Wall clock time and date at job start Mon Mar 30 2020 02:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30889 * 1 3 3 Si 1.86804 * 119.99496 * 2 1 4 4 H 1.48506 * 109.46867 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47358 * 299.99582 * 3 2 1 6 6 H 1.48498 * 109.47567 * 59.99933 * 3 2 1 7 7 C 1.39853 * 120.00274 * 179.97438 * 2 1 3 8 8 H 1.08010 * 120.00064 * 197.97884 * 7 2 1 9 9 C 1.41306 * 120.00270 * 17.97773 * 7 2 1 10 10 C 1.40419 * 120.06793 * 24.62159 * 9 7 2 11 11 C 1.39051 * 119.33955 * 180.25345 * 10 9 7 12 12 C 1.46658 * 133.87570 * 180.46279 * 11 10 9 13 13 C 1.34180 * 106.90304 * 179.47776 * 12 11 10 14 14 N 1.36839 * 110.00223 * 359.74665 * 13 12 11 15 15 H 0.97001 * 125.00230 * 179.97438 * 14 13 12 16 16 C 1.37417 * 110.00812 * 359.97438 * 14 13 12 17 17 C 1.39889 * 133.12901 * 180.02562 * 16 14 13 18 18 F 1.35099 * 119.82847 * 359.97438 * 17 16 14 19 19 C 1.36207 * 120.34007 * 179.97438 * 17 16 14 20 20 H 0.96998 * 120.00182 * 0.02562 * 1 2 3 21 21 H 1.07999 * 120.33452 * 359.97438 * 10 9 7 22 22 H 1.08003 * 126.54635 * 359.22411 * 12 11 10 23 23 H 1.08003 * 124.99850 * 179.71094 * 13 12 11 24 24 H 1.08002 * 119.72028 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.7028 1.3465 0.0006 5 1 1.8841 2.3965 -1.2125 6 1 1.8840 2.3966 1.2124 7 6 2.0082 -1.2111 0.0005 8 1 3.0488 -1.2338 0.2893 9 6 1.3535 -2.4052 -0.3766 10 6 0.2295 -2.3561 -1.2168 11 6 -0.4063 -3.5401 -1.5741 12 6 -1.5650 -3.8579 -2.4150 13 6 -1.7052 -5.1922 -2.3979 14 7 -0.7297 -5.7554 -1.6209 15 1 -0.6279 -6.7063 -1.4582 16 6 0.0844 -4.7760 -1.1051 17 6 1.2056 -4.8066 -0.2690 18 9 1.6723 -5.9898 0.1862 19 6 1.8291 -3.6495 0.0883 20 1 -0.4850 0.8400 -0.0004 21 1 -0.1404 -1.4080 -1.5782 22 1 -2.1890 -3.1523 -2.9435 23 1 -2.4751 -5.7409 -2.9201 24 1 2.6942 -3.6848 0.7340 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044370947.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:03 Heat of formation + Delta-G solvation = -17.267924 kcal Electronic energy + Delta-G solvation = -12487.906612 eV Core-core repulsion = 10086.911840 eV Total energy + Delta-G solvation = -2400.994772 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.060 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.67855 -41.51995 -37.81806 -34.93798 -32.07630 -30.75318 -29.25165 -26.86158 -23.35088 -22.40655 -21.28128 -19.26985 -18.93707 -17.16406 -16.84798 -16.50837 -16.41084 -15.84154 -14.94770 -14.67636 -14.19738 -13.64197 -13.59188 -13.23564 -12.87642 -12.72601 -12.42635 -11.94972 -11.75805 -11.56161 -10.85720 -10.20999 -9.05247 -8.58793 -8.36344 -6.23501 0.50928 0.96186 1.42356 1.51788 1.57780 2.04180 2.25196 2.51138 2.72668 3.59474 3.67920 4.17373 4.32187 4.61003 4.83990 4.92227 5.03413 5.25110 5.33615 5.51870 5.70188 5.91672 6.10574 6.19872 6.32186 6.67669 6.94050 6.97307 7.00496 8.39519 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.044691 B = 0.010615 C = 0.008785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.379083 B = 2637.021871 C = 3186.337819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.035 3.965 3 Si 0.983 3.017 4 H -0.258 1.258 5 H -0.265 1.265 6 H -0.266 1.266 7 C -0.496 4.496 8 H 0.078 0.922 9 C 0.079 3.921 10 C -0.178 4.178 11 C -0.073 4.073 12 C -0.262 4.262 13 C 0.080 3.920 14 N -0.591 5.591 15 H 0.421 0.579 16 C -0.044 4.044 17 C 0.088 3.912 18 F -0.160 7.160 19 C -0.224 4.224 20 H 0.288 0.712 21 H 0.108 0.892 22 H 0.149 0.851 23 H 0.218 0.782 24 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.421 -4.904 -3.605 6.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.179 4.179 3 Si 0.804 3.196 4 H -0.181 1.181 5 H -0.189 1.189 6 H -0.191 1.191 7 C -0.526 4.526 8 H 0.096 0.904 9 C 0.076 3.924 10 C -0.200 4.200 11 C -0.078 4.078 12 C -0.288 4.288 13 C -0.047 4.047 14 N -0.197 5.197 15 H 0.259 0.741 16 C -0.149 4.149 17 C 0.066 3.934 18 F -0.139 7.139 19 C -0.244 4.244 20 H 0.098 0.902 21 H 0.125 0.875 22 H 0.167 0.833 23 H 0.234 0.766 24 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.585 -4.935 -3.539 6.600 hybrid contribution 0.520 0.194 0.433 0.704 sum -2.065 -4.741 -3.106 6.032 Atomic orbital electron populations 1.69924 1.08996 1.30406 1.35917 1.26712 0.95463 1.04410 0.91336 0.85147 0.79406 0.76187 0.78868 1.18138 1.18920 1.19133 1.19698 0.98400 0.92124 1.42390 0.90361 1.17494 0.92575 0.91928 0.90451 1.20724 1.00432 0.95724 1.03073 1.19483 0.97229 0.91732 0.99341 1.21850 1.01618 0.96161 1.09151 1.22332 0.93449 0.93312 0.95625 1.41348 1.26123 1.07804 1.44443 0.74137 1.17929 0.98532 0.90519 1.07878 1.16343 0.95551 0.80643 1.00828 1.91335 1.88593 1.45734 1.88269 1.20765 1.04670 0.91531 1.07462 0.90187 0.87456 0.83286 0.76592 0.86421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.10 10.96 21.81 0.24 -43.86 14 2 C 0.04 1.81 5.13 85.22 0.44 2.24 14 3 Si 0.98 38.65 29.60 68.60 2.03 40.68 14 4 H -0.26 -9.90 7.11 99.48 0.71 -9.19 14 5 H -0.26 -9.99 7.11 99.48 0.71 -9.28 14 6 H -0.27 -10.01 7.11 99.48 0.71 -9.31 14 7 C -0.50 -27.27 9.04 23.42 0.21 -27.05 14 8 H 0.08 4.12 7.91 -2.91 -0.02 4.10 14 9 C 0.08 4.40 5.57 -21.29 -0.12 4.28 14 10 C -0.18 -9.84 8.75 23.00 0.20 -9.64 14 11 C -0.07 -3.60 6.36 -20.21 -0.13 -3.73 14 12 C -0.26 -10.09 11.09 23.54 0.26 -9.83 14 13 C 0.08 2.41 11.81 82.99 0.98 3.39 14 14 N -0.59 -20.25 6.05 -186.98 -1.13 -21.38 14 15 H 0.42 11.33 8.96 -92.71 -0.83 10.49 14 16 C -0.04 -2.01 7.26 39.35 0.29 -1.73 14 17 C 0.09 4.21 7.26 22.20 0.16 4.37 14 18 F -0.16 -6.94 17.26 44.97 0.78 -6.17 14 19 C -0.22 -11.56 9.66 22.50 0.22 -11.34 14 20 H 0.29 13.79 8.30 -92.71 -0.77 13.02 14 21 H 0.11 6.17 6.17 -2.91 -0.02 6.15 14 22 H 0.15 5.12 8.06 -2.91 -0.02 5.09 14 23 H 0.22 3.78 8.06 -2.91 -0.02 3.76 14 24 H 0.12 5.70 8.06 -2.91 -0.02 5.67 14 Total: -1.00 -64.11 222.62 4.83 -59.28 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: 0.41 Total: 20.50 kcal Atomic # 6 Polarization: -51.56 SS G_CDS: 2.51 Total: -49.05 kcal Atomic # 7 Polarization: -64.35 SS G_CDS: -0.89 Total: -65.24 kcal Atomic # 9 Polarization: -6.94 SS G_CDS: 0.78 Total: -6.17 kcal Atomic # 14 Polarization: 38.65 SS G_CDS: 2.03 Total: 40.68 kcal Total: -64.11 4.83 -59.28 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044370947.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.008 kcal (2) G-P(sol) polarization free energy of solvation -64.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds