Wall clock time and date at job start Mon Mar 30 2020 02:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30688 * 1 3 3 Si 1.86801 * 119.99828 * 2 1 4 4 H 1.48500 * 109.47349 * 274.98247 * 3 2 1 5 5 H 1.48505 * 109.47061 * 34.98175 * 3 2 1 6 6 H 1.48497 * 109.47054 * 154.97832 * 3 2 1 7 7 C 1.40189 * 120.00233 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00021 * 186.02348 * 7 2 1 9 9 C 1.40287 * 120.00022 * 6.01896 * 7 2 1 10 10 N 1.32982 * 126.20359 * 354.26212 * 9 7 2 11 11 C 1.32993 * 109.75244 * 180.02562 * 10 9 7 12 12 C 1.48284 * 125.29555 * 179.97438 * 11 10 9 13 13 C 1.46745 * 127.12370 * 179.97438 * 12 11 10 14 14 C 1.34346 * 106.01791 * 179.97438 * 13 12 11 15 15 O 1.34170 * 109.02149 * 0.26543 * 14 13 12 16 16 C 1.34020 * 110.76669 * 359.55257 * 15 14 13 17 17 N 1.32309 * 109.40748 * 0.26195 * 11 10 9 18 18 N 1.37125 * 126.20228 * 174.30412 * 9 7 2 19 19 H 0.96995 * 126.92769 * 359.97438 * 18 9 7 20 20 H 0.97001 * 119.99824 * 0.02562 * 1 2 3 21 21 H 1.08002 * 126.99190 * 0.02562 * 13 12 11 22 22 H 1.08005 * 125.48758 * 179.97438 * 14 13 12 23 23 H 1.08009 * 125.77859 * 180.14932 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 2.3830 2.1073 -1.3948 5 1 1.4948 2.6200 0.8027 6 1 3.5870 1.4121 0.5922 7 6 2.0079 -1.2140 -0.0005 8 1 3.0834 -1.2166 0.0976 9 6 1.3123 -2.4256 -0.1285 10 7 -0.0090 -2.5743 -0.1492 11 6 -0.3144 -3.8618 -0.2828 12 6 -1.6890 -4.4144 -0.3447 13 6 -2.0713 -5.8235 -0.4917 14 6 -3.4146 -5.8445 -0.4979 15 8 -3.8721 -4.5891 -0.3753 16 6 -2.8562 -3.7206 -0.2765 17 7 0.7992 -4.5735 -0.3457 18 7 1.8716 -3.6713 -0.2541 19 1 2.8173 -3.8863 -0.2721 20 1 -0.4850 0.8401 -0.0004 21 1 -1.4078 -6.6714 -0.5766 22 1 -4.0275 -6.7288 -0.5917 23 1 -2.9489 -2.6502 -0.1666 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070584220.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:52 Heat of formation + Delta-G solvation = 85.750281 kcal Electronic energy + Delta-G solvation = -12341.448048 eV Core-core repulsion = 9964.840442 eV Total energy + Delta-G solvation = -2376.607606 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.059 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.74035 -39.55149 -33.71316 -32.62003 -30.45003 -29.45268 -28.65203 -25.85682 -22.41017 -20.96077 -20.21861 -18.89608 -17.14783 -16.72606 -15.73655 -15.38610 -14.68634 -14.19075 -13.41408 -13.22736 -12.39353 -12.25337 -11.84022 -11.59518 -11.32283 -10.86657 -10.38981 -9.97976 -9.81882 -9.32284 -8.51925 -7.94041 -7.88067 -7.50405 -6.64792 -4.73911 2.25724 2.72355 2.97965 3.06865 3.10099 3.60752 3.73043 3.88332 4.47601 4.72456 5.16784 5.47616 5.52526 5.79124 6.00986 6.25068 6.71960 6.85229 6.97398 7.12800 7.55902 7.71194 7.96951 8.27465 8.32222 8.71332 9.16344 10.14129 10.29777 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.054046 B = 0.008935 C = 0.007693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.957631 B = 3132.826807 C = 3638.992660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.728 5.728 2 C 0.083 3.917 3 Si 0.919 3.081 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.453 4.453 8 H 0.087 0.913 9 C 0.409 3.591 10 N -0.552 5.552 11 C 0.273 3.727 12 C -0.086 4.086 13 C -0.188 4.188 14 C -0.061 4.061 15 O -0.189 6.189 16 C 0.002 3.998 17 N -0.399 5.399 18 N -0.562 5.562 19 H 0.415 0.585 20 H 0.277 0.723 21 H 0.148 0.852 22 H 0.198 0.802 23 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.120 -2.828 -0.448 4.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.351 5.351 2 C -0.144 4.144 3 Si 0.742 3.258 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.186 1.186 7 C -0.495 4.495 8 H 0.105 0.895 9 C 0.159 3.841 10 N -0.288 5.288 11 C -0.008 4.008 12 C -0.090 4.090 13 C -0.208 4.208 14 C -0.127 4.127 15 O -0.086 6.086 16 C -0.069 4.069 17 N -0.236 5.236 18 N -0.281 5.281 19 H 0.257 0.743 20 H 0.088 0.912 21 H 0.166 0.834 22 H 0.215 0.785 23 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -3.892 -3.172 -0.485 5.044 hybrid contribution 1.504 0.645 -0.021 1.636 sum -2.388 -2.527 -0.506 3.514 Atomic orbital electron populations 1.69995 1.07172 1.28342 1.29640 1.25815 0.94888 1.00755 0.92954 0.86144 0.80216 0.80358 0.79034 1.19460 1.20028 1.18606 1.18365 0.94393 0.87550 1.49163 0.89489 1.20938 0.87518 0.85744 0.89904 1.71463 1.11402 1.13355 1.32615 1.21167 0.90510 0.90097 0.98981 1.18975 0.89986 0.91956 1.08116 1.22799 0.94725 0.96597 1.06706 1.23681 0.94531 0.85958 1.08507 1.83832 1.36638 1.16227 1.71864 1.24283 0.83809 0.95384 1.03388 1.77883 0.94001 1.15278 1.36398 1.48024 1.07147 1.05445 1.67513 0.74348 0.91204 0.83389 0.78536 0.76811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -19.08 11.94 55.56 0.66 -18.41 14 2 C 0.08 2.06 5.49 -17.31 -0.10 1.96 14 3 Si 0.92 18.07 29.57 -169.99 -5.03 13.04 14 4 H -0.27 -5.25 7.11 56.52 0.40 -4.85 14 5 H -0.28 -5.31 7.11 56.52 0.40 -4.91 14 6 H -0.26 -5.03 7.11 56.52 0.40 -4.63 14 7 C -0.45 -11.82 9.46 -38.08 -0.36 -12.18 14 8 H 0.09 2.06 7.86 -52.48 -0.41 1.65 14 9 C 0.41 11.33 7.68 -155.88 -1.20 10.13 14 10 N -0.55 -15.80 9.40 -10.53 -0.10 -15.90 14 11 C 0.27 7.28 7.96 -156.86 -1.25 6.03 14 12 C -0.09 -1.94 6.33 -103.15 -0.65 -2.59 14 13 C -0.19 -3.46 11.15 -37.52 -0.42 -3.88 14 14 C -0.06 -0.92 12.04 29.36 0.35 -0.57 14 15 O -0.19 -3.26 10.55 6.82 0.07 -3.19 14 16 C 0.00 0.04 12.05 29.91 0.36 0.40 14 17 N -0.40 -10.54 12.84 32.03 0.41 -10.12 14 18 N -0.56 -14.21 7.58 31.09 0.24 -13.97 14 19 H 0.42 8.86 8.96 -182.34 -1.63 7.22 14 20 H 0.28 6.52 8.29 -40.82 -0.34 6.18 14 21 H 0.15 2.54 8.06 -52.49 -0.42 2.12 14 22 H 0.20 2.01 8.06 -52.48 -0.42 1.58 14 23 H 0.22 4.05 8.06 -52.48 -0.42 3.63 14 LS Contribution 224.66 15.07 3.39 3.39 Total: -1.00 -31.81 224.66 -6.06 -37.87 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -2.45 Total: 8.00 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -3.26 Total: -0.70 kcal Atomic # 7 Polarization: -59.62 SS G_CDS: 1.21 Total: -58.41 kcal Atomic # 8 Polarization: -3.26 SS G_CDS: 0.07 Total: -3.19 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.03 Total: 13.04 kcal Total LS contribution 3.39 Total: 3.39 kcal Total: -31.81 -6.06 -37.87 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070584220.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.622 kcal (2) G-P(sol) polarization free energy of solvation -31.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds