Wall clock time and date at job start Mon Mar 30 2020 02:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31305 * 1 3 3 Si 1.86791 * 120.00615 * 2 1 4 4 H 1.48508 * 109.47013 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47481 * 119.99589 * 3 2 1 6 6 H 1.48498 * 109.46969 * 239.99869 * 3 2 1 7 7 C 1.39006 * 119.99493 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00572 * 204.24574 * 7 2 1 9 9 N 1.37100 * 119.99877 * 24.25071 * 7 2 1 10 10 C 1.36525 * 119.34294 * 31.11430 * 9 7 2 11 11 C 1.34566 * 122.16073 * 179.97438 * 10 9 7 12 12 C 1.41141 * 120.26085 * 0.05431 * 11 10 9 13 13 N 1.35939 * 134.41989 * 180.02562 * 12 11 10 14 14 H 0.97006 * 125.90300 * 359.94278 * 13 12 11 15 15 N 1.40087 * 108.20053 * 179.97438 * 13 12 11 16 16 C 1.30482 * 109.52795 * 0.02562 * 15 13 12 17 17 C 1.40464 * 118.83898 * 359.96523 * 12 11 10 18 18 C 1.34945 * 119.34249 * 210.84369 * 9 7 2 19 19 O 1.21842 * 120.53779 * 359.97438 * 18 9 7 20 20 H 0.96996 * 120.00626 * 185.80192 * 1 2 3 21 21 H 1.07998 * 118.91926 * 0.02562 * 10 9 7 22 22 H 1.07998 * 119.86904 * 180.02562 * 11 10 9 23 23 H 1.07992 * 125.78699 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2472 1.6176 0.0000 4 1 1.2822 2.7464 -0.0006 5 1 3.1009 1.6963 1.2125 6 1 3.1009 1.6961 -1.2125 7 6 2.0080 -1.2039 0.0005 8 1 3.0166 -1.2452 0.3846 9 7 1.4131 -2.3390 -0.4866 10 6 0.4982 -2.2349 -1.4946 11 6 -0.1194 -3.3112 -2.0153 12 6 0.1667 -4.6027 -1.5232 13 7 -0.2709 -5.8541 -1.8243 14 1 -0.9253 -6.0797 -2.5039 15 7 0.3861 -6.7615 -0.9832 16 6 1.1965 -6.1142 -0.1914 17 6 1.1037 -4.7404 -0.4860 18 6 1.7476 -3.5373 0.0360 19 8 2.5700 -3.6143 0.9316 20 1 -0.4851 -0.8357 0.0849 21 1 0.2629 -1.2568 -1.8875 22 1 -0.8370 -3.1861 -2.8126 23 1 1.8313 -6.5571 0.5616 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074309353.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:04 Heat of formation + Delta-G solvation = 29.641509 kcal Electronic energy + Delta-G solvation = -12812.746420 eV Core-core repulsion = 10433.705755 eV Total energy + Delta-G solvation = -2379.040665 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.059 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.67570 -40.70165 -37.85518 -35.21561 -33.13211 -32.26230 -30.01534 -27.17481 -24.52288 -23.72177 -22.58975 -20.70745 -19.23371 -18.34551 -17.59647 -16.81071 -16.35435 -15.62212 -15.56660 -15.29288 -15.03015 -14.48606 -13.90448 -12.97393 -12.81008 -12.51983 -12.18028 -12.10377 -11.88014 -11.29712 -10.93428 -10.74022 -10.10863 -9.30923 -8.75098 -6.51246 0.05546 0.85076 1.49529 1.56059 1.60915 1.73982 1.86508 2.20611 2.49124 2.64256 3.05329 3.60869 3.82979 3.96087 4.14317 4.41788 4.70557 5.10011 5.22599 5.35523 5.52856 5.65463 6.26163 6.29737 6.42501 6.60531 6.91974 7.43294 8.12985 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.062509 B = 0.010640 C = 0.009430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.828179 B = 2630.845992 C = 2968.548360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C -0.001 4.001 3 Si 1.132 2.868 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.462 4.462 8 H 0.084 0.916 9 N -0.354 5.354 10 C 0.140 3.860 11 C -0.249 4.249 12 C 0.191 3.809 13 N -0.469 5.469 14 H 0.456 0.544 15 N -0.295 5.295 16 C 0.113 3.887 17 C -0.346 4.346 18 C 0.505 3.495 19 O -0.607 6.607 20 H 0.271 0.729 21 H 0.163 0.837 22 H 0.179 0.821 23 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.689 -2.679 -6.718 7.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.208 4.208 3 Si 0.948 3.052 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.588 4.588 8 H 0.101 0.899 9 N -0.049 5.049 10 C 0.007 3.993 11 C -0.276 4.276 12 C 0.063 3.937 13 N -0.182 5.182 14 H 0.304 0.696 15 N -0.114 5.114 16 C -0.078 4.078 17 C -0.359 4.359 18 C 0.306 3.694 19 O -0.494 6.494 20 H 0.082 0.918 21 H 0.180 0.820 22 H 0.196 0.804 23 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -2.840 -2.276 -6.524 7.470 hybrid contribution 0.159 -1.182 0.365 1.247 sum -2.681 -3.458 -6.159 7.555 Atomic orbital electron populations 1.70860 1.07511 1.31243 1.39177 1.28273 0.95970 1.05494 0.91066 0.82745 0.74296 0.69377 0.78780 1.19053 1.19878 1.18155 1.20887 1.01678 0.87234 1.49010 0.89855 1.41485 1.31022 1.07381 1.25057 1.21879 0.89673 1.00981 0.86787 1.19499 1.11651 0.86392 1.10101 1.19128 0.92749 0.88359 0.93510 1.45752 1.37931 1.01304 1.33251 0.69551 1.76883 1.12138 1.15550 1.06866 1.23703 0.96594 0.89695 0.97774 1.20728 1.11597 0.94683 1.08905 1.18056 0.84600 0.83700 0.83000 1.90632 1.38216 1.86938 1.33599 0.91798 0.81975 0.80415 0.77971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -43.75 12.43 21.67 0.27 -43.48 14 2 C 0.00 -0.05 4.76 84.96 0.40 0.36 14 3 Si 1.13 42.58 29.98 68.60 2.06 44.64 14 4 H -0.27 -9.63 7.11 99.48 0.71 -8.93 14 5 H -0.27 -10.11 7.11 99.48 0.71 -9.40 14 6 H -0.26 -8.85 7.11 99.48 0.71 -8.15 14 7 C -0.46 -25.25 8.92 84.05 0.75 -24.50 14 8 H 0.08 4.87 7.63 -2.91 -0.02 4.84 14 9 N -0.35 -18.40 2.61 -471.22 -1.23 -19.63 14 10 C 0.14 6.03 8.19 83.12 0.68 6.71 14 11 C -0.25 -8.74 10.00 22.14 0.22 -8.51 14 12 C 0.19 7.11 7.40 39.76 0.29 7.40 14 13 N -0.47 -14.29 7.38 -51.21 -0.38 -14.67 14 14 H 0.46 9.62 8.96 -213.32 -1.91 7.71 14 15 N -0.30 -10.16 12.60 -56.59 -0.71 -10.87 14 16 C 0.11 4.34 12.04 85.52 1.03 5.37 14 17 C -0.35 -15.49 6.36 -20.07 -0.13 -15.62 14 18 C 0.50 27.25 7.57 86.25 0.65 27.90 14 19 O -0.61 -36.75 16.92 -4.80 -0.08 -36.83 14 20 H 0.27 14.20 6.96 -92.71 -0.65 13.55 14 21 H 0.16 6.77 6.52 -2.91 -0.02 6.75 14 22 H 0.18 4.48 8.06 -2.91 -0.02 4.45 14 23 H 0.20 6.74 8.06 -2.91 -0.02 6.72 14 Total: -1.00 -67.49 214.69 3.31 -64.19 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -0.53 Total: 17.55 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: 3.91 Total: -0.89 kcal Atomic # 7 Polarization: -86.60 SS G_CDS: -2.05 Total: -88.65 kcal Atomic # 8 Polarization: -36.75 SS G_CDS: -0.08 Total: -36.83 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.06 Total: 44.64 kcal Total: -67.49 3.31 -64.19 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074309353.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.830 kcal (2) G-P(sol) polarization free energy of solvation -67.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds