Wall clock time and date at job start Mon Mar 30 2020 01:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50704 * 109.47548 * 2 1 4 4 C 1.37617 * 119.87530 * 89.99727 * 3 2 1 5 5 C 1.40718 * 119.74183 * 180.02562 * 4 3 2 6 6 C 1.41392 * 120.23874 * 179.72708 * 5 4 3 7 7 H 1.08005 * 120.00544 * 335.76869 * 6 5 4 8 8 C 1.39945 * 119.99912 * 155.78143 * 6 5 4 9 9 N 1.30830 * 119.99741 * 341.78719 * 8 6 5 10 10 Si 1.86803 * 120.00422 * 161.79384 * 8 6 5 11 11 H 1.48494 * 109.47184 * 89.99645 * 10 8 6 12 12 H 1.48503 * 109.46984 * 209.99937 * 10 8 6 13 13 H 1.48503 * 109.46937 * 329.99484 * 10 8 6 14 14 C 1.40715 * 119.51278 * 0.02562 * 5 4 3 15 15 C 1.37614 * 119.74417 * 0.02562 * 14 5 4 16 16 C 1.50703 * 119.87370 * 179.97438 * 15 14 5 17 17 C 1.53003 * 109.46889 * 269.99787 * 16 15 14 18 18 C 1.38630 * 119.87529 * 270.02326 * 3 2 1 19 19 H 1.09003 * 109.47090 * 300.00516 * 1 2 3 20 20 H 1.09002 * 109.47248 * 59.99754 * 1 2 3 21 21 H 1.09000 * 109.47302 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47090 * 239.99484 * 2 1 3 23 23 H 1.09008 * 109.47019 * 119.99861 * 2 1 3 24 24 H 1.08003 * 120.12771 * 359.97438 * 4 3 2 25 25 H 0.97006 * 119.99913 * 180.02562 * 9 8 6 26 26 H 1.07998 * 120.12518 * 179.97438 * 14 5 4 27 27 H 1.08994 * 109.47260 * 29.99968 * 16 15 14 28 28 H 1.09000 * 109.46979 * 150.00448 * 16 15 14 29 29 H 1.09000 * 109.46770 * 60.00533 * 17 16 15 30 30 H 1.09006 * 109.46628 * 179.97438 * 17 16 15 31 31 H 1.08994 * 109.47317 * 300.00146 * 17 16 15 32 32 H 1.08005 * 119.74924 * 359.97438 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2609 2.0671 1.1933 5 6 2.7296 3.3940 1.1900 6 6 2.9624 4.0699 2.4099 7 1 2.4424 3.7628 3.3053 8 6 3.8663 5.1372 2.4570 9 7 4.7481 5.2901 1.5026 10 14 3.8142 6.3433 3.8825 11 1 4.7061 5.8644 4.9689 12 1 4.2715 7.6778 3.4187 13 1 2.4235 6.4465 4.3930 14 6 2.9587 4.0451 -0.0362 15 6 2.7223 3.3796 -1.2173 16 6 2.9663 4.0744 -2.5321 17 6 1.6886 4.7899 -2.9756 18 6 2.2622 2.0720 -1.2021 19 1 -0.3633 0.5139 0.8900 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5138 0.8901 24 1 2.0804 1.5582 2.1287 25 1 5.3750 6.0297 1.5354 26 1 3.3180 5.0635 -0.0502 27 1 3.7686 4.8028 -2.4149 28 1 3.2504 3.3388 -3.2846 29 1 1.4044 5.5256 -2.2231 30 1 1.8652 5.2928 -3.9264 31 1 0.8863 4.0616 -3.0928 32 1 2.0801 1.5571 -2.1339 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044370728.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:46 Heat of formation + Delta-G solvation = -16.755234 kcal Electronic energy + Delta-G solvation = -12862.496488 eV Core-core repulsion = 10786.243258 eV Total energy + Delta-G solvation = -2076.253230 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 204.121 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -37.96517 -34.17413 -33.90181 -31.60991 -28.97231 -27.69363 -25.22258 -22.90548 -22.80453 -20.20537 -18.84907 -16.79781 -15.24784 -14.59286 -14.35131 -13.95811 -13.37349 -13.04470 -12.80693 -12.42393 -12.22907 -11.74468 -11.57289 -11.21386 -10.97053 -10.88837 -10.73868 -10.60290 -10.44851 -10.29163 -10.02816 -9.40075 -9.26175 -9.04120 -7.28891 -7.10286 -6.69334 -4.29295 2.83304 3.04130 3.09377 3.13625 3.26573 3.97177 4.64121 5.57178 5.65704 5.67224 5.78065 5.79211 6.01821 6.17297 6.33850 6.35904 6.40923 6.43571 6.52462 6.60485 6.65272 6.75859 6.84693 6.98959 7.12677 7.33600 7.53409 7.69453 8.00945 8.12704 8.21627 8.37440 8.70514 8.96547 9.06087 10.24774 Molecular weight = 204.12amu Principal moments of inertia in cm(-1) A = 0.027638 B = 0.011119 C = 0.008537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.868383 B = 2517.558607 C = 3278.912007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.077 4.077 3 C -0.064 4.064 4 C -0.222 4.222 5 C 0.111 3.889 6 C -0.466 4.466 7 H 0.075 0.925 8 C 0.077 3.923 9 N -0.795 5.795 10 Si 0.904 3.096 11 H -0.271 1.271 12 H -0.276 1.276 13 H -0.261 1.261 14 C -0.161 4.161 15 C -0.073 4.073 16 C -0.076 4.076 17 C -0.140 4.140 18 C -0.230 4.230 19 H 0.053 0.947 20 H 0.051 0.949 21 H 0.043 0.957 22 H 0.055 0.945 23 H 0.057 0.943 24 H 0.089 0.911 25 H 0.279 0.721 26 H 0.116 0.884 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.043 0.957 31 H 0.050 0.950 32 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.482 -1.828 -3.248 5.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.115 4.115 3 C -0.064 4.064 4 C -0.242 4.242 5 C 0.109 3.891 6 C -0.496 4.496 7 H 0.093 0.907 8 C -0.140 4.140 9 N -0.421 5.421 10 Si 0.728 3.272 11 H -0.196 1.196 12 H -0.201 1.201 13 H -0.185 1.185 14 C -0.180 4.180 15 C -0.073 4.073 16 C -0.114 4.114 17 C -0.197 4.197 18 C -0.250 4.250 19 H 0.072 0.928 20 H 0.070 0.930 21 H 0.062 0.938 22 H 0.074 0.926 23 H 0.076 0.924 24 H 0.107 0.893 25 H 0.090 0.910 26 H 0.134 0.866 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.279 -1.675 -3.316 4.955 hybrid contribution 0.153 0.579 0.677 0.904 sum -3.125 -1.096 -2.638 4.234 Atomic orbital electron populations 1.21701 0.96027 1.00056 1.01971 1.20415 0.95201 0.94973 1.00875 1.19269 0.99333 0.94019 0.93742 1.20818 1.12692 0.95554 0.95116 1.17572 0.88304 0.90115 0.93156 1.19526 1.21478 1.12645 0.95932 0.90657 1.25877 0.93616 0.97504 0.97023 1.69843 1.12622 1.27569 1.32023 0.86391 0.79712 0.79635 0.81431 1.19584 1.20148 1.18526 1.21164 1.06009 1.00013 0.90801 1.19435 0.99776 0.94165 0.93904 1.20399 0.97257 0.98499 0.95216 1.21701 0.98082 1.00147 0.99790 1.20049 1.13768 0.95913 0.95253 0.92788 0.92986 0.93765 0.92635 0.92408 0.89307 0.91046 0.86578 0.92116 0.92815 0.92793 0.93822 0.93119 0.89833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.89 37.16 0.37 -1.88 16 2 C -0.08 -1.41 6.06 -27.88 -0.17 -1.58 16 3 C -0.06 -1.45 5.13 -104.70 -0.54 -1.98 16 4 C -0.22 -5.60 9.44 -38.87 -0.37 -5.96 16 5 C 0.11 3.02 5.57 -106.82 -0.60 2.43 16 6 C -0.47 -12.66 9.05 -37.74 -0.34 -13.00 16 7 H 0.08 1.97 7.91 -52.48 -0.42 1.56 16 8 C 0.08 1.97 5.13 -17.34 -0.09 1.89 16 9 N -0.79 -20.93 10.98 55.55 0.61 -20.32 16 10 Si 0.90 19.01 29.60 -169.99 -5.03 13.98 16 11 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 12 H -0.28 -5.67 7.11 56.52 0.40 -5.26 16 13 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 14 C -0.16 -4.24 8.35 -38.87 -0.32 -4.56 16 15 C -0.07 -1.71 5.13 -104.70 -0.54 -2.25 16 16 C -0.08 -1.49 6.06 -27.88 -0.17 -1.66 16 17 C -0.14 -2.38 9.89 37.16 0.37 -2.01 16 18 C -0.23 -5.26 9.35 -39.29 -0.37 -5.63 16 19 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 20 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 21 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 22 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 23 H 0.06 1.01 8.08 -51.92 -0.42 0.59 16 24 H 0.09 2.13 8.06 -52.48 -0.42 1.71 16 25 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 26 H 0.12 3.17 6.17 -52.49 -0.32 2.85 16 27 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 28 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.08 1.73 8.06 -52.48 -0.42 1.31 16 LS Contribution 270.61 15.07 4.08 4.08 Total: -1.00 -27.57 270.61 -8.04 -35.61 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -4.93 Total: 2.84 kcal Atomic # 6 Polarization: -33.43 SS G_CDS: -2.76 Total: -36.19 kcal Atomic # 7 Polarization: -20.93 SS G_CDS: 0.61 Total: -20.32 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.03 Total: 13.98 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -27.57 -8.04 -35.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044370728.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.854 kcal (2) G-P(sol) polarization free energy of solvation -27.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds