.93758 1.69774 1.37779 1.11801 1.30937 0.86485 0.80147 0.77704 0.82381 1.21169 1.20012 1.15015 0.94319 0.92262 0.92804 0.91351 0.93736 0.86165 0.85285 0.85680 0.90900 0.93584 0.91626 0.95177 0.92531 0.91007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.10 9.83 71.98 0.71 -4.39 16 2 C -0.07 -3.07 4.47 29.85 0.13 -2.93 16 3 C -0.16 -7.01 3.36 -19.40 -0.07 -7.08 16 4 C -0.12 -4.59 9.65 22.22 0.21 -4.38 16 5 C -0.20 -7.13 10.05 22.46 0.23 -6.91 16 6 C -0.11 -4.25 9.66 22.22 0.21 -4.04 16 7 C -0.16 -7.16 5.19 -19.41 -0.10 -7.27 16 8 C -0.06 -2.32 5.59 29.85 0.17 -2.15 16 9 C -0.13 -4.93 9.89 71.98 0.71 -4.22 16 10 C 0.07 3.32 4.42 -21.29 -0.09 3.23 16 11 C -0.49 -26.51 6.96 23.46 0.16 -26.35 16 12 H 0.05 2.99 7.36 -2.91 -0.02 2.97 16 13 C 0.07 3.81 4.24 85.26 0.36 4.17 16 14 N -0.87 -48.93 13.93 21.83 0.30 -48.63 16 15 Si 0.91 42.67 24.75 68.60 1.70 44.37 16 16 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 17 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 18 H -0.23 -10.40 5.14 99.48 0.51 -9.89 16 19 H 0.04 1.80 7.27 -2.38 -0.02 1.78 16 20 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 21 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 22 H 0.07 2.52 7.98 -2.39 -0.02 2.50 16 23 H 0.04 2.08 2.72 -2.39 -0.01 2.07 16 24 H 0.12 4.03 8.02 -2.91 -0.02 4.01 16 25 H 0.13 3.81 8.06 -2.91 -0.02 3.78 16 26 H 0.13 3.94 8.06 -2.91 -0.02 3.92 16 27 H 0.07 2.40 8.05 -2.39 -0.02 2.38 16 28 H 0.05 2.00 6.89 -2.39 -0.02 1.98 16 29 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.03 1.28 7.97 -2.38 -0.02 1.26 16 31 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 32 H 0.28 14.57 8.30 -92.71 -0.77 13.80 16 Total: -1.00 -57.96 254.59 5.53 -52.43 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: 0.89 Total: 14.14 kcal Atomic # 6 Polarization: -64.94 SS G_CDS: 2.64 Total: -62.30 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: 0.30 Total: -48.63 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 1.70 Total: 44.37 kcal Total: -57.96 5.53 -52.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044368853.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.263 kcal (2) G-P(sol) polarization free energy of solvation -57.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds