Wall clock time and date at job start Mon Mar 30 2020 01:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47467 * 2 1 4 4 C 1.52997 * 109.47056 * 240.00044 * 2 1 3 5 5 C 1.50696 * 109.47344 * 60.00169 * 4 2 1 6 6 H 1.08005 * 119.99788 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00469 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99818 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00128 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47320 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47162 * 119.99892 * 9 7 5 12 12 H 1.48500 * 109.46745 * 239.99597 * 9 7 5 13 13 C 1.50706 * 109.47428 * 120.00093 * 2 1 3 14 14 C 1.38237 * 119.99761 * 300.00365 * 13 2 1 15 15 C 1.38235 * 119.99712 * 179.97438 * 14 13 2 16 16 C 1.38234 * 120.00220 * 359.94731 * 15 14 13 17 17 C 1.38233 * 120.00037 * 0.28719 * 16 15 14 18 18 C 1.38234 * 120.00191 * 119.97467 * 13 2 1 19 19 H 1.09007 * 109.46732 * 299.99668 * 1 2 3 20 20 H 1.08992 * 109.46964 * 59.99919 * 1 2 3 21 21 H 1.08999 * 109.47201 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.47368 * 179.97438 * 3 2 1 23 23 H 1.09002 * 109.46902 * 300.00766 * 3 2 1 24 24 H 1.09004 * 109.47125 * 59.99963 * 3 2 1 25 25 H 1.09006 * 109.47161 * 180.02562 * 4 2 1 26 26 H 1.08999 * 109.47108 * 300.00048 * 4 2 1 27 27 H 0.96998 * 120.00093 * 180.02562 * 8 7 5 28 28 H 1.08005 * 120.00088 * 359.96779 * 14 13 2 29 29 H 1.07999 * 119.99770 * 179.97438 * 15 14 13 30 30 H 1.08002 * 119.99744 * 180.02562 * 16 15 14 31 31 H 1.07998 * 120.00395 * 179.72811 * 17 16 15 32 32 H 1.07999 * 119.99990 * 0.02562 * 18 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9171 0.8676 -2.3806 7 6 1.8703 -0.4821 -3.7320 8 7 2.6264 -1.5515 -3.8527 9 14 1.2471 0.3981 -5.2571 10 1 0.4217 1.5645 -4.8530 11 1 2.4018 0.8647 -6.0660 12 1 0.4219 -0.5356 -6.0649 13 6 2.0324 -0.7104 1.2305 14 6 1.6984 -0.2382 2.4860 15 6 2.1588 -0.8902 3.6147 16 6 2.9523 -2.0150 3.4878 17 6 3.2903 -2.4844 2.2323 18 6 2.8267 -1.8346 1.1036 19 1 -0.3633 0.5138 0.8901 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0276 -0.0005 22 1 3.1300 1.4425 0.0005 23 1 1.6766 1.9563 -0.8899 24 1 1.6768 1.9564 0.8900 25 1 3.1300 -0.7216 -1.2490 26 1 1.6766 -1.7489 -1.2492 27 1 2.8607 -1.8828 -4.7336 28 1 1.0778 0.6402 2.5851 29 1 1.8982 -0.5210 4.5956 30 1 3.3117 -2.5245 4.3697 31 1 3.9138 -3.3606 2.1332 32 1 3.0876 -2.2036 0.1227 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057348860.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:24 Heat of formation + Delta-G solvation = 2.084802 kcal Electronic energy + Delta-G solvation = -13047.517202 eV Core-core repulsion = 10972.080938 eV Total energy + Delta-G solvation = -2075.436264 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 204.121 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.19840 -35.83162 -32.41718 -30.53557 -29.37987 -27.06133 -26.36880 -23.80974 -22.07584 -21.36629 -18.35193 -16.65947 -15.86899 -14.75495 -14.45985 -14.09665 -13.39088 -13.29967 -12.98923 -12.67145 -12.14985 -11.97405 -11.52291 -11.34249 -10.99668 -10.85798 -10.66537 -10.60742 -10.21237 -10.04139 -9.92048 -9.04730 -8.84945 -8.45944 -8.32955 -8.13241 -5.98254 -3.98590 1.86016 1.89297 3.31600 3.39604 3.42700 4.29472 4.47157 5.31092 5.33742 5.37987 5.41660 5.62709 5.91641 5.96862 6.04600 6.09839 6.19674 6.41993 6.48588 6.59462 6.68941 6.71541 6.87540 6.97411 6.97712 7.13209 7.18327 7.39890 7.53785 7.67757 7.80500 8.01195 8.45451 9.06421 9.64451 11.13381 Molecular weight = 204.12amu Principal moments of inertia in cm(-1) A = 0.052943 B = 0.008723 C = 0.007892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.741212 B = 3209.296393 C = 3546.972874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.030 4.030 3 C -0.122 4.122 4 C 0.033 3.967 5 C -0.511 4.511 6 H 0.060 0.940 7 C 0.055 3.945 8 N -0.896 5.896 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C -0.052 4.052 14 C -0.124 4.124 15 C -0.129 4.129 16 C -0.140 4.140 17 C -0.124 4.124 18 C -0.115 4.115 19 H 0.032 0.968 20 H 0.066 0.934 21 H 0.045 0.955 22 H 0.045 0.955 23 H 0.066 0.934 24 H 0.032 0.968 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.259 0.741 28 H 0.115 0.885 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.115 0.885 32 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.932 1.325 10.989 11.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.031 4.031 3 C -0.179 4.179 4 C -0.003 4.003 5 C -0.549 4.549 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.052 4.052 14 C -0.142 4.142 15 C -0.147 4.147 16 C -0.158 4.158 17 C -0.142 4.142 18 C -0.132 4.132 19 H 0.052 0.948 20 H 0.085 0.915 21 H 0.065 0.935 22 H 0.065 0.935 23 H 0.085 0.915 24 H 0.051 0.949 25 H 0.037 0.963 26 H 0.037 0.963 27 H 0.068 0.932 28 H 0.133 0.867 29 H 0.130 0.870 30 H 0.129 0.871 31 H 0.133 0.867 32 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.857 1.218 10.858 10.959 hybrid contribution -0.227 0.321 -0.888 0.971 sum -1.084 1.539 9.970 10.146 Atomic orbital electron populations 1.21745 0.94737 1.01024 1.00438 1.19700 0.95094 0.95096 0.93161 1.21746 1.00383 0.95374 1.00439 1.19225 0.96170 0.95190 0.89760 1.21302 1.30926 1.11989 0.90667 0.92214 1.25009 0.95351 0.95102 0.99060 1.69967 1.37198 1.23150 1.23253 0.86603 0.78617 0.79724 0.83462 1.19778 1.21142 1.21147 1.20315 0.95216 0.94709 0.94970 1.21013 1.00762 1.00123 0.92260 1.21004 0.99202 0.96508 0.97986 1.20985 1.00229 0.97568 0.97060 1.21149 1.00368 0.99976 0.92745 1.21503 0.97001 0.95349 0.99377 0.94847 0.91465 0.93548 0.93550 0.91460 0.94854 0.96321 0.96319 0.93165 0.86695 0.87014 0.87066 0.86714 0.84661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.35 8.03 37.16 0.30 -2.05 16 2 C -0.03 -0.63 0.61 -155.66 -0.10 -0.72 16 3 C -0.12 -2.35 8.03 37.16 0.30 -2.05 16 4 C 0.03 0.84 2.70 -27.89 -0.08 0.76 16 5 C -0.51 -13.85 7.65 -34.44 -0.26 -14.12 16 6 H 0.06 1.57 5.68 -52.48 -0.30 1.27 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.51 13.29 55.43 0.74 -25.77 16 9 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 10 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 13 C -0.05 -0.99 4.76 -104.62 -0.50 -1.48 16 14 C -0.12 -2.03 8.71 -39.58 -0.34 -2.37 16 15 C -0.13 -1.89 10.05 -39.58 -0.40 -2.28 16 16 C -0.14 -2.04 10.05 -39.58 -0.40 -2.44 16 17 C -0.12 -2.00 10.05 -39.58 -0.40 -2.39 16 18 C -0.11 -2.16 8.98 -39.58 -0.36 -2.52 16 19 H 0.03 0.55 7.39 -51.92 -0.38 0.16 16 20 H 0.07 1.35 6.62 -51.93 -0.34 1.01 16 21 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 22 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.07 1.35 6.62 -51.93 -0.34 1.01 16 24 H 0.03 0.55 7.39 -51.93 -0.38 0.16 16 25 H 0.02 0.50 7.51 -51.93 -0.39 0.11 16 26 H 0.02 0.50 7.51 -51.93 -0.39 0.11 16 27 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 28 H 0.12 1.71 7.10 -52.48 -0.37 1.34 16 29 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 30 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 31 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 32 H 0.14 2.78 5.90 -52.49 -0.31 2.47 16 LS Contribution 259.70 15.07 3.91 3.91 Total: -1.00 -28.99 259.70 -7.16 -36.15 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -4.46 Total: -0.49 kcal Atomic # 6 Polarization: -27.88 SS G_CDS: -2.33 Total: -30.21 kcal Atomic # 7 Polarization: -26.51 SS G_CDS: 0.74 Total: -25.77 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -28.99 -7.16 -36.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057348860.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.232 kcal (2) G-P(sol) polarization free energy of solvation -28.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds