Wall clock time and date at job start Mon Mar 30 2020 02:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30889 * 1 3 3 Si 1.86804 * 119.99496 * 2 1 4 4 H 1.48506 * 109.46867 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47358 * 299.99582 * 3 2 1 6 6 H 1.48498 * 109.47567 * 59.99933 * 3 2 1 7 7 C 1.39853 * 120.00274 * 179.97438 * 2 1 3 8 8 H 1.08010 * 120.00064 * 197.97884 * 7 2 1 9 9 C 1.41306 * 120.00270 * 17.97773 * 7 2 1 10 10 C 1.40419 * 120.06793 * 24.62159 * 9 7 2 11 11 C 1.39051 * 119.33955 * 180.25345 * 10 9 7 12 12 C 1.46658 * 133.87570 * 180.46279 * 11 10 9 13 13 C 1.34180 * 106.90304 * 179.47776 * 12 11 10 14 14 N 1.36839 * 110.00223 * 359.74665 * 13 12 11 15 15 H 0.97001 * 125.00230 * 179.97438 * 14 13 12 16 16 C 1.37417 * 110.00812 * 359.97438 * 14 13 12 17 17 C 1.39889 * 133.12901 * 180.02562 * 16 14 13 18 18 F 1.35099 * 119.82847 * 359.97438 * 17 16 14 19 19 C 1.36207 * 120.34007 * 179.97438 * 17 16 14 20 20 H 0.96998 * 120.00182 * 0.02562 * 1 2 3 21 21 H 1.07999 * 120.33452 * 359.97438 * 10 9 7 22 22 H 1.08003 * 126.54635 * 359.22411 * 12 11 10 23 23 H 1.08003 * 124.99850 * 179.71094 * 13 12 11 24 24 H 1.08002 * 119.72028 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.7028 1.3465 0.0006 5 1 1.8841 2.3965 -1.2125 6 1 1.8840 2.3966 1.2124 7 6 2.0082 -1.2111 0.0005 8 1 3.0488 -1.2338 0.2893 9 6 1.3535 -2.4052 -0.3766 10 6 0.2295 -2.3561 -1.2168 11 6 -0.4063 -3.5401 -1.5741 12 6 -1.5650 -3.8579 -2.4150 13 6 -1.7052 -5.1922 -2.3979 14 7 -0.7297 -5.7554 -1.6209 15 1 -0.6279 -6.7063 -1.4582 16 6 0.0844 -4.7760 -1.1051 17 6 1.2056 -4.8066 -0.2690 18 9 1.6723 -5.9898 0.1862 19 6 1.8291 -3.6495 0.0883 20 1 -0.4850 0.8400 -0.0004 21 1 -0.1404 -1.4080 -1.5782 22 1 -2.1890 -3.1523 -2.9435 23 1 -2.4751 -5.7409 -2.9201 24 1 2.6942 -3.6848 0.7340 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044370947.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:03 Heat of formation + Delta-G solvation = -0.452207 kcal Electronic energy + Delta-G solvation = -12487.177427 eV Core-core repulsion = 10086.911840 eV Total energy + Delta-G solvation = -2400.265588 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.060 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -47.83315 -39.83917 -35.97606 -33.05550 -30.36550 -28.88959 -27.49988 -24.97144 -21.53419 -20.57980 -19.67156 -17.46145 -17.14900 -15.32563 -15.05939 -14.67965 -14.60100 -14.12856 -13.17950 -13.01668 -12.55306 -11.91097 -11.78185 -11.56544 -11.17038 -10.92835 -10.68267 -10.07181 -9.95184 -9.70654 -8.98976 -8.47989 -7.22122 -6.71665 -6.58932 -4.26180 2.31432 2.77905 3.11244 3.16171 3.19650 3.66670 3.97068 4.04623 4.61294 5.47513 5.57171 5.62593 5.97544 6.28122 6.54441 6.64470 6.88144 7.05343 7.20688 7.27496 7.55174 7.71366 8.00738 8.03667 8.18929 8.47337 8.61161 8.89132 8.90851 10.24306 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.044691 B = 0.010615 C = 0.008785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.379083 B = 2637.021871 C = 3186.337819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.076 3.924 3 Si 0.907 3.093 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.276 1.276 7 C -0.461 4.461 8 H 0.079 0.921 9 C 0.105 3.895 10 C -0.150 4.150 11 C -0.052 4.052 12 C -0.224 4.224 13 C 0.037 3.963 14 N -0.603 5.603 15 H 0.401 0.599 16 C -0.031 4.031 17 C 0.086 3.914 18 F -0.171 7.171 19 C -0.202 4.202 20 H 0.279 0.721 21 H 0.126 0.874 22 H 0.133 0.867 23 H 0.154 0.846 24 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.550 -3.978 -2.803 5.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.201 1.201 7 C -0.491 4.491 8 H 0.097 0.903 9 C 0.101 3.899 10 C -0.171 4.171 11 C -0.056 4.056 12 C -0.251 4.251 13 C -0.090 4.090 14 N -0.208 5.208 15 H 0.236 0.764 16 C -0.134 4.134 17 C 0.065 3.935 18 F -0.150 7.150 19 C -0.222 4.222 20 H 0.090 0.910 21 H 0.144 0.856 22 H 0.151 0.849 23 H 0.171 0.829 24 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.709 -3.964 -2.740 5.113 hybrid contribution 0.351 0.084 0.225 0.425 sum -1.358 -3.880 -2.515 4.819 Atomic orbital electron populations 1.69863 1.07480 1.29016 1.35554 1.25839 0.94704 1.01166 0.92433 0.86285 0.80976 0.81107 0.78489 1.18450 1.19738 1.20104 1.19428 0.98114 0.90958 1.40591 0.90322 1.17176 0.91863 0.90995 0.89824 1.20793 0.99332 0.95412 1.01606 1.19025 0.95840 0.91973 0.98738 1.21553 1.01707 0.94073 1.07803 1.21456 0.94567 0.94135 0.98864 1.41241 1.26915 1.07325 1.45270 0.76430 1.17869 0.98239 0.89415 1.07875 1.16314 0.95464 0.80625 1.01079 1.91319 1.88687 1.46568 1.88424 1.20666 1.03807 0.91329 1.06416 0.90962 0.85604 0.84915 0.82862 0.87026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.54 10.96 55.54 0.61 -19.93 14 2 C 0.08 1.90 5.13 -17.35 -0.09 1.81 14 3 Si 0.91 18.59 29.60 -169.99 -5.03 13.56 14 4 H -0.26 -5.29 7.11 56.52 0.40 -4.89 14 5 H -0.27 -5.49 7.11 56.52 0.40 -5.09 14 6 H -0.28 -5.57 7.11 56.52 0.40 -5.17 14 7 C -0.46 -12.16 9.04 -37.81 -0.34 -12.50 14 8 H 0.08 1.98 7.91 -52.48 -0.41 1.57 14 9 C 0.10 2.80 5.57 -106.83 -0.60 2.21 14 10 C -0.15 -3.99 8.75 -38.46 -0.34 -4.32 14 11 C -0.05 -1.27 6.36 -105.15 -0.67 -1.94 14 12 C -0.22 -4.56 11.09 -37.61 -0.42 -4.97 14 13 C 0.04 0.63 11.81 -16.75 -0.20 0.44 14 14 N -0.60 -11.39 6.05 -10.45 -0.06 -11.45 14 15 H 0.40 6.26 8.96 -40.82 -0.37 5.89 14 16 C -0.03 -0.72 7.26 -83.70 -0.61 -1.32 14 17 C 0.09 2.07 7.26 -39.69 -0.29 1.79 14 18 F -0.17 -3.79 17.26 2.25 0.04 -3.75 14 19 C -0.20 -5.05 9.66 -39.23 -0.38 -5.43 14 20 H 0.28 6.56 8.30 -40.82 -0.34 6.22 14 21 H 0.13 3.42 6.17 -52.49 -0.32 3.10 14 22 H 0.13 2.40 8.06 -52.48 -0.42 1.98 14 23 H 0.15 1.92 8.06 -52.48 -0.42 1.49 14 24 H 0.11 2.60 8.06 -52.49 -0.42 2.18 14 LS Contribution 222.62 15.07 3.35 3.35 Total: -1.00 -28.66 222.62 -6.52 -35.18 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -1.51 Total: 7.28 kcal Atomic # 6 Polarization: -20.33 SS G_CDS: -3.92 Total: -24.25 kcal Atomic # 7 Polarization: -31.93 SS G_CDS: 0.55 Total: -31.39 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.04 Total: -3.75 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal Total LS contribution 3.35 Total: 3.35 kcal Total: -28.66 -6.52 -35.18 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044370947.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.730 kcal (2) G-P(sol) polarization free energy of solvation -28.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds