Wall clock time and date at job start Mon Mar 30 2020 01:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50704 * 109.47548 * 2 1 4 4 C 1.37617 * 119.87530 * 89.99727 * 3 2 1 5 5 C 1.40718 * 119.74183 * 180.02562 * 4 3 2 6 6 C 1.41392 * 120.23874 * 179.72708 * 5 4 3 7 7 H 1.08005 * 120.00544 * 335.76869 * 6 5 4 8 8 C 1.39945 * 119.99912 * 155.78143 * 6 5 4 9 9 N 1.30830 * 119.99741 * 341.78719 * 8 6 5 10 10 Si 1.86803 * 120.00422 * 161.79384 * 8 6 5 11 11 H 1.48494 * 109.47184 * 89.99645 * 10 8 6 12 12 H 1.48503 * 109.46984 * 209.99937 * 10 8 6 13 13 H 1.48503 * 109.46937 * 329.99484 * 10 8 6 14 14 C 1.40715 * 119.51278 * 0.02562 * 5 4 3 15 15 C 1.37614 * 119.74417 * 0.02562 * 14 5 4 16 16 C 1.50703 * 119.87370 * 179.97438 * 15 14 5 17 17 C 1.53003 * 109.46889 * 269.99787 * 16 15 14 18 18 C 1.38630 * 119.87529 * 270.02326 * 3 2 1 19 19 H 1.09003 * 109.47090 * 300.00516 * 1 2 3 20 20 H 1.09002 * 109.47248 * 59.99754 * 1 2 3 21 21 H 1.09000 * 109.47302 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47090 * 239.99484 * 2 1 3 23 23 H 1.09008 * 109.47019 * 119.99861 * 2 1 3 24 24 H 1.08003 * 120.12771 * 359.97438 * 4 3 2 25 25 H 0.97006 * 119.99913 * 180.02562 * 9 8 6 26 26 H 1.07998 * 120.12518 * 179.97438 * 14 5 4 27 27 H 1.08994 * 109.47260 * 29.99968 * 16 15 14 28 28 H 1.09000 * 109.46979 * 150.00448 * 16 15 14 29 29 H 1.09000 * 109.46770 * 60.00533 * 17 16 15 30 30 H 1.09006 * 109.46628 * 179.97438 * 17 16 15 31 31 H 1.08994 * 109.47317 * 300.00146 * 17 16 15 32 32 H 1.08005 * 119.74924 * 359.97438 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2609 2.0671 1.1933 5 6 2.7296 3.3940 1.1900 6 6 2.9624 4.0699 2.4099 7 1 2.4424 3.7628 3.3053 8 6 3.8663 5.1372 2.4570 9 7 4.7481 5.2901 1.5026 10 14 3.8142 6.3433 3.8825 11 1 4.7061 5.8644 4.9689 12 1 4.2715 7.6778 3.4187 13 1 2.4235 6.4465 4.3930 14 6 2.9587 4.0451 -0.0362 15 6 2.7223 3.3796 -1.2173 16 6 2.9663 4.0744 -2.5321 17 6 1.6886 4.7899 -2.9756 18 6 2.2622 2.0720 -1.2021 19 1 -0.3633 0.5139 0.8900 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5138 0.8901 24 1 2.0804 1.5582 2.1287 25 1 5.3750 6.0297 1.5354 26 1 3.3180 5.0635 -0.0502 27 1 3.7686 4.8028 -2.4149 28 1 3.2504 3.3388 -3.2846 29 1 1.4044 5.5256 -2.2231 30 1 1.8652 5.2928 -3.9264 31 1 0.8863 4.0616 -3.0928 32 1 2.0801 1.5571 -2.1339 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044370728.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:46 Heat of formation + Delta-G solvation = -29.655224 kcal Electronic energy + Delta-G solvation = -12863.055874 eV Core-core repulsion = 10786.243258 eV Total energy + Delta-G solvation = -2076.812615 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 204.121 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.80002 -35.99062 -35.54335 -33.31436 -30.72953 -29.37301 -27.18114 -24.52289 -24.32680 -22.06018 -20.57103 -18.73925 -17.11094 -16.42551 -16.04324 -15.60192 -14.85292 -14.52138 -14.46425 -14.02213 -13.88687 -13.34979 -13.27025 -12.86848 -12.72598 -12.48562 -12.40145 -12.22198 -11.99031 -11.91309 -11.63735 -11.19412 -11.06012 -10.93534 -9.22712 -8.97985 -8.60997 -6.32753 1.00978 1.14506 1.35781 1.47643 1.53829 2.20277 2.73048 3.71243 4.12643 4.21043 4.31411 4.38089 4.60967 4.66790 4.75942 4.87148 4.91668 4.98864 5.04494 5.08981 5.12578 5.16889 5.21391 5.38331 5.41995 5.43593 5.67164 5.80530 6.11282 6.16854 6.31139 6.45261 6.75122 6.97583 7.10524 8.34995 Molecular weight = 204.12amu Principal moments of inertia in cm(-1) A = 0.027638 B = 0.011119 C = 0.008537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.868383 B = 2517.558607 C = 3278.912007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.077 4.077 3 C -0.062 4.062 4 C -0.247 4.247 5 C 0.079 3.921 6 C -0.506 4.506 7 H 0.070 0.930 8 C 0.036 3.964 9 N -0.826 5.826 10 Si 0.979 3.021 11 H -0.262 1.262 12 H -0.265 1.265 13 H -0.260 1.260 14 C -0.191 4.191 15 C -0.074 4.074 16 C -0.076 4.076 17 C -0.133 4.133 18 C -0.235 4.235 19 H 0.040 0.960 20 H 0.051 0.949 21 H 0.077 0.923 22 H 0.075 0.925 23 H 0.062 0.938 24 H 0.088 0.912 25 H 0.286 0.714 26 H 0.097 0.903 27 H 0.052 0.948 28 H 0.076 0.924 29 H 0.037 0.963 30 H 0.076 0.924 31 H 0.055 0.945 32 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.093 -2.382 -4.233 6.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.114 4.114 3 C -0.062 4.062 4 C -0.267 4.267 5 C 0.077 3.923 6 C -0.536 4.536 7 H 0.088 0.912 8 C -0.179 4.179 9 N -0.452 5.452 10 Si 0.799 3.201 11 H -0.186 1.186 12 H -0.189 1.189 13 H -0.184 1.184 14 C -0.211 4.211 15 C -0.075 4.075 16 C -0.113 4.113 17 C -0.190 4.190 18 C -0.254 4.254 19 H 0.060 0.940 20 H 0.070 0.930 21 H 0.096 0.904 22 H 0.094 0.906 23 H 0.081 0.919 24 H 0.106 0.894 25 H 0.097 0.903 26 H 0.115 0.885 27 H 0.071 0.929 28 H 0.094 0.906 29 H 0.056 0.944 30 H 0.095 0.905 31 H 0.074 0.926 32 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -3.894 -2.245 -4.313 6.229 hybrid contribution 0.338 0.652 0.892 1.155 sum -3.556 -1.593 -3.421 5.185 Atomic orbital electron populations 1.21652 0.94080 1.02096 1.01379 1.20492 0.96795 0.91972 1.02144 1.19783 0.97410 0.96187 0.92784 1.20986 1.13992 0.95335 0.96357 1.17981 0.89200 0.91327 0.93821 1.19776 1.23023 1.14744 0.96041 0.91165 1.26730 0.92563 0.98631 0.99953 1.69900 1.13118 1.28337 1.33847 0.85265 0.79710 0.77250 0.77837 1.18636 1.18894 1.18433 1.21107 1.08402 0.99682 0.91889 1.19910 0.98029 0.94711 0.94817 1.20457 0.98419 0.98821 0.93634 1.21639 0.96738 0.99831 1.00815 1.20453 1.12802 0.95680 0.96471 0.94041 0.92958 0.90419 0.90599 0.91920 0.89391 0.90298 0.88526 0.92894 0.90569 0.94425 0.90529 0.92557 0.86943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.95 9.89 71.98 0.71 -3.23 16 2 C -0.08 -2.62 6.06 29.85 0.18 -2.44 16 3 C -0.06 -2.75 5.13 -19.92 -0.10 -2.86 16 4 C -0.25 -12.76 9.44 22.73 0.21 -12.55 16 5 C 0.08 4.48 5.57 -21.29 -0.12 4.36 16 6 C -0.51 -28.73 9.05 23.46 0.21 -28.52 16 7 H 0.07 3.87 7.91 -2.91 -0.02 3.85 16 8 C 0.04 1.88 5.13 85.26 0.44 2.31 16 9 N -0.83 -44.86 10.98 21.83 0.24 -44.62 16 10 Si 0.98 39.69 29.60 68.60 2.03 41.72 16 11 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 12 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 13 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 14 C -0.19 -10.46 8.35 22.73 0.19 -10.27 16 15 C -0.07 -3.50 5.13 -19.92 -0.10 -3.60 16 16 C -0.08 -2.86 6.06 29.85 0.18 -2.67 16 17 C -0.13 -4.25 9.89 71.98 0.71 -3.54 16 18 C -0.24 -10.38 9.35 22.46 0.21 -10.17 16 19 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 20 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 21 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 22 H 0.08 2.29 8.08 -2.39 -0.02 2.28 16 23 H 0.06 2.07 8.08 -2.38 -0.02 2.05 16 24 H 0.09 4.39 8.06 -2.91 -0.02 4.37 16 25 H 0.29 14.03 8.30 -92.70 -0.77 13.26 16 26 H 0.10 5.55 6.17 -2.91 -0.02 5.53 16 27 H 0.05 2.05 8.08 -2.39 -0.02 2.03 16 28 H 0.08 2.51 8.08 -2.39 -0.02 2.49 16 29 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 31 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.11 4.28 8.06 -2.91 -0.02 4.26 16 Total: -1.00 -61.16 270.61 6.07 -55.10 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: 1.07 Total: 20.98 kcal Atomic # 6 Polarization: -75.90 SS G_CDS: 2.73 Total: -73.18 kcal Atomic # 7 Polarization: -44.86 SS G_CDS: 0.24 Total: -44.62 kcal Atomic # 14 Polarization: 39.69 SS G_CDS: 2.03 Total: 41.72 kcal Total: -61.16 6.07 -55.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044370728.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.441 kcal (2) G-P(sol) polarization free energy of solvation -61.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds