Wall clock time and date at job start Mon Mar 30 2020 02:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37124 * 121.22604 * 2 1 4 4 N 1.32188 * 120.42237 * 179.67757 * 3 2 1 5 5 N 1.28446 * 123.09875 * 0.65068 * 4 3 2 6 6 C 1.32114 * 121.76657 * 359.66317 * 5 4 3 7 7 O 1.34889 * 134.48911 * 179.97438 * 6 5 4 8 8 C 1.35099 * 107.99491 * 180.02562 * 7 6 5 9 9 C 1.40110 * 125.11573 * 180.02562 * 8 7 6 10 10 H 1.08002 * 120.00098 * 174.17828 * 9 8 7 11 11 C 1.40490 * 119.99954 * 354.17859 * 9 8 7 12 12 N 1.30498 * 120.00078 * 6.04409 * 11 9 8 13 13 Si 1.86796 * 119.99827 * 186.05291 * 11 9 8 14 14 H 1.48500 * 109.47303 * 94.98169 * 13 11 9 15 15 H 1.48503 * 109.46847 * 214.97914 * 13 11 9 16 16 H 1.48501 * 109.47389 * 334.97733 * 13 11 9 17 17 N 1.32422 * 109.76699 * 359.97438 * 8 7 6 18 18 C 1.33769 * 108.78385 * 0.02562 * 17 8 7 19 19 H 1.08997 * 109.46956 * 269.70902 * 1 2 3 20 20 H 1.09002 * 109.47323 * 149.71436 * 1 2 3 21 21 H 1.09002 * 109.47674 * 29.71564 * 1 2 3 22 22 H 1.07997 * 119.78513 * 0.02562 * 3 2 1 23 23 H 0.97001 * 120.00415 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2178 1.1726 0.0000 4 7 3.5396 1.1541 0.0064 5 7 4.2259 0.0683 0.0007 6 6 3.6481 -1.1197 -0.0056 7 8 4.1000 -2.3906 -0.0128 8 6 3.0292 -3.2144 -0.0175 9 6 3.0892 -4.6142 -0.0248 10 1 2.1826 -5.1940 0.0667 11 6 4.3286 -5.2635 -0.1513 12 7 5.4331 -4.5685 -0.1433 13 14 4.3954 -7.1215 -0.3313 14 1 4.4620 -7.4773 -1.7715 15 1 5.5998 -7.6431 0.3636 16 1 3.1778 -7.7214 0.2711 17 7 1.9144 -2.4997 -0.0129 18 6 2.2353 -1.2011 -0.0058 19 1 -0.3633 -0.0052 1.0276 20 1 -0.3634 -0.8874 -0.5183 21 1 -0.3634 0.8925 -0.5094 22 1 1.6945 2.1172 0.0004 23 1 6.2889 -5.0168 -0.2302 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074309346.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:40 Heat of formation + Delta-G solvation = 46.120598 kcal Electronic energy + Delta-G solvation = -12619.344192 eV Core-core repulsion = 10241.018115 eV Total energy + Delta-G solvation = -2378.326078 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.059 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.79582 -38.77866 -34.38240 -34.13392 -32.25871 -30.35712 -28.17583 -26.34819 -23.04928 -22.41688 -20.27796 -18.68439 -17.81506 -16.32210 -15.66160 -15.62530 -14.46976 -13.85543 -13.30847 -13.04593 -12.46530 -12.36802 -12.00671 -11.74992 -11.70523 -11.54116 -10.74908 -10.63789 -10.23555 -9.96089 -9.55172 -8.63471 -8.43473 -8.00988 -7.53126 -5.41617 1.47424 2.04742 2.67217 2.72774 2.81870 3.42056 3.49153 3.58893 4.46234 4.74707 5.04862 5.20822 5.44057 5.62808 5.92869 6.10811 6.14722 6.36852 6.41022 6.74578 6.83110 6.98226 7.35556 7.52817 7.81253 7.93942 9.09973 9.44286 9.73580 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.062643 B = 0.009686 C = 0.008434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.872219 B = 2890.154345 C = 3319.254585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.147 4.147 3 C 0.038 3.962 4 N -0.290 5.290 5 N -0.213 5.213 6 C 0.105 3.895 7 O -0.186 6.186 8 C 0.372 3.628 9 C -0.372 4.372 10 H 0.130 0.870 11 C 0.058 3.942 12 N -0.728 5.728 13 Si 0.946 3.054 14 H -0.259 1.259 15 H -0.267 1.267 16 H -0.251 1.251 17 N -0.610 5.610 18 C 0.110 3.890 19 H 0.061 0.939 20 H 0.068 0.932 21 H 0.059 0.941 22 H 0.158 0.842 23 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.679 -1.289 -0.247 3.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.161 4.161 3 C -0.122 4.122 4 N -0.137 5.137 5 N -0.065 5.065 6 C -0.090 4.090 7 O -0.078 6.078 8 C 0.196 3.804 9 C -0.405 4.405 10 H 0.148 0.852 11 C -0.171 4.171 12 N -0.351 5.351 13 Si 0.767 3.233 14 H -0.184 1.184 15 H -0.192 1.192 16 H -0.174 1.174 17 N -0.347 5.347 18 C -0.025 4.025 19 H 0.080 0.920 20 H 0.087 0.913 21 H 0.078 0.922 22 H 0.176 0.824 23 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.603 -0.836 -0.244 2.744 hybrid contribution -0.454 -1.145 -0.079 1.234 sum -3.056 -1.981 -0.322 3.656 Atomic orbital electron populations 1.20365 0.90172 1.02069 1.01549 1.19599 0.97118 0.89832 1.09573 1.23176 0.92450 0.97792 0.98794 1.73009 1.06813 1.15836 1.18042 1.72446 1.30789 0.91652 1.11609 1.22971 0.92184 0.88221 1.05617 1.85061 1.34763 1.10602 1.77347 1.22615 0.77014 0.92779 0.88011 1.19133 0.96129 0.85378 1.39905 0.85199 1.26517 0.94332 1.04127 0.92171 1.69641 0.99920 1.40204 1.25346 0.85637 0.80013 0.77535 0.80106 1.18384 1.19150 1.17378 1.70959 1.26369 0.99382 1.37970 1.20662 0.92469 0.93922 0.95488 0.92048 0.91337 0.92237 0.82440 0.88644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.41 10.09 36.00 0.36 -1.05 14 2 C -0.15 -3.14 5.94 -104.19 -0.62 -3.76 14 3 C 0.04 0.76 10.94 -17.80 -0.19 0.57 14 4 N -0.29 -6.77 11.47 30.30 0.35 -6.42 14 5 N -0.21 -5.58 11.54 30.79 0.36 -5.23 14 6 C 0.10 2.86 8.72 -16.18 -0.14 2.72 14 7 O -0.19 -5.29 9.02 1.84 0.02 -5.27 14 8 C 0.37 10.05 7.60 -16.60 -0.13 9.92 14 9 C -0.37 -8.95 9.46 -38.03 -0.36 -9.31 14 10 H 0.13 2.85 7.86 -52.49 -0.41 2.43 14 11 C 0.06 1.27 5.50 -17.27 -0.09 1.18 14 12 N -0.73 -17.24 11.96 55.58 0.66 -16.57 14 13 Si 0.95 15.68 29.57 -169.99 -5.03 10.65 14 14 H -0.26 -4.24 7.11 56.52 0.40 -3.84 14 15 H -0.27 -4.30 7.11 56.52 0.40 -3.90 14 16 H -0.25 -4.02 7.11 56.52 0.40 -3.62 14 17 N -0.61 -16.22 11.34 -11.00 -0.12 -16.34 14 18 C 0.11 2.83 7.05 -84.94 -0.60 2.24 14 19 H 0.06 0.95 8.14 -51.93 -0.42 0.53 14 20 H 0.07 1.21 8.12 -51.93 -0.42 0.79 14 21 H 0.06 0.80 8.11 -51.93 -0.42 0.38 14 22 H 0.16 2.41 8.06 -52.49 -0.42 1.98 14 23 H 0.30 6.22 8.29 -40.82 -0.34 5.88 14 LS Contribution 220.08 15.07 3.32 3.32 Total: -1.00 -29.27 220.08 -3.46 -32.72 By element: Atomic # 1 Polarization: 1.88 SS G_CDS: -1.23 Total: 0.64 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: -1.77 Total: 2.50 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: 1.24 Total: -44.57 kcal Atomic # 8 Polarization: -5.29 SS G_CDS: 0.02 Total: -5.27 kcal Atomic # 14 Polarization: 15.68 SS G_CDS: -5.03 Total: 10.65 kcal Total LS contribution 3.32 Total: 3.32 kcal Total: -29.27 -3.46 -32.72 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074309346.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.845 kcal (2) G-P(sol) polarization free energy of solvation -29.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds