Wall clock time and date at job start Mon Mar 30 2020 02:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30688 * 1 3 3 Si 1.86801 * 119.99828 * 2 1 4 4 H 1.48500 * 109.47349 * 274.98247 * 3 2 1 5 5 H 1.48505 * 109.47061 * 34.98175 * 3 2 1 6 6 H 1.48497 * 109.47054 * 154.97832 * 3 2 1 7 7 C 1.40189 * 120.00233 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00021 * 186.02348 * 7 2 1 9 9 C 1.40287 * 120.00022 * 6.01896 * 7 2 1 10 10 N 1.32982 * 126.20359 * 354.26212 * 9 7 2 11 11 C 1.32993 * 109.75244 * 180.02562 * 10 9 7 12 12 C 1.48284 * 125.29555 * 179.97438 * 11 10 9 13 13 C 1.46745 * 127.12370 * 179.97438 * 12 11 10 14 14 C 1.34346 * 106.01791 * 179.97438 * 13 12 11 15 15 O 1.34170 * 109.02149 * 0.26543 * 14 13 12 16 16 C 1.34020 * 110.76669 * 359.55257 * 15 14 13 17 17 N 1.32309 * 109.40748 * 0.26195 * 11 10 9 18 18 N 1.37125 * 126.20228 * 174.30412 * 9 7 2 19 19 H 0.96995 * 126.92769 * 359.97438 * 18 9 7 20 20 H 0.97001 * 119.99824 * 0.02562 * 1 2 3 21 21 H 1.08002 * 126.99190 * 0.02562 * 13 12 11 22 22 H 1.08005 * 125.48758 * 179.97438 * 14 13 12 23 23 H 1.08009 * 125.77859 * 180.14932 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 2.3830 2.1073 -1.3948 5 1 1.4948 2.6200 0.8027 6 1 3.5870 1.4121 0.5922 7 6 2.0079 -1.2140 -0.0005 8 1 3.0834 -1.2166 0.0976 9 6 1.3123 -2.4256 -0.1285 10 7 -0.0090 -2.5743 -0.1492 11 6 -0.3144 -3.8618 -0.2828 12 6 -1.6890 -4.4144 -0.3447 13 6 -2.0713 -5.8235 -0.4917 14 6 -3.4146 -5.8445 -0.4979 15 8 -3.8721 -4.5891 -0.3753 16 6 -2.8562 -3.7206 -0.2765 17 7 0.7992 -4.5735 -0.3457 18 7 1.8716 -3.6713 -0.2541 19 1 2.8173 -3.8863 -0.2721 20 1 -0.4850 0.8401 -0.0004 21 1 -1.4078 -6.6714 -0.5766 22 1 -4.0275 -6.7288 -0.5917 23 1 -2.9489 -2.6502 -0.1666 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070584220.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:52 Heat of formation + Delta-G solvation = 64.001880 kcal Electronic energy + Delta-G solvation = -12342.391129 eV Core-core repulsion = 9964.840442 eV Total energy + Delta-G solvation = -2377.550687 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.059 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -43.18330 -41.53365 -35.61850 -34.25955 -32.24278 -31.41311 -30.21440 -27.83407 -24.14472 -22.70822 -21.84351 -20.53748 -19.11585 -18.36492 -17.59133 -16.81558 -16.44655 -15.62369 -15.41997 -14.99250 -14.04163 -13.69065 -13.57301 -13.18252 -12.94598 -12.65680 -12.15578 -11.82408 -11.57985 -11.11923 -10.08996 -9.94360 -9.90204 -9.22878 -8.52491 -6.75703 0.64807 1.20707 1.44167 1.46264 1.62226 1.91502 2.18397 2.24066 2.64380 2.81754 3.47018 3.70510 3.97206 4.21588 4.66907 4.68855 5.08089 5.23553 5.28813 5.51042 5.65563 6.00273 6.23470 6.30716 6.39093 6.75382 7.23692 8.14381 8.43670 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.054046 B = 0.008935 C = 0.007693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.957631 B = 3132.826807 C = 3638.992660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.035 3.965 3 Si 1.006 2.994 4 H -0.264 1.264 5 H -0.268 1.268 6 H -0.251 1.251 7 C -0.473 4.473 8 H 0.105 0.895 9 C 0.379 3.621 10 N -0.586 5.586 11 C 0.261 3.739 12 C -0.135 4.135 13 C -0.214 4.214 14 C -0.020 4.020 15 O -0.181 6.181 16 C 0.010 3.990 17 N -0.417 5.417 18 N -0.561 5.561 19 H 0.428 0.572 20 H 0.286 0.714 21 H 0.155 0.845 22 H 0.258 0.742 23 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.624 -2.580 -0.511 4.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.189 4.189 3 Si 0.825 3.175 4 H -0.189 1.189 5 H -0.192 1.192 6 H -0.174 1.174 7 C -0.515 4.515 8 H 0.123 0.877 9 C 0.130 3.870 10 N -0.323 5.323 11 C -0.019 4.019 12 C -0.139 4.139 13 C -0.234 4.234 14 C -0.085 4.085 15 O -0.077 6.077 16 C -0.061 4.061 17 N -0.253 5.253 18 N -0.282 5.282 19 H 0.272 0.728 20 H 0.097 0.903 21 H 0.172 0.828 22 H 0.273 0.727 23 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -4.388 -2.959 -0.548 5.321 hybrid contribution 1.582 0.499 -0.003 1.658 sum -2.807 -2.460 -0.550 3.773 Atomic orbital electron populations 1.70091 1.09148 1.30109 1.29596 1.26944 0.95765 1.04472 0.91684 0.84851 0.78852 0.74602 0.79228 1.18892 1.19216 1.17449 1.18923 0.95471 0.87848 1.49216 0.87740 1.21432 0.88008 0.86872 0.90679 1.71418 1.12228 1.14648 1.34008 1.21901 0.92320 0.89705 0.97989 1.19303 0.88891 0.94629 1.11124 1.22928 0.96425 0.94970 1.09121 1.24685 0.93897 0.86228 1.03733 1.83878 1.35604 1.16913 1.71259 1.24188 0.83678 0.95711 1.02562 1.77774 0.94313 1.15826 1.37372 1.47930 1.07769 1.04836 1.67705 0.72756 0.90308 0.82772 0.72663 0.76939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -40.58 11.94 21.87 0.26 -40.32 14 2 C 0.03 1.72 5.49 85.34 0.47 2.19 14 3 Si 1.01 36.27 29.57 68.60 2.03 38.30 14 4 H -0.26 -9.26 7.11 99.48 0.71 -8.55 14 5 H -0.27 -9.25 7.11 99.48 0.71 -8.54 14 6 H -0.25 -8.55 7.11 99.48 0.71 -7.84 14 7 C -0.47 -24.86 9.46 23.24 0.22 -24.64 14 8 H 0.10 4.91 7.86 -2.91 -0.02 4.88 14 9 C 0.38 21.56 7.68 133.80 1.03 22.59 14 10 N -0.59 -34.63 9.40 -187.22 -1.76 -36.39 14 11 C 0.26 14.36 7.96 137.49 1.09 15.46 14 12 C -0.14 -6.15 6.33 -18.91 -0.12 -6.27 14 13 C -0.21 -7.63 11.15 23.60 0.26 -7.36 14 14 C -0.02 -0.53 12.04 66.93 0.81 0.27 14 15 O -0.18 -5.80 10.55 1.50 0.02 -5.78 14 16 C 0.01 0.38 12.05 67.29 0.81 1.20 14 17 N -0.42 -22.57 12.84 -52.58 -0.68 -23.24 14 18 N -0.56 -29.10 7.58 -55.54 -0.42 -29.52 14 19 H 0.43 18.69 8.96 -213.10 -1.91 16.78 14 20 H 0.29 13.52 8.29 -92.71 -0.77 12.75 14 21 H 0.15 5.16 8.06 -2.91 -0.02 5.14 14 22 H 0.26 3.64 8.06 -2.91 -0.02 3.62 14 23 H 0.21 8.25 8.06 -2.91 -0.02 8.23 14 Total: -1.00 -70.42 224.66 3.37 -67.05 By element: Atomic # 1 Polarization: 27.11 SS G_CDS: -0.65 Total: 26.46 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: 4.57 Total: 3.43 kcal Atomic # 7 Polarization: -126.87 SS G_CDS: -2.60 Total: -129.47 kcal Atomic # 8 Polarization: -5.80 SS G_CDS: 0.02 Total: -5.78 kcal Atomic # 14 Polarization: 36.27 SS G_CDS: 2.03 Total: 38.30 kcal Total: -70.42 3.37 -67.05 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070584220.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.055 kcal (2) G-P(sol) polarization free energy of solvation -70.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds