Wall clock time and date at job start Mon Mar 30 2020 02:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37124 * 121.22604 * 2 1 4 4 N 1.32188 * 120.42237 * 179.67757 * 3 2 1 5 5 N 1.28446 * 123.09875 * 0.65068 * 4 3 2 6 6 C 1.32114 * 121.76657 * 359.66317 * 5 4 3 7 7 O 1.34889 * 134.48911 * 179.97438 * 6 5 4 8 8 C 1.35099 * 107.99491 * 180.02562 * 7 6 5 9 9 C 1.40110 * 125.11573 * 180.02562 * 8 7 6 10 10 H 1.08002 * 120.00098 * 174.17828 * 9 8 7 11 11 C 1.40490 * 119.99954 * 354.17859 * 9 8 7 12 12 N 1.30498 * 120.00078 * 6.04409 * 11 9 8 13 13 Si 1.86796 * 119.99827 * 186.05291 * 11 9 8 14 14 H 1.48500 * 109.47303 * 94.98169 * 13 11 9 15 15 H 1.48503 * 109.46847 * 214.97914 * 13 11 9 16 16 H 1.48501 * 109.47389 * 334.97733 * 13 11 9 17 17 N 1.32422 * 109.76699 * 359.97438 * 8 7 6 18 18 C 1.33769 * 108.78385 * 0.02562 * 17 8 7 19 19 H 1.08997 * 109.46956 * 269.70902 * 1 2 3 20 20 H 1.09002 * 109.47323 * 149.71436 * 1 2 3 21 21 H 1.09002 * 109.47674 * 29.71564 * 1 2 3 22 22 H 1.07997 * 119.78513 * 0.02562 * 3 2 1 23 23 H 0.97001 * 120.00415 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2178 1.1726 0.0000 4 7 3.5396 1.1541 0.0064 5 7 4.2259 0.0683 0.0007 6 6 3.6481 -1.1197 -0.0056 7 8 4.1000 -2.3906 -0.0128 8 6 3.0292 -3.2144 -0.0175 9 6 3.0892 -4.6142 -0.0248 10 1 2.1826 -5.1940 0.0667 11 6 4.3286 -5.2635 -0.1513 12 7 5.4331 -4.5685 -0.1433 13 14 4.3954 -7.1215 -0.3313 14 1 4.4620 -7.4773 -1.7715 15 1 5.5998 -7.6431 0.3636 16 1 3.1778 -7.7214 0.2711 17 7 1.9144 -2.4997 -0.0129 18 6 2.2353 -1.2011 -0.0058 19 1 -0.3633 -0.0052 1.0276 20 1 -0.3634 -0.8874 -0.5183 21 1 -0.3634 0.8925 -0.5094 22 1 1.6945 2.1172 0.0004 23 1 6.2889 -5.0168 -0.2302 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074309346.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:40 Heat of formation + Delta-G solvation = 21.602470 kcal Electronic energy + Delta-G solvation = -12620.407378 eV Core-core repulsion = 10241.018115 eV Total energy + Delta-G solvation = -2379.389264 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.059 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.69466 -40.62177 -36.14157 -35.96098 -34.04502 -32.20610 -29.92387 -28.01762 -24.87121 -24.22290 -22.13061 -20.53124 -19.70096 -18.08878 -17.59813 -17.29559 -16.18376 -15.46256 -15.05419 -14.66328 -14.04830 -13.99445 -13.62338 -13.44200 -13.13294 -13.10236 -12.46007 -12.03296 -12.01307 -11.52808 -11.46472 -10.47975 -10.31536 -9.84597 -9.21173 -7.28389 -0.35515 0.22827 1.23518 1.34238 1.59324 1.67718 1.83518 2.05704 2.65369 2.90477 3.26335 3.45867 3.78247 4.00851 4.44320 4.46193 4.67082 4.84118 5.01673 5.04001 5.08192 5.40273 5.53547 5.69798 6.03172 6.07082 7.17018 7.79794 7.87975 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.062643 B = 0.009686 C = 0.008434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.872219 B = 2890.154345 C = 3319.254585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.136 4.136 3 C 0.048 3.952 4 N -0.298 5.298 5 N -0.239 5.239 6 C 0.066 3.934 7 O -0.212 6.212 8 C 0.334 3.666 9 C -0.382 4.382 10 H 0.147 0.853 11 C 0.018 3.982 12 N -0.769 5.769 13 Si 1.030 2.970 14 H -0.253 1.253 15 H -0.257 1.257 16 H -0.238 1.238 17 N -0.628 5.628 18 C 0.081 3.919 19 H 0.079 0.921 20 H 0.054 0.946 21 H 0.104 0.896 22 H 0.218 0.782 23 H 0.314 0.686 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.133 -1.469 -0.336 5.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.151 4.151 3 C -0.111 4.111 4 N -0.145 5.145 5 N -0.092 5.092 6 C -0.128 4.128 7 O -0.105 6.105 8 C 0.159 3.841 9 C -0.415 4.415 10 H 0.164 0.836 11 C -0.207 4.207 12 N -0.393 5.393 13 Si 0.845 3.155 14 H -0.177 1.177 15 H -0.181 1.181 16 H -0.160 1.160 17 N -0.366 5.366 18 C -0.053 4.053 19 H 0.097 0.903 20 H 0.073 0.927 21 H 0.122 0.878 22 H 0.235 0.765 23 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -4.065 -0.981 -0.327 4.195 hybrid contribution -0.048 -0.931 -0.044 0.934 sum -4.113 -1.913 -0.371 4.551 Atomic orbital electron populations 1.20484 0.86460 1.03648 1.03090 1.20318 0.99734 0.88487 1.06569 1.24002 0.91220 0.99755 0.96160 1.72914 1.08815 1.14792 1.18004 1.72399 1.32171 0.91885 1.12759 1.23268 0.93503 0.88223 1.07795 1.84979 1.35843 1.11418 1.78239 1.23277 0.77055 0.93880 0.89897 1.19772 0.97976 0.84706 1.39064 0.83577 1.27760 0.92842 1.09546 0.90569 1.69701 1.01154 1.42990 1.25429 0.84471 0.80723 0.69939 0.80386 1.17655 1.18105 1.16033 1.70885 1.26336 0.99932 1.39468 1.21190 0.92412 0.94945 0.96788 0.90255 0.92668 0.87760 0.76537 0.87384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.39 10.09 71.24 0.72 -1.67 14 2 C -0.14 -5.58 5.94 -19.58 -0.12 -5.69 14 3 C 0.05 1.80 10.94 84.38 0.92 2.72 14 4 N -0.30 -13.68 11.47 -58.06 -0.67 -14.35 14 5 N -0.24 -12.87 11.54 -169.88 -1.96 -14.83 14 6 C 0.07 3.73 8.72 85.46 0.75 4.47 14 7 O -0.21 -12.69 9.02 -16.33 -0.15 -12.83 14 8 C 0.33 18.79 7.60 85.06 0.65 19.43 14 9 C -0.38 -18.78 9.46 23.27 0.22 -18.56 14 10 H 0.15 6.42 7.86 -2.91 -0.02 6.40 14 11 C 0.02 0.79 5.50 85.44 0.47 1.26 14 12 N -0.77 -37.31 11.96 21.92 0.26 -37.05 14 13 Si 1.03 30.93 29.57 68.60 2.03 32.96 14 14 H -0.25 -7.29 7.11 99.48 0.71 -6.59 14 15 H -0.26 -7.27 7.11 99.48 0.71 -6.56 14 16 H -0.24 -6.61 7.11 99.48 0.71 -5.90 14 17 N -0.63 -34.40 11.34 -301.82 -3.42 -37.82 14 18 C 0.08 4.22 7.05 40.20 0.28 4.51 14 19 H 0.08 2.16 8.14 -2.39 -0.02 2.14 14 20 H 0.05 1.83 8.12 -2.39 -0.02 1.81 14 21 H 0.10 2.23 8.11 -2.39 -0.02 2.21 14 22 H 0.22 5.37 8.06 -2.91 -0.02 5.35 14 23 H 0.31 13.13 8.29 -92.71 -0.77 12.36 14 Total: -1.00 -67.48 220.08 1.23 -66.24 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 1.25 Total: 11.21 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: 3.89 Total: 6.47 kcal Atomic # 7 Polarization: -98.26 SS G_CDS: -5.79 Total: -104.05 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: -0.15 Total: -12.83 kcal Atomic # 14 Polarization: 30.93 SS G_CDS: 2.03 Total: 32.96 kcal Total: -67.48 1.23 -66.24 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074309346.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.845 kcal (2) G-P(sol) polarization free energy of solvation -67.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds